45 lines
1.2 KiB
Bash
45 lines
1.2 KiB
Bash
# Copyright 1999-2010 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI="3"
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inherit eutils multilib toolchain-funcs
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DESCRIPTION="tRNA detection in large-scale genome sequences"
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HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
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SRC_URI="mirror://gentoo/${P}.tar.bz2"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="amd64 x86"
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IUSE=""
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RDEPEND="dev-lang/perl"
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DEPEND="${RDEPEND}"
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src_prepare() {
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epatch "${FILESDIR}"/${P}-glibc-2.10.patch
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epatch "${FILESDIR}"/${P}-ldflags.patch
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sed -e "s%BINDIR = \$(HOME)/bin%BINDIR = ${EPREFIX}/usr/bin%" \
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-e "s%LIBDIR = \$(HOME)/lib/tRNAscan-SE%LIBDIR = ${EPRFIX}/usr/$(get_libdir)/${PN}%" \
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-e "s%MANDIR = \$(HOME)/man%MANDIR = ${EPREFIX}/usr/share/man%" \
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-e "s%CC = gcc%CC = $(tc-getCC)%" \
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-e "s%CFLAGS = -O%CFLAGS = ${CFLAGS}%" \
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-i Makefile || die
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}
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src_install() {
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mv tRNAscan-SE.man tRNAscan-SE.man.1 || die
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dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 || die
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doman tRNAscan-SE.man.1 || die
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dodoc MANUAL README Release.history || die
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insinto /usr/$(get_libdir)/${PN}/
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doins *.cm gcode.* Dsignal TPCsignal || die
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insinto /usr/share/doc/${PF}
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doins Manual.ps || die
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}
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src_test() {
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make PATH="${S}:${PATH}" testrun || die
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}
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