root
7 years ago
parent
3a1c72ddd8
commit
23eb49d472
@ -1,2 +1 @@
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DIST zuluCrypt-5.0.1.tar.bz2 785950 SHA256 53a970173c7f87cf3b2c4a9bf12c36fa7796147d99235cc37de9aa2cbcbddcde SHA512 69ffd13957ff36783d20caf489d35a018ef5eee4db6627789525be53dc39fe0245c16e95449de18eabef11a46480501647bdc7bd3072c92fecbcb43a7e1ec2eb WHIRLPOOL 40207e9a798676ecfc6a2959e4edb79bc770ee749844a005e15fb4227ea761e8ef29757ea1710b40248c861df69312354191e7311069eaf2f42c983d196f3e9c
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DIST zuluCrypt-5.1.0.tar.bz2 1610597 SHA256 dd57be9bcee64f7f4427f4a80e31bf8796d3ad7889f6c3bd78597ff14c1ba520 SHA512 b916d43f8c889f1593c506d95360b195f0639024463eb77b5b21b544468f99719b877d8c94725504305f307efe5cb18e203dc8f9b015bd55825dc1d4fffb42f0 WHIRLPOOL 72e202888b7c6cfc5fcc5720430c92813c7c313d04a1d31d432b942e0553450024c5a1a4e2cbb79359e4fa8276d7874a4d507721744a707745f1cf951d19510a
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@ -1,43 +0,0 @@
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From b7e0ef69e6cbddcc0c6a5a28793822cdfe97395a Mon Sep 17 00:00:00 2001
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From: Michael Palimaka <kensington@gentoo.org>
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Date: Sat, 5 Nov 2016 22:00:00 +1100
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Subject: [PATCH] Remove unused KF5Notifications dependency.
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---
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zuluCrypt-gui/lxqt_wallet/frontend/CMakeLists.txt | 7 +++----
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1 file changed, 3 insertions(+), 4 deletions(-)
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diff --git a/zuluCrypt-gui/lxqt_wallet/frontend/CMakeLists.txt b/zuluCrypt-gui/lxqt_wallet/frontend/CMakeLists.txt
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index 89c420a..0ac1c95 100644
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--- a/zuluCrypt-gui/lxqt_wallet/frontend/CMakeLists.txt
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+++ b/zuluCrypt-gui/lxqt_wallet/frontend/CMakeLists.txt
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@@ -70,9 +70,8 @@ else()
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find_package(Qt5Core REQUIRED)
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find_package(KF5Wallet QUIET)
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- find_package(KF5Notifications QUIET)
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- if(KF5Wallet_FOUND AND KF5Notifications_FOUND )
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+ if(KF5Wallet_FOUND)
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file(APPEND ${PROJECT_BINARY_DIR}/storage_manager.h "\n#define HAS_KWALLET_SUPPORT 1\n")
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SET(KDE_SUPPORT "true")
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SET(KWALLET_SUPPORT "true")
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@@ -195,13 +194,13 @@ if(KDE_SUPPORT)
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target_link_libraries(lxqt-wallet secretlib)
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target_link_libraries(lxqt-wallet "${Qt5Widgets_LIBRARIES}")
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target_link_libraries(lxqt-wallet "${Qt5Core_LIBRARIES}")
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- target_link_libraries(lxqt-wallet KF5::Wallet KF5::Notifications)
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+ target_link_libraries(lxqt-wallet KF5::Wallet)
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else()
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Qt5_WRAP_CPP(MOC ${MOC_FILES_1})
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add_library(lxqt-wallet ${LIBRARY_TYPE} ${UI} ${SRC_1} ${MOC})
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target_link_libraries(lxqt-wallet "${Qt5Widgets_LIBRARIES}")
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target_link_libraries(lxqt-wallet "${Qt5Core_LIBRARIES}")
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- target_link_libraries(lxqt-wallet KF5::Wallet KF5::Notifications)
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+ target_link_libraries(lxqt-wallet KF5::Wallet)
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endif()
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else()
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if(SECRET_SUPPORT)
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--
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2.7.3
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@ -1,52 +0,0 @@
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# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=6
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inherit cmake-utils
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DESCRIPTION="Front end to cryptsetup"
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HOMEPAGE="https://mhogomchungu.github.io/zuluCrypt/"
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SRC_URI="https://github.com/mhogomchungu/zuluCrypt/releases/download/${PV}/zuluCrypt-${PV}.tar.bz2"
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LICENSE="GPL-2+"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="gnome +gui kde udev"
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REQUIRED_USE="kde? ( gui )"
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CDEPEND="
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dev-libs/libgcrypt:0=
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sys-apps/util-linux
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sys-fs/cryptsetup
