You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
48 lines
927 B
48 lines
927 B
6 years ago
|
# Copyright 1999-2018 Gentoo Authors
|
||
|
# Distributed under the terms of the GNU General Public License v2
|
||
|
|
||
|
EAPI=7
|
||
|
|
||
|
PYTHON_COMPAT=( python2_7 )
|
||
|
|
||
|
inherit python-single-r1
|
||
|
|
||
|
DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
|
||
|
HOMEPAGE="http://www.htslib.org"
|
||
|
SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
|
||
|
|
||
|
LICENSE="MIT"
|
||
|
SLOT="0"
|
||
|
KEYWORDS="~amd64 ~x86"
|
||
|
IUSE=""
|
||
|
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
|
||
|
|
||
|
RDEPEND="
|
||
|
dev-lang/perl
|
||
|
=sci-libs/htslib-${PV}*:=
|
||
|
sys-libs/zlib:=
|
||
|
${PYTHON_DEPS}"
|
||
|
DEPEND="${RDEPEND}"
|
||
|
|
||
|
PATCHES=(
|
||
|
"${FILESDIR}"/${PN}-1.5-buildsystem.patch
|
||
|
"${FILESDIR}"/${PN}-1.9-fix-shebangs.patch
|
||
|
)
|
||
|
|
||
|
src_prepare() {
|
||
|
default
|
||
|
|
||
|
python_fix_shebang misc/{guess-ploidy,plot-roh}.py
|
||
|
|
||
|
# remove bundled htslib
|
||
|
rm -r htslib-* || die
|
||
|
}
|
||
|
|
||
|
src_configure() {
|
||
|
econf \
|
||
|
--disable-bcftools-plugins \
|
||
|
--disable-libgsl \
|
||
|
--disable-configure-htslib \
|
||
|
--with-htslib=system
|
||
|
}
|