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# Copyright 1999-2014 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=4
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inherit eutils toolchain-funcs
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MY_P=GlimmerHMM
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DESCRIPTION="A eukaryotic gene finding system from TIGR"
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HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
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SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz"
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LICENSE="Artistic"
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SLOT="0"
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IUSE=""
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KEYWORDS="amd64 x86"
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src_unpack() {
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unpack ${A}
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mv GlimmerHMM ${P}
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}
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src_prepare() {
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sed \
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-e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/libexec/'${PN}'/training_utils"|' \
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-e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' \
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-i "${S}/train/trainGlimmerHMM" || die
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epatch "${FILESDIR}"/${PV}-gentoo.patch
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tc-export CC CXX
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}
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src_compile() {
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emake -C "${S}/sources"
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emake -C "${S}/train"
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}
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src_install() {
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dobin sources/glimmerhmm train/trainGlimmerHMM
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insinto /usr/share/${PN}/lib
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doins train/*.pm
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insinto /usr/share/${PN}/models
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doins -r trained_dir/*
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exeinto /usr/libexec/${PN}/training_utils
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doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore}
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dodoc README.first train/readme.train
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}
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