66 lines
1.5 KiB
Bash
66 lines
1.5 KiB
Bash
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# Copyright 1999-2013 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-2.0.3.ebuild,v 1.1 2013/05/29 06:13:10 jlec Exp $
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EAPI=5
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inherit multilib toolchain-funcs
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DESCRIPTION="maximum likelihood superpositioning and analysis of macromolecular structures"
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HOMEPAGE="http://www.theseus3d.org/"
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SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz"
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SLOT="0"
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LICENSE="GPL-3"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="examples"
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RDEPEND="
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sci-libs/gsl
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sci-biology/probcons
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sci-biology/mafft
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sci-biology/t-coffee
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sci-biology/kalign
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sci-biology/clustalw
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sci-biology/muscle
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)"
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DEPEND="${RDEPEND}
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virtual/pkgconfig"
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S="${WORKDIR}"/${PN}_src/
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src_prepare() {
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cat >> make.inc <<- EOF
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ARCH = $(tc-getAR)
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ARCHFLAGS = -rvs
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RANLIB = $(tc-getRANLIB)
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LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir)
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SYSLIBS = $(pkg-config --libs gsl) -lpthread
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LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus
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LIBDIR = -L./lib
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INSTALLDIR = "${ED}"/usr/bin
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OPT =
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WARN =
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CFLAGS = ${CFLAGS} \$(WARN)
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CC = $(tc-getCC)
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EOF
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sed \
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-e 's|theseus:|theseus: libs|g' \
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-e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \
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-i Makefile || die
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sed \
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-e 's:/usr/bin/sed:sed:g' \
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-e "s:/usr/local/bin/:${EPREFIX}/usr/bin/:g" \
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-e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \
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-i theseus_align || die
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}
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src_install() {
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dobin theseus theseus_align
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dodoc theseus_man.pdf README AUTHORS
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use examples && insinto /usr/share/${PN} && doins -r examples
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}
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