|
|
|
# Copyright 1999-2012 Gentoo Foundation
|
|
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1111.ebuild,v 1.4 2012/03/07 20:49:46 ranger Exp $
|
|
|
|
|
|
|
|
EAPI="3"
|
|
|
|
|
|
|
|
MY_PV=${PV#1}
|
|
|
|
|
|
|
|
DESCRIPTION="A restriction enzyme database"
|
|
|
|
HOMEPAGE="http://rebase.neb.com"
|
|
|
|
SRC_URI="
|
|
|
|
mirror://gentoo/${P}.tar.xz
|
|
|
|
http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
|
|
|
|
|
|
|
|
SLOT="0"
|
|
|
|
# Minimal build keeps only the indexed files (if applicable) and the
|
|
|
|
# documentation. The non-indexed database is not installed.
|
|
|
|
IUSE="emboss minimal"
|
|
|
|
LICENSE="public-domain"
|
|
|
|
KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
|
|
|
|
|
|
|
|
RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
|
|
|
|
DEPEND="${RDEPEND}"
|
|
|
|
|
|
|
|
RESTRICT="binchecks strip"
|
|
|
|
|
|
|
|
src_compile() {
|
|
|
|
if use emboss; then
|
|
|
|
echo; einfo "Indexing Rebase for usage with EMBOSS."
|
|
|
|
mkdir REBASE
|
|
|
|
EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
|
|
|
|
-protofile proto.${MY_PV} -equivalences \
|
|
|
|
|| die "Indexing Rebase failed."
|
|
|
|
echo
|
|
|
|
fi
|
|
|
|
}
|
|
|
|
|
|
|
|
src_install() {
|
|
|
|
if ! use minimal; then
|
|
|
|
insinto /usr/share/${PN}
|
|
|
|
doins withrefm.${MY_PV} proto.${MY_PV} || die \
|
|
|
|
"Failed to install raw database."
|
|
|
|
fi
|
|
|
|
newdoc REBASE.DOC README || die "Failed to install documentation."
|
|
|
|
if use emboss; then
|
|
|
|
insinto /usr/share/EMBOSS/data/REBASE
|
|
|
|
doins REBASE/embossre.{enz,ref,sup} || die \
|
|
|
|
"Failed to install EMBOSS data files."
|
|
|
|
insinto /usr/share/EMBOSS/data
|
|
|
|
doins REBASE/embossre.equ \
|
|
|
|
|| die "Failed to install enzyme prototypes file."
|
|
|
|
fi
|
|
|
|
}
|