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# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit flag-o-matic toolchain-funcs
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MY_PV="${PV}_04-May-2020"
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DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package"
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HOMEPAGE="https://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml"
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SRC_URI="https://github.com/wrpearson/fasta36/archive/refs/tags/v${MY_PV}.tar.gz -> ${P}.tar.gz"
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S="${WORKDIR}/${PN}36-${MY_PV}"
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LICENSE="fasta"
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SLOT="0"
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KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
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IUSE="debug cpu_flags_x86_sse2 test"
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RESTRICT="!test? ( test )"
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BDEPEND="test? ( app-shells/tcsh )"
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src_prepare() {
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CC_ALT=
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CFLAGS_ALT=
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ALT=
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use debug && append-flags -DDEBUG
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if [[ "$(tc-getCC)" == *icc* ]]; then
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CC_ALT=icc
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ALT="${ALT}_icc"
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else
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CC_ALT="$(tc-getCC)"
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use x86 && ALT="32"
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use amd64 && ALT="64"
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fi
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if use cpu_flags_x86_sse2 ; then
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ALT="${ALT}_sse2"
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append-flags -msse2
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[[ "$(tc-getCC)" == *icc* ]] || append-flags -ffast-math
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fi
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export CC_ALT="${CC_ALT}"
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export ALT="${ALT}"
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eapply "${FILESDIR}"/${P}-ldflags.patch
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sed \
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-e 's:-ffast-math::g' \
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-i make/Makefile* || die
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eapply_user
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}
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src_compile() {
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emake -C src -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all
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}
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src_test() {
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cd test || die
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FASTLIBS="../conf" bash test.sh || die
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}
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src_install() {
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dobin bin/*
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pushd bin >/dev/null || die
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local i
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for i in *36; do
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dosym ${i} /usr/bin/${i%36}
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done
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popd >/dev/null || die
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insinto /usr/share/${PN}
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doins -r conf/. data seq
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doman doc/{prss3.1,fasta36.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1}
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dodoc FASTA_LIST README* doc/{README*,readme*,fasta*,changes*}
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}
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