35 lines
845 B
Bash
35 lines
845 B
Bash
# Copyright 1999-2010 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-1.3.1.ebuild,v 1.3 2010/01/03 14:19:01 pacho Exp $
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EAPI="2"
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MY_PV=${PV//./_}
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DESCRIPTION="SHort Read Mapping Package"
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HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/"
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SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz"
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LICENSE="as-is"
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SLOT="0"
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IUSE=""
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KEYWORDS="amd64 x86"
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DEPEND=""
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RDEPEND=""
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S="${WORKDIR}/SHRiMP_${MY_PV}"
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src_prepare() {
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sed -i -e '1 a #include <stdint.h>' common/dag_glue.cpp || die
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sed -i -e '1 a CXXFLAGS+= -O3 -mmmx -msse -msse2' \
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-e 's/-static//' "${S}/Makefile" || die
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}
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src_install() {
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rm bin/README
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dobin bin/* || die
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insinto /usr/share/${PN}
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doins -r utils || die
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dodoc HISTORY README TODO MEMORY
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}
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