You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
48 lines
964 B
48 lines
964 B
7 years ago
|
# Copyright 1999-2017 Gentoo Foundation
|
||
|
# Distributed under the terms of the GNU General Public License v2
|
||
|
|
||
|
EAPI=6
|
||
|
|
||
|
inherit toolchain-funcs
|
||
|
|
||
|
DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
|
||
|
HOMEPAGE="http://www.repeatmasker.org/RepeatModeler.html"
|
||
|
SRC_URI="http://www.repeatmasker.org/${P^^}.tar.gz"
|
||
|
|
||
|
LICENSE="GPL-2"
|
||
|
SLOT="0"
|
||
|
IUSE="examples"
|
||
|
KEYWORDS="~amd64 ~x86"
|
||
|
|
||
|
RDEPEND="dev-lang/perl"
|
||
|
|
||
|
S=${WORKDIR}/${P^^}
|
||
|
|
||
|
PATCHES=(
|
||
|
"${FILESDIR}"/${PN}-1.08-buffer-overflow.patch
|
||
|
"${FILESDIR}"/${PN}-1.08-perl-shebangs.patch
|
||
|
)
|
||
|
|
||
|
src_prepare() {
|
||
|
default
|
||
|
sed -i "s|$path = \"\";|$path = \"${EPREFIX}/usr/libexec/${PN}\";|" scripts/recon.pl || die
|
||
|
}
|
||
|
|
||
|
src_compile() {
|
||
|
emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" -C src
|
||
|
}
|
||
|
|
||
|
src_install() {
|
||
|
dobin scripts/*
|
||
|
|
||
|
exeinto /usr/libexec/${PN}
|
||
|
doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
|
||
|
|
||
|
newdoc {00,}README
|
||
|
|
||
|
if use examples; then
|
||
|
insinto /usr/share/${PN}
|
||
|
doins -r Demos
|
||
|
fi
|
||
|
}
|