134 lines
3.5 KiB
Bash
134 lines
3.5 KiB
Bash
# Copyright 1999-2015 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Id$
|
|
|
|
# @ECLASS: emboss-r1.eclass
|
|
# @MAINTAINER:
|
|
# sci-biology@gentoo.org
|
|
# jlec@gentoo.org
|
|
# ted.tanberry@gmail.com
|
|
# @AUTHOR:
|
|
# Original author: Author Olivier Fisette <ofisette@gmail.com>
|
|
# Next gen author: Justin Lecher <jlec@gentoo.org>
|
|
# Next gen author: Ted Tanberry <ted.tanberry@gmail.com>
|
|
# @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons).
|
|
# @DESCRIPTION:
|
|
# The inheriting ebuild must set at least EAPI=5 and provide EBO_DESCRIPTION before the inherit line.
|
|
# KEYWORDS should be set. Additionally "(R|P)DEPEND"encies and other standard
|
|
# ebuild variables can be extended (FOO+=" bar").
|
|
#
|
|
# Example:
|
|
#
|
|
# EAPI="5"
|
|
#
|
|
# EBO_DESCRIPTION="applications from the CBS group"
|
|
#
|
|
# inherit emboss-r1
|
|
|
|
# @ECLASS-VARIABLE: EBO_DESCRIPTION
|
|
# @DEFAULT_UNSET
|
|
# @DESCRIPTION:
|
|
# Should be set. Completes the generic description of the embassy module as follows:
|
|
#
|
|
# EMBOSS integrated version of ${EBO_DESCRIPTION}, e.g.
|
|
#
|
|
# "EMBOSS integrated version of applications from the CBS group"
|
|
#
|
|
# Defaults to the upstream name of the module.
|
|
|
|
# @ECLASS-VARIABLE: EBO_EXTRA_ECONF
|
|
# @DEFAULT_UNSET
|
|
# @DESCRIPTION:
|
|
# Extra config options passed to econf.
|
|
|
|
case ${EAPI:-0} in
|
|
5) ;;
|
|
*) die "this eclass doesn't support < EAPI 5" ;;
|
|
esac
|
|
|
|
inherit autotools-utils eutils flag-o-matic
|
|
|
|
HOMEPAGE="http://emboss.sourceforge.net/"
|
|
LICENSE="LGPL-2 GPL-2"
|
|
|
|
SLOT="0"
|
|
IUSE="mysql pdf png postgres static-libs X"
|
|
|
|
DEPEND="
|
|
dev-libs/expat
|
|
dev-libs/libpcre:3
|
|
sci-libs/plplot
|
|
sys-libs/zlib
|
|
mysql? ( virtual/mysql )
|
|
pdf? ( media-libs/libharu )
|
|
png? ( media-libs/gd[png] )
|
|
postgres? ( dev-db/postgresql:= )
|
|
X? ( x11-libs/libXt )"
|
|
RDEPEND="${DEPEND}"
|
|
|
|
if [[ ${PN} == embassy-* ]]; then
|
|
EMBASSY_PACKAGE=yes
|
|
# The EMBASSY package name, retrieved from the inheriting ebuild's name
|
|
EN=${PN:8}
|
|
# The full name and version of the EMBASSY package (excluding the Gentoo
|
|
# revision number)
|
|
EF=$(echo ${EN} | tr "[:lower:]" "[:upper:]")-${PV}
|
|
: ${EBO_DESCRIPTION:=${EN}}
|
|
DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}"
|
|
SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EN}-${PVR}.tar.gz"
|
|
DEPEND+=" >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]"
|
|
|
|
S="${WORKDIR}"/${EF}
|
|
fi
|
|
|
|
# @FUNCTION: emboss-r1_src_prepare
|
|
# @DESCRIPTION:
|
|
# Does the following things
|
|
#
|
|
# 1. Renames configure.in to configure.ac, if possible
|
|
# 2. Applies ${PATCHES[@]} and runs autotools via autotools-utils.eclass
|
|
#
|
|
|
|
emboss-r1_src_prepare() {
|
|
if [[ -e configure.in ]]; then
|
|
mv configure.{in,ac} || die
|
|
fi
|
|
|
|
autotools-utils_src_prepare
|
|
}
|
|
|
|
# @FUNCTION: emboss-r1_src_configure
|
|
# @DESCRIPTION:
|
|
# runs econf with following options.
|
|
#
|
|
# $(use_with X x)
|
|
# $(use_with png pngdriver)
|
|
# $(use_with pdf hpdf)
|
|
# $(use_with mysql mysql)
|
|
# $(use_with postgres postgresql)
|
|
# $(use_enable static-libs static)
|
|
# --enable-large
|
|
# --without-java
|
|
# --enable-systemlibs
|
|
# ${EBO_EXTRA_ECONF}
|
|
|
|
emboss-r1_src_configure() {
|
|
local myeconfargs=(
|
|
$(use_with X x)
|
|
$(use_with png pngdriver "${EPREFIX}/usr")
|
|
$(use_with pdf hpdf "${EPREFIX}/usr")
|
|
$(use_with mysql mysql "${EPREFIX}/usr/bin/mysql_config")
|
|
$(use_with postgres postgresql "${EPREFIX}/usr/bin/pg_config")
|
|
--enable-large
|
|
--without-java
|
|
--enable-systemlibs
|
|
${EBO_EXTRA_ECONF}
|
|
)
|
|
|
|
[[ ${EMBASSY_PACKAGE} == yes ]] && \
|
|
append-cppflags "-I${EPREFIX}/usr/include/emboss"
|
|
|
|
autotools-utils_src_configure
|
|
}
|
|
|
|
EXPORT_FUNCTIONS src_prepare src_configure
|