91 lines
1.8 KiB
Bash
91 lines
1.8 KiB
Bash
|
# Copyright 1999-2011 Gentoo Foundation
|
||
|
|
# Distributed under the terms of the GNU General Public License v2
|
||
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/procheck/procheck-3.5.4-r1.ebuild,v 1.4 2011/06/21 15:58:06 jlec Exp $
|
||
|
|
|
||
|
|
EAPI="3"
|
||
|
|
|
||
|
|
inherit eutils fortran-2 toolchain-funcs versionator
|
||
|
|
|
||
|
|
DESCRIPTION="Checks the stereochemical quality of a protein structure"
|
||
|
|
HOMEPAGE="http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html"
|
||
|
|
SRC_URI="
|
||
|
|
${P}.tar.gz ${P}-README
|
||
|
|
doc? ( ${P}-manual.tar.gz )"
|
||
|
|
|
||
|
|
LICENSE="procheck"
|
||
|
|
SLOT="0"
|
||
|
|
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
|
||
|
|
IUSE="doc"
|
||
|
|
|
||
|
|
RDEPEND="
|
||
|
|
virtual/fortran
|
||
|
|
app-shells/tcsh"
|
||
|
|
DEPEND="${RDEPEND}"
|
||
|
|
|
||
|
|
RESTRICT="fetch"
|
||
|
|
|
||
|
|
S="${WORKDIR}/${PN}"
|
||
|
|
|
||
|
|
pkg_nofetch() {
|
||
|
|
elog "Please visit http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"
|
||
|
|
elog "And follow the instruction for downloading."
|
||
|
|
elog "Files should be stored in following way"
|
||
|
|
elog "${PN}.tar.gz -> ${DISTDIR}/${P}.tar.gz"
|
||
|
|
elog "README -> ${DISTDIR}/${P}-README"
|
||
|
|
if use doc; then
|
||
|
|
elog "manual.tar.gz -> ${DISTDIR}/${P}-manual.tar.gz"
|
||
|
|
fi
|
||
|
|
}
|
||
|
|
|
||
|
|
src_prepare() {
|
||
|
|
epatch "${FILESDIR}"/${PV}-ldflags.patch
|
||
|
|
}
|
||
|
|
|
||
|
|
src_compile() {
|
||
|
|
emake \
|
||
|
|
F77=$(tc-getFC) \
|
||
|
|
CC=$(tc-getCC) \
|
||
|
|
COPTS="${CFLAGS}" \
|
||
|
|
FOPTS="${FFLAGS}" \
|
||
|
|
|| die "emake failed"
|
||
|
|
}
|
||
|
|
|
||
|
|
src_install() {
|
||
|
|
for i in *.scr; do
|
||
|
|
newbin ${i} ${i%.scr} || die
|
||
|
|
done
|
||
|
|
|
||
|
|
exeinto /usr/$(get_libdir)/${PN}/
|
||
|
|
doexe \
|
||
|
|
anglen \
|
||
|
|
clean \
|
||
|
|
rmsdev \
|
||
|
|
secstr \
|
||
|
|
gfac2pdb \
|
||
|
|
pplot \
|
||
|
|
bplot \
|
||
|
|
tplot \
|
||
|
|
mplot \
|
||
|
|
vplot \
|
||
|
|
viol2pdb \
|
||
|
|
wirplot \
|
||
|
|
nb || die
|
||
|
|
dodoc "${DISTDIR}"/${P}-README || die
|
||
|
|
|
||
|
|
insinto /usr/$(get_libdir)/${PN}/
|
||
|
|
doins *.dat *.prm || die
|
||
|
|
newins resdefs.dat resdefs.data || die
|
||
|
|
|
||
|
|
cat >> "${T}"/30${PN} <<- EOF
|
||
|
|
prodir="${EPREFIX}/usr/$(get_libdir)/${PN}/"
|
||
|
|
EOF
|
||
|
|
|
||
|
|
doenvd "${T}"/30${PN} || die
|
||
|
|
|
||
|
|
if use doc; then
|
||
|
|
pushd "${WORKDIR}"
|
||
|
|
dohtml -r manual || die
|
||
|
|
popd
|
||
|
|
fi
|
||
|
|
}
|