32 lines
599 B
Bash
32 lines
599 B
Bash
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=4
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inherit flag-o-matic autotools
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DESCRIPTION="A fast splice junction mapper for RNA-Seq reads"
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HOMEPAGE="http://tophat.cbcb.umd.edu/"
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SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz"
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LICENSE="Artistic"
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SLOT="0"
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IUSE="+bam"
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KEYWORDS="~amd64 ~x86"
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DEPEND="bam? ( sci-biology/samtools )"
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RDEPEND="${DEPEND}
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sci-biology/bowtie"
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MAKEOPTS="${MAKEOPTS} -j1"
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src_prepare() {
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filter-ldflags -Wl,--as-needed
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eautoreconf
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}
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src_configure() {
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econf \
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$(use_with bam)
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}
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