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110 lines
3.0 KiB
110 lines
3.0 KiB
7 years ago
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# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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PYTHON_COMPAT=( python2_7 )
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PYTHON_REQ_USE="tk"
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inherit distutils-r1 eutils fdo-mime flag-o-matic versionator
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DESCRIPTION="A Python-extensible molecular graphics system"
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HOMEPAGE="http://www.pymol.org/"
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SRC_URI="
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https://dev.gentoo.org/~jlec/distfiles/${PN}-1.8.4.0.png.xz
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mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2
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"
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# git archive -v --prefix=${P}/ master -o ${P}.tar.xz
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RESTRICT="mirror"
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LICENSE="PSF-2.2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
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IUSE="web"
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DEPEND="
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dev-libs/msgpack[cxx]
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/pyopengl[${PYTHON_USEDEP}]
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media-libs/freeglut
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media-libs/freetype:2
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media-libs/glew:0=
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media-libs/libpng:0=
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media-video/mpeg-tools
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sys-libs/zlib
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virtual/python-pmw[${PYTHON_USEDEP}]
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!sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}]
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web? ( !dev-python/webpy[${PYTHON_USEDEP}] )"
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RDEPEND="${DEPEND}"
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S="${WORKDIR}"/${PN}
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python_prepare_all() {
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sed \
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-e "s:\"/usr:\"${EPREFIX}/usr:g" \
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-e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \
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-e "/import/s:argparse:argparseX:g" \
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-i setup.py || die
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sed \
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-e "s:/opt/local:${EPREFIX}/usr:g" \
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-e '/ext_comp_args/s:\[.*\]:[]:g' \
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-i setup.py || die
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append-cxxflags -std=c++0x
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distutils-r1_python_prepare_all
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}
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python_install() {
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distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol"
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sed \
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-e '1d' \
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-e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \
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-e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \
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-e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \
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-i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die
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}
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python_install_all() {
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distutils-r1_python_install_all
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sed \
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-e '1i#!/usr/bin/env python' \
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"${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die
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python_foreach_impl python_doscript "${T}"/${PN}
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# These environment variables should not go in the wrapper script, or else
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# it will be impossible to use the PyMOL libraries from Python.
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cat >> "${T}"/20pymol <<- EOF
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PYMOL_PATH="${EPREFIX}/usr/share/pymol"
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PYMOL_DATA="${EPREFIX}/usr/share/pymol/data"
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PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts"
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EOF
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doenvd "${T}"/20pymol
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newicon "${WORKDIR}"/${PN}-1.8.4.0.png ${PN}.png
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make_desktop_entry ${PN} PyMol ${PN} \
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"Graphics;Education;Science;Chemistry;" \
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"MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;"
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if ! use web; then
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rm -rf "${D}/$(python_get_sitedir)/web" || die
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fi
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rm -f "${ED}"/usr/share/${PN}/LICENSE || die
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}
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pkg_postinst() {
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fdo-mime_desktop_database_update
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fdo-mime_mime_database_update
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optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr
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}
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pkg_postrm() {
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fdo-mime_desktop_database_update
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fdo-mime_mime_database_update
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}
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