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gnome? ( app-crypt/libsecret )
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gui? (
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dev-libs/libpwquality
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dev-qt/qtcore:5
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dev-qt/qtgui:5
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dev-qt/qtnetwork:5
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dev-qt/qtwidgets:5
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kde? ( kde-frameworks/kwallet:5 )
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)
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"
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RDEPEND="${CDEPEND}
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udev? ( virtual/udev )"
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DEPEND="${CDEPEND}
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virtual/pkgconfig
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"
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PATCHES=( "${FILESDIR}/${P}-unused-dep.patch" )
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src_configure() {
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local mycmakeargs=(
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-DLIB_SUFFIX="$(get_libdir)"
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-DNOGNOME=$(usex !gnome)
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-DNOGUI=$(usex !gui)
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-DNOKDE=$(usex !kde)
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-DUDEVSUPPORT=$(usex udev)
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)
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cmake-utils_src_configure
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}
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@ -0,0 +1,228 @@
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# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=6
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PYTHON_COMPAT=( python2_7 )
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PYTHON_REQ_USE="tk?"
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CMAKE_MAKEFILE_GENERATOR=ninja
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inherit cmake-utils eutils fdo-mime flag-o-matic gnome2 multilib python-single-r1
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DESCRIPTION="Desktop publishing (DTP) and layout program"
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HOMEPAGE="http://www.scribus.net/"
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SRC_URI="mirror://sourceforge/project/${PN}/${PN}-devel/${PV}/${P}.tar.xz"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="+boost debug examples graphicsmagick hunspell +minimal osg +pdf scripts templates tk"
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#a=$((ls resources/translations/scribus.*ts | sed -e 's:\.: :g' | awk '{print $2}'; ls resources/loremipsum/*xml | sed -e 's:\.: :g' -e 's:loremipsum\/: :g'| awk '{print $2}'; ls resources/dicts/hyph*dic | sed -e 's:\.: :g' -e 's:hyph_: :g' | awk '{print $2}'; ls resources/dicts/README_*txt | sed -e 's:_hyph::g' -e 's:\.: :g' -e 's:README_: :g' | awk '{print $2}') | sort | uniq); echo $a
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IUSE_LINGUAS=" af ar bg br ca ca_ES cs cs_CZ cy cy_GB da da_DK de de@1901 de_CH de_DE el en_AU en_GB en_US eo es es_ES et eu fi fi_FI fr gl he hr hu hu_HU ia id id_ID is is_IS it ja ko ku la lt lt_LT nb_NO nl nn_NO pl pl_PL pt pt_BR pt_PT ro ro_RO ru ru_RU sa sk sk_SK sl sl_SI sq sr sv sv_SE th_TH tr uk uk_UA zh_CN zh_TW"
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IUSE+=" ${IUSE_LINGUAS// / linguas_}"
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REQUIRED_USE="
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${PYTHON_REQUIRED_USE}
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tk? ( scripts )"
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# osg
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# couple of third_party libs bundled
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COMMON_DEPEND="
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${PYTHON_DEPS}
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app-text/libmspub
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app-text/poppler:=
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dev-libs/hyphen
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dev-libs/librevenge
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dev-libs/libxml2
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dev-qt/qtcore:5
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dev-qt/qtgui:5
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dev-qt/qtnetwork:5
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dev-qt/qtopengl:5
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dev-qt/qtprintsupport:5
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dev-qt/qtquickcontrols:5
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dev-qt/qtwidgets:5
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dev-qt/qtxml:5
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media-libs/fontconfig
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media-libs/freetype:2
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media-libs/lcms:2
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media-libs/libcdr
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media-libs/libpagemaker
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media-libs/libpng:0=
