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53 lines
1.2 KiB
53 lines
1.2 KiB
12 years ago
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makefile | 14 ++++++--------
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1 files changed, 6 insertions(+), 8 deletions(-)
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diff --git a/makefile b/makefile
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index db7c904..109488f 100644
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--- a/makefile
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+++ b/makefile
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@@ -10,18 +10,18 @@
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#
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USEMPI ?= no
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-64BIT_VERSION ?= yes
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+64BIT_VERSION ?= no
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USEREADLINE ?= yes
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CYGWIN_BUILD ?= no
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USECOMPRESSION ?= no
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MOTHUR_FILES="\"Enter_your_default_path_here\""
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RELEASE_DATE = "\"8/8/2012\""
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VERSION = "\"1.27.0\""
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-FORTAN_COMPILER = gfortran
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-FORTRAN_FLAGS =
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+FORTAN_COMPILER = ${FC}
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+FORTRAN_FLAGS = ${FCFLAGS}
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# Optimize to level 3:
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-CXXFLAGS += -O3
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+#CXXFLAGS += -O3
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ifeq ($(strip $(64BIT_VERSION)),yes)
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#if you are using centos uncomment the following lines
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@@ -69,7 +69,7 @@ endif
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ifeq ($(strip $(USEMPI)),yes)
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- CXX = mpic++
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+# CXX = mpic++
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CXXFLAGS += -DUSE_MPI
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endif
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@@ -95,11 +95,9 @@ OBJECTS=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
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OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
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OBJECTS+=$(patsubst %.f,%.o,$(wildcard *.f))
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-mothur : fortranSource $(OBJECTS) uchime
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+mothur : fortranSource $(OBJECTS)
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$(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
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- strip mothur
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-
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uchime:
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cd uchime_src && ./mk && mv uchime .. && cd ..
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