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56 lines
1.2 KiB
56 lines
1.2 KiB
10 years ago
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# Copyright 1999-2014 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/seqan-1.4.2.ebuild,v 1.1 2014/10/17 13:51:56 jlec Exp $
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EAPI=5
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PYTHON_COMPAT=( python2_7 )
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inherit cmake-utils flag-o-matic python-single-r1
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DESCRIPTION="C++ Sequence Analysis Library"
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HOMEPAGE="http://www.seqan.de/"
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SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz"
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SLOT="0"
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LICENSE="BSD GPL-3"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE=""
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REQUIRED_USE="${PYTHON_REQUIRED_USE}"
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RDEPEND="${PYTHON_DEPS}
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sci-biology/samtools"
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DEPEND="${RDEPEND}"
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#S="${WORKDIR}"/${P}/cmake
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PATCHES=(
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"${FILESDIR}"/${P}-shared.patch
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"${FILESDIR}"/${P}-include.patch
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)
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src_prepare() {
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rm -f \
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util/cmake/FindZLIB.cmake \
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|| die
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touch extras/apps/seqan_flexbar/README || die
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sed \
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-e "s:share/doc:share/doc/${PF}:g" \
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-i docs/CMakeLists.txt util/cmake/SeqAnBuildSystem.cmake || die
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cmake-utils_src_prepare
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}
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src_configure() {
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local mycmakeargs=(
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-DZLIB_INCLUDE_DIRS="${EPREFIX}"/usr/include
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)
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cmake-utils_src_configure
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}
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src_install() {
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mkdir -p "${BUILD_DIR}"/docs/html || die
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cmake-utils_src_install
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chmod 755 "${ED}"/usr/bin/*sh || die
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}
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