39 lines
905 B
Bash
39 lines
905 B
Bash
# Copyright 1999-2011 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1-r1.ebuild,v 1.5 2011/12/18 19:53:20 phajdan.jr Exp $
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EAPI=4
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inherit autotools eutils
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DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
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HOMEPAGE="http://maq.sourceforge.net/"
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SRC_URI="
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mirror://sourceforge/${PN}/${P}.tar.bz2
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mirror://sourceforge/${PN}/calib-36.dat.gz"
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LICENSE="GPL-3"
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SLOT="0"
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IUSE=""
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KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
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RDEPEND="sys-libs/zlib"
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DEPEND="${RDEPEND}"
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src_prepare() {
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epatch \
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"${FILESDIR}"/${P}-flags.patch \
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"${FILESDIR}"/${P}-bfr-overfl.patch
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sed \
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-e '/ext_CFLAGS/s:-m64::g' \
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-i configure* || die
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eautoreconf
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}
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src_install() {
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default
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insinto /usr/share/maq
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doins "${WORKDIR}"/*.dat
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doman maq.1
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dodoc ${PN}.pdf
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}
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