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# Copyright 1999-2015 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=5
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DESCRIPTION="Codon usage tables calculated from GenBank"
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HOMEPAGE="http://www.kazusa.or.jp/codon/"
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SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
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SLOT="0"
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LICENSE="public-domain"
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# Minimal build keeps only the indexed files (if applicable) and the
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# documentation. The non-indexed database is not installed.
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IUSE="emboss minimal"
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KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
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DEPEND="emboss? ( sci-biology/emboss )"
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RDEPEND="${DEPEND}"
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RESTRICT="binchecks strip"
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src_compile() {
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if use emboss; then
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mkdir CODONS || die
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ebegin "Indexing CUTG for usage with EMBOSS."
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EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
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"Indexing CUTG failed."
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eend
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fi
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}
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src_install() {
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local file
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dodoc README CODON_LABEL SPSUM_LABEL
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if ! use minimal; then
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dodir /usr/share/${PN}
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mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \
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"Installing raw CUTG database failed."
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fi
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if use emboss; then
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dodir /usr/share/EMBOSS/data/CODONS
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cd CODONS || die
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for file in *; do
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mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS/ || die \
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"Installing the EMBOSS-indexed database failed."
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done
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fi
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}
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