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# Copyright 1999-2014 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild,v 1.6 2014/08/09 22:46:03 zlogene Exp $
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EAPI="5"
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inherit perl-module
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SUBPROJECTS="+db +network +run"
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DESCRIPTION="Perl tools for bioinformatics - Core modules"
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HOMEPAGE="http://www.bioperl.org/"
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SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
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LICENSE="Artistic GPL-2"
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SLOT="0"
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KEYWORDS="amd64 x86"
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IUSE="-minimal graphviz ${SUBPROJECTS}"
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CDEPEND="dev-perl/Data-Stag
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dev-perl/libwww-perl
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!minimal? (
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dev-perl/Ace
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dev-perl/Spreadsheet-ParseExcel
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dev-perl/Spreadsheet-WriteExcel
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>=dev-perl/XML-SAX-0.15
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dev-perl/Graph
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dev-perl/SOAP-Lite
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dev-perl/Array-Compare
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dev-perl/SVG
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dev-perl/XML-Simple
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dev-perl/XML-Parser
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dev-perl/XML-Twig
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>=dev-perl/HTML-Parser-3.60
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>=dev-perl/XML-Writer-0.4
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dev-perl/Clone
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dev-perl/XML-DOM
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dev-perl/set-scalar
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dev-perl/XML-XPath
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dev-perl/XML-DOM-XPath
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dev-perl/Algorithm-Munkres
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dev-perl/Data-Stag
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dev-perl/Math-Random
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dev-perl/PostScript
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dev-perl/Convert-Binary-C
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dev-perl/SVG-Graph
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)
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graphviz? ( dev-perl/GraphViz )"
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DEPEND="virtual/perl-Module-Build
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${CDEPEND}"
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RDEPEND="${CDEPEND}"
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PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
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db? ( >=sci-biology/bioperl-db-${PV} )
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network? ( >=sci-biology/bioperl-network-${PV} )
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run? ( >=sci-biology/bioperl-run-${PV} )"
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S="${WORKDIR}/BioPerl-${PV}"
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src_configure() {
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sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
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-e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" || die
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if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
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perl-module_src_configure
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}
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src_install() {
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mydoc="AUTHORS BUGS FAQ"
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perl-module_src_install
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}
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