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76 lines
2.3 KiB
76 lines
2.3 KiB
8 years ago
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Use portable shebangs instead of hardcoding interpreters
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See also: https://blogs.gentoo.org/mgorny/2016/02/08/a-quick-note-on-portable-shebangs/
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--- a/scripts/dnadiff.pl
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+++ b/scripts/dnadiff.pl
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@@ -1,4 +1,4 @@
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-#!__PERL_PATH -w
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+#!/usr/bin/env perl
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#-------------------------------------------------------------------------------
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# Programmer: Adam M Phillippy, University of Maryland
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--- a/scripts/exact-tandems.csh
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+++ b/scripts/exact-tandems.csh
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@@ -1,4 +1,4 @@
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-#!__CSH_PATH -f
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+#!/usr/bin/env csh
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#
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# Find exact tandem repeats in specified file involving an
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# exact duplicate of at least the specified length
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--- a/scripts/mapview.pl
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+++ b/scripts/mapview.pl
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@@ -1,4 +1,4 @@
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-#!__PERL_PATH
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+#!/usr/bin/env perl
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use lib "__SCRIPT_DIR";
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use Foundation;
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--- a/scripts/mummerplot.pl
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+++ b/scripts/mummerplot.pl
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@@ -1,4 +1,4 @@
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-#!__PERL_PATH
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+#!/usr/bin/env perl
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################################################################################
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# Programmer: Adam M Phillippy, The Institute for Genomic Research
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--- a/scripts/nucmer2xfig.pl
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+++ b/scripts/nucmer2xfig.pl
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@@ -1,4 +1,4 @@
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-#!__PERL_PATH
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+#!/usr/bin/env perl
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# (c) Steven Salzberg 2001
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# Make an xfig plot for a comparison of a reference chromosome (or single
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# molecule) versus a multifasta file of contigs from another genome.
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--- a/scripts/nucmer.pl
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+++ b/scripts/nucmer.pl
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@@ -1,4 +1,4 @@
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-#!__PERL_PATH
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+#!/usr/bin/env perl
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#-------------------------------------------------------------------------------
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# Programmer: Adam M Phillippy, The Institute for Genomic Research
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--- a/scripts/promer.pl
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+++ b/scripts/promer.pl
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@@ -1,4 +1,4 @@
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-#!__PERL_PATH
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+#!/usr/bin/env perl
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#-------------------------------------------------------------------------------
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# Programmer: Adam M Phillippy, The Institute for Genomic Research
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--- a/scripts/run-mummer1.csh
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+++ b/scripts/run-mummer1.csh
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@@ -1,4 +1,4 @@
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-#!__CSH_PATH -f
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+#!/usr/bin/env csh
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#
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# **SEVERELY** antiquated script for running the mummer 1 suite
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# -r option reverse complements the query sequence, coordinates of the reverse
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--- a/scripts/run-mummer3.csh
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+++ b/scripts/run-mummer3.csh
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@@ -1,4 +1,4 @@
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-#!__CSH_PATH -f
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+#!/usr/bin/env csh
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#
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# for running the basic mummer 3 suite, should use nucmer instead when possible
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# to avoid the confusing reverse coordinate system of the raw programs.
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