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media-libs/libvisio
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media-libs/tiff:0
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net-print/cups
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sys-libs/zlib[minizip]
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virtual/jpeg:0=
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>=x11-libs/cairo-1.10.0[X,svg]
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boost? ( >=dev-libs/boost-1.62:= )
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hunspell? ( app-text/hunspell )
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graphicsmagick? ( media-gfx/graphicsmagick )
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osg? ( dev-games/openscenegraph )
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pdf? ( app-text/podofo:0= )
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scripts? ( dev-python/pillow[tk?,${PYTHON_USEDEP}] )
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tk? ( dev-python/pillow[tk?,${PYTHON_USEDEP}] )
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"
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RDEPEND="${COMMON_DEPEND}
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app-text/ghostscript-gpl"
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DEPEND="${COMMON_DEPEND}
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dev-qt/linguist-tools:5
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virtual/pkgconfig"
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PATCHES=(
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"${FILESDIR}"/${PN}-1.5.0-docdir.patch
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"${FILESDIR}"/${P}-fpic.patch
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"${FILESDIR}"/${P}-cmake-qt57.patch
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"${FILESDIR}"/${P}-qt57-build.patch
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"${FILESDIR}"/${P}-cxx-build.patch
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"${FILESDIR}"/${P}-gcc6-warn.patch
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)
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src_prepare() {
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rm -r codegen/cheetah || die
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cat > cmake/modules/FindZLIB.cmake <<- EOF || die
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find_package(PkgConfig)
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pkg_check_modules(ZLIB minizip zlib)
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SET( ZLIB_LIBRARY \${ZLIB_LIBRARIES} )
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SET( ZLIB_INCLUDE_DIR \${ZLIB_INCLUDE_DIRS} )
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MARK_AS_ADVANCED( ZLIB_LIBRARY ZLIB_INCLUDE_DIR )
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EOF
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sed \
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-e "/^\s*unzip\.[ch]/d" \
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-e "/^\s*ioapi\.[ch]/d" \
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-i scribus/CMakeLists.txt Scribus.pro || die
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rm scribus/ioapi.[ch] || die
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sed \
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-e 's:\(${CMAKE_INSTALL_PREFIX}\):./\1:g' \
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-i resources/templates/CMakeLists.txt || die
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edos2unix scribus/ui/propertiespalette_utils.cpp
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cmake-utils_src_prepare
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}
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src_configure() {
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local _lang lang langs
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for lang in ${IUSE_LINGUAS}; do
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_lang=$(translate_lang ${lang})
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if use linguas_${lang} || [[ ${lang} == "en" ]]; then
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# From the CMakeLists.txt
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# "#Bit of a hack, preprocess all the filenames to generate our language string, needed for -DWANT_GUI_LANG=en_GB;de_DE , etc"
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langs+=";${_lang}"
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else
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# Don't install localized documentation
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sed -e "/${_lang}/d" -i doc/CMakeLists.txt || die
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safe_delete \
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./resources/dicts/README_${_lang}.txt \
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./resources/dicts/README_hyph_${_lang}.txt \
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./resources/dicts/hyph_${_lang}.dic \
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./resources/loremipsum/${_lang}.xml
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fi
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sed -e "/en_EN/d" -i doc/CMakeLists.txt || die
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safe_delete \
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./resources/dicts/README_en_EN.txt \
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./resources/dicts/README_hyph_en_EN.txt \
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./resources/dicts/hyph_en_EN.dic \
