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62 lines
1.1 KiB
62 lines
1.1 KiB
7 years ago
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# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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PYTHON_COMPAT=( python2_7 )
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inherit autotools python-r1 toolchain-funcs
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DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
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HOMEPAGE="http://www.htslib.org/"
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SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
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IUSE="examples"
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REQUIRED_USE="${PYTHON_REQUIRED_USE}"
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RDEPEND="
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dev-lang/perl
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=sci-libs/htslib-${PV}*
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sys-libs/ncurses:0=
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sys-libs/zlib
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${PYTHON_DEPS}"
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DEPEND="${RDEPEND}
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virtual/pkgconfig"
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PATCHES=( "${FILESDIR}/${PN}-1.5-buildsystem.patch" )
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src_prepare() {
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default
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python_setup
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python_fix_shebang misc/varfilter.py
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# remove bundled htslib
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rm -r htslib-* || die
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eautoreconf
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}
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src_test() {
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local -x LD_LIBRARY_PATH="${S}"
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default
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}
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src_install() {
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default
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# install libbam and headers
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dolib.so libbam.so*
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insinto /usr/include/bam
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doins *.h
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if use examples; then
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dodoc -r examples
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docompress -x /usr/share/doc/${PF}/examples
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fi
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}
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