53 lines
1.5 KiB
Bash
53 lines
1.5 KiB
Bash
# Copyright 1999-2009 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Id$
|
|
|
|
inherit eutils
|
|
|
|
DESCRIPTION="A rapid whole genome aligner"
|
|
HOMEPAGE="http://mummer.sourceforge.net/"
|
|
SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz"
|
|
|
|
LICENSE="Artistic"
|
|
SLOT="0"
|
|
IUSE="doc"
|
|
KEYWORDS="amd64 x86"
|
|
|
|
DEPEND=""
|
|
RDEPEND="app-shells/tcsh"
|
|
|
|
S="${WORKDIR}/MUMmer${PV}"
|
|
|
|
src_unpack() {
|
|
unpack ${A}
|
|
# Warning: package uses CPPFLAGS on c as well as cpp, despite the name
|
|
sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \
|
|
-e 's/LDFLAGS =$//' "${S}/Makefile" || die
|
|
}
|
|
|
|
src_compile() {
|
|
emake || die
|
|
|
|
sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \
|
|
-e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \
|
|
-e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \
|
|
-e 's|\(set bindir = \).*|\1/usr/bin|' \
|
|
-e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \
|
|
-e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \
|
|
scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die
|
|
mv annotate mummer-annotate || die
|
|
sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die
|
|
}
|
|
|
|
src_install() {
|
|
dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die
|
|
|
|
insinto /usr/share/${PN}/scripts
|
|
doins scripts/{*.awk,*.csh,*.pl} || die
|
|
insinto /usr/share/${PN}/lib
|
|
doins scripts/Foundation.pm || die
|
|
|
|
dodoc ACKNOWLEDGEMENTS ChangeLog README
|
|
insinto /usr/share/doc/${PF}
|
|
use doc && doins -r docs
|
|
}
|