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./resources/loremipsum/en_EN.xml
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done
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local mycmakeargs=(
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-DHAVE_PYTHON=ON
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-DPYTHON_INCLUDE_PATH="$(python_get_includedir)"
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-DPYTHON_LIBRARY="$(python_get_library_path)"
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-DWANT_DISTROBUILD=ON
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-DDOCDIR="${EPREFIX%/}/usr/share/doc/${PF}/"
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-DWANT_GUI_LANG="${langs#;};en"
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-DWANT_CPP11=ON
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-DWITH_PODOFO="$(usex pdf)"
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-DWITH_BOOST="$(usex boost)"
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-DWANT_GRAPHICSMAGICK="$(usex graphicsmagick)"
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-DWANT_NOOSG="$(usex !osg)"
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-DWANT_DEBUG="$(usex debug)"
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-DWANT_NOHEADERINSTALL="$(usex minimal)"
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-DWANT_HUNSPELL="$(usex hunspell)"
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-DWANT_NOEXAMPLES="$(usex !examples)"
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-DWANT_NOTEMPLATES="$(usex !templates)"
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)
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cmake-utils_src_configure
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}
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src_install() {
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cmake-utils_src_install
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local lang _lang
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# en_EN can be deleted always
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for lang in ${IUSE_LINGUAS}; do
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if ! use linguas_${lang}; then
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_lang=$(translate_lang ${lang})
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safe_delete "${ED%/}"/usr/share/man/${_lang}
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fi
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done
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if ! use scripts; then
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rm "${ED%/}"/usr/share/scribus/scripts/*.py || die
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elif ! use tk; then
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rm "${ED%/}"/usr/share/scribus/scripts/{FontSample,CalendarWizard}.py || die
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fi
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use scripts && \
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python_fix_shebang "${ED%/}"/usr/share/scribus/scripts && \
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python_optimize "${ED%/}"/usr/share/scribus/scripts
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mv "${ED%/}"/usr/share/doc/${PF}/{en,html} || die
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ln -sf html "${ED%/}"/usr/share/doc/${PF}/en || die
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cat >> "${T}"/COPYING <<- EOF || die
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${PN} is licensed under the "${LICENSE}".
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Please visit https://www.gnu.org/licenses/gpl-2.0.html for the complete license text.
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EOF
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dodoc "${T}"/COPYING
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docompress -x /usr/share/doc/${PF}/en /usr/share/doc/${PF}/{AUTHORS,TRANSLATION,LINKS,COPYING}
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local size
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for size in 16 32 128 256; do
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newicon -s $size resources/iconsets/artwork/icon_${size}x${size}.png scribus.png
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done
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newicon -s 64 resources/iconsets/artwork/icon_32x32@2x.png scribus.png
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doicon resources/iconsets/*/scribus.png
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domenu scribus.desktop
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}
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|
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pkg_preinst() {
|
||||
gnome2_icon_savelist
|
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}
|
||||
|
||||
pkg_postinst() {
|
||||
fdo-mime_desktop_database_update
|
||||
fdo-mime_mime_database_update
|
||||
gnome2_icon_cache_update
|
||||
}
|
||||
|
||||
pkg_postrm() {
|
||||
fdo-mime_desktop_database_update
|
||||
fdo-mime_mime_database_update
|
||||
gnome2_icon_cache_update
|
||||
}
|
||||
|
||||
safe_delete () {
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||||
local x
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for x in ${@}; do
|
||||
if [[ -d "${x}" ]]; then
|
||||
ebegin "Deleting ${x} recursively"
|
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rm -r "${x}" || die
|
||||
eend $?
|
||||
elif [[ -f "${x}" ]]; then
|
||||
ebegin "Deleting ${x}"
|
||||
rm "${x}" || die
|
||||
eend $?
