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75 lines
2.3 KiB
75 lines
2.3 KiB
3 years ago
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--- a/bfast/AlignNTSpace.c
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+++ b/bfast/AlignNTSpace.c
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@@ -478,7 +478,7 @@
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}
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}
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-inline void AlignNTSpaceFillInCell(char *read,
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+void AlignNTSpaceFillInCell(char *read,
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int32_t readLength,
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char *reference,
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int32_t referenceLength,
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--- a/bfast/AlignNTSpace.h
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+++ b/bfast/AlignNTSpace.h
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@@ -10,5 +10,5 @@
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void AlignNTSpaceRecoverAlignmentFromMatrix(AlignedEntry*, AlignMatrix*, char*, int, char*, int, int32_t, int32_t, int, int32_t, char, int);
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void AlignNTSpaceInitializeAtStart(AlignMatrix*, ScoringMatrix*, int32_t, int32_t);
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void AlignNTSpaceInitializeToExtend(AlignMatrix*, ScoringMatrix*, int32_t, int32_t, int32_t, int32_t);
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-inline void AlignNTSpaceFillInCell(char*, int32_t, char*, int32_t, ScoringMatrix*, AlignMatrix*, int32_t, int32_t, int32_t, int32_t);
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+void AlignNTSpaceFillInCell(char*, int32_t, char*, int32_t, ScoringMatrix*, AlignMatrix*, int32_t, int32_t, int32_t, int32_t);
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#endif
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--- a/bfast/BLib.c
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+++ b/bfast/BLib.c
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@@ -90,7 +90,7 @@
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}
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/* TODO */
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-inline char ToUpper(char a)
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+char ToUpper(char a)
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{
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if(97 <= a && a < 122) return (char)(a - 32);
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return a;
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--- a/bfast/BLib.h
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+++ b/bfast/BLib.h
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@@ -16,7 +16,7 @@
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int ParseFastaHeaderLine(char*);
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char ToLower(char);
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void ToLowerRead(char*, int);
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-inline char ToUpper(char);
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+char ToUpper(char);
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void ToUpperRead(char*, int);
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void ReverseRead(char*, char*, int);
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void ReverseReadFourBit(int8_t*, int8_t*, int);
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--- a/bfast/ScoringMatrix.c
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+++ b/bfast/ScoringMatrix.c
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@@ -98,14 +98,14 @@
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return 1;
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}
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-inline int32_t ScoringMatrixGetNTScore(char a,
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+int32_t ScoringMatrixGetNTScore(char a,
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char b,
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ScoringMatrix *sm)
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{
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return (ToUpper(a) == ToUpper(b)) ? sm->ntMatch : sm->ntMismatch;
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}
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-inline int32_t ScoringMatrixGetColorScore(char a,
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+int32_t ScoringMatrixGetColorScore(char a,
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char b,
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ScoringMatrix *sm)
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{
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--- a/bfast/ScoringMatrix.h
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+++ b/bfast/ScoringMatrix.h
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@@ -3,8 +3,8 @@
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#include "BLibDefinitions.h"
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-inline int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*);
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-inline int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*);
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+int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*);
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+int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*);
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int ScoringMatrixRead(char*, ScoringMatrix*, int);
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void ScoringMatrixInitialize(ScoringMatrix*);
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