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42 lines
1005 B
42 lines
1005 B
# Copyright 1999-2013 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-9999.ebuild,v 1.2 2013/03/11 15:25:21 jlec Exp $
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EAPI=5
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EANT_BUILD_TARGET="dist"
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EANT_NEEDS_TOOLS="true"
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JAVA_ANT_REWRITE_CLASSPATH="true"
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inherit git-2 java-pkg-2 java-ant-2
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DESCRIPTION="The Genome Analysis Toolkit"
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HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
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SRC_URI=""
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EGIT_REPO_URI="https://github.com/broadgsa/gatk.git"
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LICENSE="MIT"
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SLOT="0"
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IUSE=""
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KEYWORDS=""
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COMMON_DEPS=""
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DEPEND="
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>=virtual/jdk-1.6
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dev-vcs/git
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${COMMON_DEPS}"
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RDEPEND="
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>=virtual/jre-1.6
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${COMMON_DEPS}"
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src_prepare() {
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sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die
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java-pkg-2_src_prepare
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}
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src_install() {
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java-pkg_dojar dist/*.jar
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java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar
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java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar
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}
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