|
||||
fi
|
||||
done
|
||||
}
|
||||
|
||||
translate_lang() {
|
||||
_lang=${1}
|
||||
[[ ${1} == "ru_RU" ]] && _lang+=_0
|
||||
[[ ${1} == "de@1901" ]] && _lang=de_1901
|
||||
echo ${_lang}
|
||||
}
|
||||
@ -1 +1 @@
|
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Sat, 25 Feb 2017 18:43:21 +0000
|
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Sat, 25 Feb 2017 20:13:29 +0000
|
||||
|
||||
@ -1 +1 @@
|
||||
Sat, 25 Feb 2017 18:43:21 +0000
|
||||
Sat, 25 Feb 2017 20:13:29 +0000
|
||||
|
||||
@ -1,14 +0,0 @@
|
||||
DEFINED_PHASES=compile configure install prepare test
|
||||
DEPEND=dev-libs/libgcrypt:0= sys-apps/util-linux sys-fs/cryptsetup gnome? ( app-crypt/libsecret ) gui? ( dev-libs/libpwquality dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtwidgets:5 kde? ( kde-frameworks/kwallet:5 ) ) virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.6.3
|
||||
DESCRIPTION=Front end to cryptsetup
|
||||
EAPI=6
|
||||
HOMEPAGE=https://mhogomchungu.github.io/zuluCrypt/
|
||||
IUSE=gnome +gui kde udev
|
||||
KEYWORDS=~amd64 ~x86
|
||||
LICENSE=GPL-2+
|
||||
RDEPEND=dev-libs/libgcrypt:0= sys-apps/util-linux sys-fs/cryptsetup gnome? ( app-crypt/libsecret ) gui? ( dev-libs/libpwquality dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtwidgets:5 kde? ( kde-frameworks/kwallet:5 ) ) udev? ( virtual/udev )
|
||||
REQUIRED_USE=kde? ( gui )
|
||||
SLOT=0
|
||||
SRC_URI=https://github.com/mhogomchungu/zuluCrypt/releases/download/5.0.1/zuluCrypt-5.0.1.tar.bz2
|
||||
_eclasses_=cmake-utils 014267c4475c1a625ecec5b16e0db1e6 eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing eb9be4b678c4e71f3f530a767df31912 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
|
||||
_md5_=1f753f0c5561d60f1f43dafc8ab11d80
|
||||
@ -1,14 +1,14 @@
|
||||
DEFINED_PHASES=compile configure install prepare test
|
||||
DEPEND=dev-libs/libgcrypt:0= sys-apps/util-linux sys-fs/cryptsetup gnome? ( app-crypt/libsecret ) gui? ( dev-libs/libpwquality dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtwidgets:5 kde? ( kde-frameworks/kwallet:5 ) ) virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.6.3
|
||||
DEPEND=dev-libs/libgcrypt:0= sys-apps/util-linux sys-fs/cryptsetup gnome? ( app-crypt/libsecret ) qt5? ( dev-libs/libpwquality dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtwidgets:5 kwallet? ( kde-frameworks/kwallet:5 ) ) virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.6.3
|
||||
DESCRIPTION=Front end to cryptsetup
|
||||
EAPI=6
|
||||
HOMEPAGE=https://mhogomchungu.github.io/zuluCrypt/
|
||||
IUSE=gnome +gui kde udev
|
||||
IUSE=gnome kwallet +qt5 udev
|
||||
KEYWORDS=~amd64 ~x86
|
||||
LICENSE=GPL-2+
|
||||
RDEPEND=dev-libs/libgcrypt:0= sys-apps/util-linux sys-fs/cryptsetup gnome? ( app-crypt/libsecret ) gui? ( dev-libs/libpwquality dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtwidgets:5 kde? ( kde-frameworks/kwallet:5 ) ) udev? ( virtual/udev )
|
||||
REQUIRED_USE=kde? ( gui )
|
||||
RDEPEND=dev-libs/libgcrypt:0= sys-apps/util-linux sys-fs/cryptsetup gnome? ( app-crypt/libsecret ) qt5? ( dev-libs/libpwquality dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtwidgets:5 kwallet? ( kde-frameworks/kwallet:5 ) ) udev? ( virtual/udev )
|
||||
REQUIRED_USE=kwallet? ( qt5 )
|
||||
SLOT=0
|
||||
SRC_URI=https://github.com/mhogomchungu/zuluCrypt/releases/download/5.1.0/zuluCrypt-5.1.0.tar.bz2
|
||||
_eclasses_=cmake-utils 014267c4475c1a625ecec5b16e0db1e6 eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing eb9be4b678c4e71f3f530a767df31912 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
|
||||
_md5_=bf4afb3013908d38cf66e6ccb2595faa
|
||||
_md5_=86c8b4c75aa34d50b54dfd9d6ad22e9f
|
||||
|
||||
@ -0,0 +1,14 @@
