47 lines
1.2 KiB
Bash
47 lines
1.2 KiB
Bash
# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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inherit epatch flag-o-matic toolchain-funcs
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MY_NCBI_BLAST_V=2.2.23+
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DESCRIPTION="RepeatMasker compatible version of NCBI BLAST+"
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HOMEPAGE="http://www.repeatmasker.org/RMBlast.html"
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SRC_URI="http://www.repeatmasker.org/rmblast-${PV}-ncbi-blast-${MY_NCBI_BLAST_V}-src.tar.gz
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https://dev.gentoo.org/~mgorny/dist/${P}-gcc47.patch.bz2"
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LICENSE="OSL-2.1"
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SLOT="0"
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IUSE=""
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KEYWORDS="~amd64 ~x86"
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RDEPEND="dev-libs/boost"
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DEPEND="${RDEPEND}
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app-arch/cpio"
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S="${WORKDIR}/${P}-ncbi-blast-${MY_NCBI_BLAST_V}-src/c++"
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src_prepare() {
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filter-ldflags -Wl,--as-needed
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sed \
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-e 's/-print-file-name=libstdc++.a//' \
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-e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
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-e "/DEF_FAST_FLAGS=/s:=\".*\":=\"${CFLAGS}\":g" \
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-e 's/2.95\* | 2.96\* | 3\.\* | 4\.\* )/2.95\* | 2.96\* | \[3-9\]\.\* )/g' \
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-i src/build-system/configure || die
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epatch "${WORKDIR}"/${P}-gcc47.patch
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}
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src_configure() {
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tc-export CXX CC
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"${S}"/configure --without-debug \
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--with-mt \
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--without-static \
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--with-dll \
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--prefix="${ED}"/opt/${PN} \
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--with-boost="${EPREFIX}/usr/include/boost" \
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|| die
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}
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