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53 lines
1.5 KiB
53 lines
1.5 KiB
13 years ago
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# Copyright 1999-2011 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-1.0.18-r1.ebuild,v 1.1 2011/04/13 12:32:36 xarthisius Exp $
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EAPI="3"
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inherit eutils toolchain-funcs flag-o-matic
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MY_P=${PN}_${PV}
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DESCRIPTION="A sequence assembler for very short reads"
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HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
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SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
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LICENSE="GPL-2"
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SLOT="0"
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IUSE="-doc"
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KEYWORDS="~amd64 ~x86"
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DEPEND="doc? ( virtual/latex-base )"
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RDEPEND=""
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S=${WORKDIR}/${MY_P}
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src_prepare() {
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append-flags -O3 # as recommended by upstream
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epatch "${FILESDIR}"/${P}-gentoo-r1.diff
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use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
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}
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src_compile() {
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tc-export CC
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MAKE_XOPTS=""
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if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
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if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
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emake -j1 $MAKE_XOPTS || die
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emake -j1 $MAKE_XOPTS color || die
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}
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src_install() {
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dobin velvet{g,h,g_de,h_de} || die
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insinto /usr/share/${PN}
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doins -r contrib || die
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dodoc Manual.pdf CREDITS.txt ChangeLog || die
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}
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pkg_postinst() {
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elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
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elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
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elog "environment or /etc/make.conf, then re-emerge the package. For example:"
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elog " VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
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}
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