|
||||
DEFINED_PHASES=compile configure install postinst postrm preinst prepare setup test
|
||||
DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7[tk?] ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-text/libmspub app-text/poppler:= dev-libs/hyphen dev-libs/librevenge dev-libs/libxml2 dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtopengl:5 dev-qt/qtprintsupport:5 dev-qt/qtquickcontrols:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 media-libs/fontconfig media-libs/freetype:2 media-libs/lcms:2 media-libs/libcdr media-libs/libpagemaker media-libs/libpng:0= media-libs/libvisio media-libs/tiff:0 net-print/cups sys-libs/zlib[minizip] virtual/jpeg:0= >=x11-libs/cairo-1.10.0[X,svg] boost? ( >=dev-libs/boost-1.62:= ) hunspell? ( app-text/hunspell ) graphicsmagick? ( media-gfx/graphicsmagick ) osg? ( dev-games/openscenegraph ) pdf? ( app-text/podofo:0= ) scripts? ( dev-python/pillow[tk?,python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) tk? ( dev-python/pillow[tk?,python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) dev-qt/linguist-tools:5 virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.6.3 app-arch/xz-utils >=sys-apps/sed-4 dev-util/desktop-file-utils x11-misc/shared-mime-info
|
||||
DESCRIPTION=Desktop publishing (DTP) and layout program
|
||||
EAPI=6
|
||||
HOMEPAGE=http://www.scribus.net/
|
||||
IUSE=+boost debug examples graphicsmagick hunspell +minimal osg +pdf scripts templates tk linguas_af linguas_ar linguas_bg linguas_br linguas_ca linguas_ca_ES linguas_cs linguas_cs_CZ linguas_cy linguas_cy_GB linguas_da linguas_da_DK linguas_de linguas_de@1901 linguas_de_CH linguas_de_DE linguas_el linguas_en_AU linguas_en_GB linguas_en_US linguas_eo linguas_es linguas_es_ES linguas_et linguas_eu linguas_fi linguas_fi_FI linguas_fr linguas_gl linguas_he linguas_hr linguas_hu linguas_hu_HU linguas_ia linguas_id linguas_id_ID linguas_is linguas_is_IS linguas_it linguas_ja linguas_ko linguas_ku linguas_la linguas_lt linguas_lt_LT linguas_nb_NO linguas_nl linguas_nn_NO linguas_pl linguas_pl_PL linguas_pt linguas_pt_BR linguas_pt_PT linguas_ro linguas_ro_RO linguas_ru linguas_ru_RU linguas_sa linguas_sk linguas_sk_SK linguas_sl linguas_sl_SI linguas_sq linguas_sr linguas_sv linguas_sv_SE linguas_th_TH linguas_tr linguas_uk linguas_uk_UA linguas_zh_CN linguas_zh_TW python_targets_python2_7
|
||||
KEYWORDS=~amd64 ~x86
|
||||
LICENSE=GPL-2
|
||||
RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7[tk?] ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-text/libmspub app-text/poppler:= dev-libs/hyphen dev-libs/librevenge dev-libs/libxml2 dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtnetwork:5 dev-qt/qtopengl:5 dev-qt/qtprintsupport:5 dev-qt/qtquickcontrols:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 media-libs/fontconfig media-libs/freetype:2 media-libs/lcms:2 media-libs/libcdr media-libs/libpagemaker media-libs/libpng:0= media-libs/libvisio media-libs/tiff:0 net-print/cups sys-libs/zlib[minizip] virtual/jpeg:0= >=x11-libs/cairo-1.10.0[X,svg] boost? ( >=dev-libs/boost-1.62:= ) hunspell? ( app-text/hunspell ) graphicsmagick? ( media-gfx/graphicsmagick ) osg? ( dev-games/openscenegraph ) pdf? ( app-text/podofo:0= ) scripts? ( dev-python/pillow[tk?,python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) tk? ( dev-python/pillow[tk?,python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) app-text/ghostscript-gpl
|
||||
REQUIRED_USE=python_targets_python2_7 tk? ( scripts )
|
||||
SLOT=0
|
||||
SRC_URI=mirror://sourceforge/project/scribus/scribus-devel/1.5.2/scribus-1.5.2.tar.xz
|
||||
