|
|
|
|
# Copyright 1999-2015 Gentoo Foundation
|
|
|
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
|
# $Id$
|
|
|
|
|
|
|
|
|
|
EAPI="5"
|
|
|
|
|
|
|
|
|
|
inherit perl-module git-2
|
|
|
|
|
|
|
|
|
|
SUBPROJECTS="+db +network +run"
|
|
|
|
|
|
|
|
|
|
DESCRIPTION="Perl tools for bioinformatics - Core modules"
|
|
|
|
|
HOMEPAGE="http://www.bioperl.org/"
|
|
|
|
|
SRC_URI=""
|
|
|
|
|
EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git
|
|
|
|
|
https://github.com/${PN}/${PN}-live.git"
|
|
|
|
|
|
|
|
|
|
LICENSE="Artistic GPL-2"
|
|
|
|
|
SLOT="0"
|
|
|
|
|
KEYWORDS=""
|
|
|
|
|
IUSE="-minimal graphviz ${SUBPROJECTS}"
|
|
|
|
|
|
|
|
|
|
CDEPEND="
|
|
|
|
|
dev-perl/Data-Stag
|
|
|
|
|
dev-perl/libwww-perl
|
|
|
|
|
!minimal? (
|
|
|
|
|
dev-perl/Ace
|
|
|
|
|
dev-perl/Bio-ASN1-EntrezGene
|
|
|
|
|
dev-perl/Spreadsheet-ParseExcel
|
|
|
|
|
dev-perl/Spreadsheet-WriteExcel
|
|
|
|
|
>=dev-perl/XML-SAX-0.15
|
|
|
|
|
dev-perl/Graph
|
|
|
|
|
dev-perl/SOAP-Lite
|
|
|
|
|
dev-perl/Array-Compare
|
|
|
|
|
dev-perl/SVG
|
|
|
|
|
dev-perl/XML-Simple
|
|
|
|
|
dev-perl/XML-Parser
|
|
|
|
|
dev-perl/XML-Twig
|
|
|
|
|
>=dev-perl/HTML-Parser-3.60
|
|
|
|
|
>=dev-perl/XML-Writer-0.4
|
|
|
|
|
dev-perl/Clone
|
|
|
|
|
dev-perl/XML-DOM
|
|
|
|
|
dev-perl/set-scalar
|
|
|
|
|
dev-perl/XML-XPath
|
|
|
|
|
dev-perl/XML-DOM-XPath
|
|
|
|
|
dev-perl/Algorithm-Munkres
|
|
|
|
|
dev-perl/Data-Stag
|
|
|
|
|
dev-perl/Math-Random
|
|
|
|
|
dev-perl/PostScript
|
|
|
|
|
dev-perl/Convert-Binary-C
|
|
|
|
|
dev-perl/SVG-Graph
|
|
|
|
|
)
|
|
|
|
|
graphviz? ( dev-perl/GraphViz )"
|
|
|
|
|
DEPEND="dev-perl/Module-Build
|
|
|
|
|
${CDEPEND}"
|
|
|
|
|
RDEPEND="${CDEPEND}"
|
|
|
|
|
PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
|
|
|
|
|
db? ( >=sci-biology/bioperl-db-${PV} )
|
|
|
|
|
network? ( >=sci-biology/bioperl-network-${PV} )
|
|
|
|
|
run? ( >=sci-biology/bioperl-run-${PV} )"
|
|
|
|
|
|
|
|
|
|
S="${WORKDIR}/BioPerl-${PV}"
|
|
|
|
|
|
|
|
|
|
src_configure() {
|
|
|
|
|
sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
|
|
|
|
|
-e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" \
|
|
|
|
|
-e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" \
|
|
|
|
|
|| die
|
|
|
|
|
if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
|
|
|
|
|
perl-module_src_configure
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
src_install() {
|
|
|
|
|
mydoc="AUTHORS BUGS FAQ"
|
|
|
|
|
perl-module_src_install
|
|
|
|
|
}
|
