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54 lines
1.2 KiB
54 lines
1.2 KiB
10 years ago
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# Copyright 1999-2015 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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PERL_EXPORT_PHASE_FUNCTIONS=no
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inherit eutils perl-module toolchain-funcs
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DESCRIPTION="tRNA detection in large-scale genome sequences"
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HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
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SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE=""
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S="${WORKDIR}"/tRNAscan-SE-1.3.1/
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src_prepare() {
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epatch \
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"${FILESDIR}"/${P}-ldflags.patch
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sed \
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-e "s:BINDIR = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \
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-e "s:LIBDIR = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \
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-e "s:MANDIR = \$(HOME)/man:MANDIR = ${EPREFIX}/usr/share/man:" \
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-e "s:CC = gcc:CC = $(tc-getCC):" \
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-e "s:CFLAGS = -O:CFLAGS = ${CFLAGS}:" \
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-i Makefile || die
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perl_set_version
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}
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src_test() {
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emake PATH="${S}:${PATH}" testrun
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}
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src_install() {
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dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4
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newman tRNAscan-SE.man tRNAscan-SE.man.1
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dodoc MANUAL README Release.history
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insinto /usr/share/${PN}/
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doins *.cm gcode.* Dsignal TPCsignal
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dodoc Manual.ps
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insinto ${VENDOR_LIB}
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doins -r tRNAscanSE
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}
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