_eclasses_=cmake-utils 014267c4475c1a625ecec5b16e0db1e6 eutils 708f85bc1bf00876604e223fb56e062a fdo-mime 92d07846ea8ea54172f8c0112a47ae3d flag-o-matic 35067884fbff37bc0c8e7421c5315558 gnome.org ad34f378a3d57a6f2f2b8b4aaca4543e gnome2 c4ea6f9f250b5355e9e948e7007dead0 gnome2-utils c6dcdf3a2c22b578b16adb945dc85c35 libtool 84763589a795fb127b537cac01e5359f multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing eb9be4b678c4e71f3f530a767df31912 python-single-r1 6793fc854691a2320226801400573568 python-utils-r1 50dad5f912d4c16c130f5679777f25e8 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c xdg a5c4c5ce4f5ce9a2e777f5d9a40a8723 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
|
||||
_md5_=ff2cb84b9699d7d32366b6a03eaea4ed
|
||||
@ -1,14 +1,14 @@
|
||||
DEFINED_PHASES=compile config configure install postinst postrm preinst prepare setup test unpack
|
||||
DEPEND=>=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib app-arch/bzip2 berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) kde? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) http? ( >=net-libs/serf-1.2.1 ) !!<sys-apps/sandbox-1.6 ctypes-python? ( dev-python/ctypesgen ) doc? ( app-doc/doxygen ) gnome-keyring? ( virtual/pkgconfig ) http? ( virtual/pkgconfig ) java? ( >=virtual/jdk-1.5 ) kde? ( virtual/pkgconfig ) nls? ( sys-devel/gettext ) test? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) apache2? ( =www-servers/apache-2* ) !<sys-devel/gettext-0.18.1.1-r3 sys-devel/automake >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
DEPEND=app-arch/bzip2 >=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) http? ( >=net-libs/serf-1.2.1 ) kwallet? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) !!<sys-apps/sandbox-1.6 ctypes-python? ( dev-python/ctypesgen ) doc? ( app-doc/doxygen ) gnome-keyring? ( virtual/pkgconfig ) http? ( virtual/pkgconfig ) java? ( >=virtual/jdk-1.5 ) kwallet? ( virtual/pkgconfig ) nls? ( sys-devel/gettext ) test? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) apache2? ( =www-servers/apache-2* ) !<sys-devel/gettext-0.18.1.1-r3 sys-devel/automake >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
DESCRIPTION=Advanced version control system
|
||||
EAPI=5
|
||||
HOMEPAGE=http://subversion.apache.org/
|
||||
IUSE=apache2 berkdb ctypes-python debug doc +dso extras gnome-keyring +http java kde nls perl python ruby sasl test vim-syntax apache2 python_targets_python2_7 elibc_FreeBSD java
|
||||
IUSE=apache2 berkdb ctypes-python debug doc +dso extras gnome-keyring +http java kwallet nls perl python ruby sasl test vim-syntax apache2 python_targets_python2_7 elibc_FreeBSD java
|
||||
KEYWORDS=alpha amd64 arm ~arm64 hppa ia64 ~mips ppc ppc64 ~s390 ~sh sparc x86 ~ppc-aix ~amd64-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris
|
||||
LICENSE=Subversion GPL-2
|
||||
RDEPEND=>=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib app-arch/bzip2 berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) kde? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) http? ( >=net-libs/serf-1.2.1 ) apache2? ( www-servers/apache[apache2_modules_dav] ) java? ( >=virtual/jre-1.5 ) kde? ( kde-apps/kwalletd:4 ) nls? ( virtual/libintl ) perl? ( dev-perl/URI ) apache2? ( =www-servers/apache-2* ) java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
RDEPEND=app-arch/bzip2 >=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) http? ( >=net-libs/serf-1.2.1 ) kwallet? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) apache2? ( www-servers/apache[apache2_modules_dav] ) java? ( >=virtual/jre-1.5 ) kwallet? ( kde-apps/kwalletd:4 ) nls? ( virtual/libintl ) perl? ( dev-perl/URI ) apache2? ( =www-servers/apache-2* ) java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
