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71 lines
2.0 KiB
71 lines
2.0 KiB
13 years ago
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--- meme_3.5.4/website/cgi-bin/meme.pl 2006-09-21 19:46:29.000000000 +0000
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+++ trunk/website/cgi-bin/meme.pl 2007-09-10 00:28:33.000000000 +0000
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@@ -1,6 +1,6 @@
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#!@WHICHPERL@
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##
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-## $Id: meme.pl 1339 2006-09-21 19:46:28Z tbailey $
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+## $Id: meme.pl 2054 2007-09-10 00:27:42Z tbailey $
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##
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## $Log$
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## Revision 1.12 2006/03/07 23:30:19 nadya
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@@ -467,21 +467,21 @@
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# check against allowed dna letters
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$x = $_;
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- $x =~ tr/ABCDGHKMNRSTUVWY//cd;
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+ $x =~ tr/ABCDGHKMNRSTUVWY*-//cd;
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$new = length $x;
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if ($old == $new) {
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"dna";
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} else {
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# check against allowed protein letters
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$x = $_;
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- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//cd;
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+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//cd;
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$new = length $x;
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if ($old == $new) {
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"protein";
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} else {
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# get the unknown letters
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$x = $_;
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- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//d;
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+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//d;
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&whine("
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Your sequences contained the following unrecognized letters: $x.
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<BR>
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--- meme_3.5.4/website/cgi-bin/mast.pl 2006-09-21 19:46:29.000000000 +0000
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+++ trunk/website/cgi-bin/mast.pl 2007-09-10 00:38:14.000000000 +0000
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@@ -1,6 +1,6 @@
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#!@WHICHPERL@
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##
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-## $Id: mast.pl 1339 2006-09-21 19:46:28Z tbailey $
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+## $Id: mast.pl 2055 2007-09-10 00:37:11Z tbailey $
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##
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## $Log$
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## Revision 1.8 2006/03/07 23:30:19 nadya
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@@ -479,21 +479,21 @@
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# check against allowed nucleotide letters
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$x = $_;
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- $x =~ tr/ABCDGHKMNRSTUVWY//cd;
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+ $x =~ tr/ABCDGHKMNRSTUVWY*-//cd;
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$new = length $x;
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if ($old == $new) {
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return("DNA");
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} else {
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# check against allowed protein letters
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$x = $_;
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- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//cd;
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+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//cd;
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$new = length $x;
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if ($old == $new) {
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return("PROTEIN");
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} else {
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# get the unknown letters
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$x = $_;
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- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//d;
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+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//d;
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&whine("
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Your sequences contained the following unrecognized letters: $x.
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<BR>
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