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# Copyright 1999-2020 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit toolchain-funcs
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DESCRIPTION="Prototype ncRNA genefinder"
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HOMEPAGE="http://selab.janelia.org/software.html"
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SRC_URI="mirror://gentoo/${P}.tar.bz2"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="
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dev-lang/perl
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sci-biology/hmmer:2"
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DEPEND="${RDEPEND}"
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PATCHES=(
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"${FILESDIR}"/${P}-glibc-2.10.patch
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"${FILESDIR}"/${P}-ldflags.patch
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)
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src_prepare() {
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default
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rm -v squid*/*.a || die
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}
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src_configure() {
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tc-export AR CC RANLIB
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}
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src_compile() {
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local d
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for d in squid squid02 src; do
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emake -C ${d}
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done
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}
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src_install() {
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dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
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newdoc 00README README
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dodoc -r documentation/.
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insinto /usr/share/${PN}/data
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doins -r lib/.
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insinto /usr/share/${PN}/demos
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doins -r Demos/.
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# Sets the path to the QRNA data files
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doenvd "${FILESDIR}"/26qrna
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}
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