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# Copyright 1999-2015 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=5
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inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator
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MY_PV="$(replace_version_separator 2 .r)"
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MY_P="T-COFFEE_distribution_Version_${MY_PV}"
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DESCRIPTION="A multiple sequence alignment package"
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HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
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SRC_URI="http://www.tcoffee.org/Packages/Stable/Version_${MY_PV}/${MY_P}.tar.gz"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="amd64 ppc ~ppc64 x86 ~amd64-linux ~x86-linux"
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IUSE="examples"
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RDEPEND="
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sci-biology/clustalw
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sci-chemistry/tm-align"
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DEPEND=""
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S="${WORKDIR}/${MY_P}"
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die_compile() {
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echo
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eerror "If you experience an internal compiler error (consult the above"
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eerror "messages), try compiling t-coffee using very modest compiler flags."
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eerror "See bug #114745 on the Gentoo Bugzilla for more details."
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die "Compilation failed"
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}
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src_prepare() {
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epatch "${FILESDIR}"/${P}-flags.patch
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}
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src_compile() {
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[[ $(gcc-version) == "3.4" ]] || \
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[[ $(gcc-version) == "4.1" ]] && \
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append-flags -fno-unit-at-a-time
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emake \
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CC="$(tc-getCC)" \
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CFLAGS="${CFLAGS}" \
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-C t_coffee_source t_coffee
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}
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src_install() {
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dobin t_coffee_source/t_coffee
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if use examples; then
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insinto /usr/share/${PN}
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doins -r example
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fi
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}
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