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# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit toolchain-funcs
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MY_P="${PN}_v${PV/./_}"
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DESCRIPTION="Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences"
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HOMEPAGE="http://probcons.stanford.edu/"
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SRC_URI="http://probcons.stanford.edu/${MY_P}.tar.gz"
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S="${WORKDIR}/${PN}"
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LICENSE="public-domain"
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SLOT="0"
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KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
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# Gnuplot is explicitly runtime-only, it's run using system()
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RDEPEND="
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!sci-geosciences/gmt
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sci-visualization/gnuplot"
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PATCHES=(
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"${FILESDIR}"/${P}-cxxflags.patch
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"${FILESDIR}"/gcc-4.3.patch
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"${FILESDIR}"/${P}-gcc-4.6.patch
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)
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src_compile() {
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emake \
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CXX="$(tc-getCXX)" \
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OPT_CXXFLAGS="${CXXFLAGS}"
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}
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src_install() {
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dobin probcons project makegnuplot
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# Overlap with imagemagick
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newbin compare compare-probcons
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dodoc README
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}
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pkg_postinst() {
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ewarn "The 'compare' binary is installed as 'compare-probcons'"
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ewarn "to avoid overlap with other packages."
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einfo "You may also want to download the user manual"
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einfo "from http://probcons.stanford.edu/manual.pdf"
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}
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