REQUIRED_USE=ctypes-python? ( || ( python_targets_python2_7 ) ) python? ( || ( python_targets_python2_7 ) ) test? ( || ( python_targets_python2_7 ) !dso )
|
||||
SLOT=0
|
||||
SRC_URI=mirror://apache/subversion/subversion-1.8.17.tar.bz2
|
||||
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c bash-completion-r1 acf715fa09463f043fbfdc1640f3fb85 db-use a4966c7f4f7df444ead1212848c13cc9 depend.apache 7aeacf4ba074b9aa0047e2ba05c1010f distutils-r1 ff7a6238714c20c6b0ba05d9956b5ad8 elisp-common 9f56c4e9bf1282dbfc2a5a09e1124e74 eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 java-pkg-opt-2 40db73f27fc6458ec2105812a4f261c7 java-utils-2 b31a7fe19a47c6a2d901f6de949e5209 libtool 84763589a795fb127b537cac01e5359f multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing eb9be4b678c4e71f3f530a767df31912 perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 1f16d4a5e3af0ebb79bbe131576e0618 python-utils-r1 50dad5f912d4c16c130f5679777f25e8 ruby-single a5e86595177a8998cbb9f794f2bf9700 ruby-utils 382c3a262907e1219a21618dfd1a01a0 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be versionator 99ae9d758cbe7cfed19170e7d48f5a9c xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
|
||||
_md5_=4afb1d6c70a0e31b0a8e9c832716abc8
|
||||
_md5_=26b23f3499c48a9366ce63f80d8ab86f
|
||||
|
||||
@ -1,14 +1,14 @@
|
||||
DEFINED_PHASES=compile config configure install postinst postrm preinst prepare setup test unpack
|
||||
DEPEND=>=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib app-arch/bzip2 berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) kde? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 dev-lang/ruby:2.3 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) http? ( >=net-libs/serf-1.3.4 ) !!<sys-apps/sandbox-1.6 ctypes-python? ( dev-python/ctypesgen ) doc? ( app-doc/doxygen ) gnome-keyring? ( virtual/pkgconfig ) http? ( virtual/pkgconfig ) java? ( >=virtual/jdk-1.5 ) kde? ( virtual/pkgconfig ) nls? ( sys-devel/gettext ) test? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) apache2? ( =www-servers/apache-2* ) !<sys-devel/gettext-0.18.1.1-r3 sys-devel/automake >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
DEPEND=app-arch/bzip2 >=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) http? ( >=net-libs/serf-1.3.4 ) kwallet? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 dev-lang/ruby:2.3 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) !!<sys-apps/sandbox-1.6 ctypes-python? ( dev-python/ctypesgen ) doc? ( app-doc/doxygen ) gnome-keyring? ( virtual/pkgconfig ) http? ( virtual/pkgconfig ) java? ( >=virtual/jdk-1.5 ) kwallet? ( virtual/pkgconfig ) nls? ( sys-devel/gettext ) test? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) apache2? ( =www-servers/apache-2* ) !<sys-devel/gettext-0.18.1.1-r3 sys-devel/automake >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
DESCRIPTION=Advanced version control system
|
||||
EAPI=5
|
||||
HOMEPAGE=http://subversion.apache.org/
|
||||
IUSE=apache2 berkdb ctypes-python debug doc +dso extras gnome-keyring +http java kde nls perl python ruby sasl test vim-syntax apache2 python_targets_python2_7 elibc_FreeBSD java
|
||||
IUSE=apache2 berkdb ctypes-python debug doc +dso extras gnome-keyring +http java kwallet nls perl python ruby sasl test vim-syntax apache2 python_targets_python2_7 elibc_FreeBSD java
|
||||
KEYWORDS=alpha amd64 arm ~arm64 hppa ia64 ~mips ppc ppc64 ~s390 ~sh sparc x86 ~ppc-aix ~amd64-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris
|
||||
LICENSE=Subversion GPL-2
|
||||
RDEPEND=>=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib app-arch/bzip2 berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) kde? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 dev-lang/ruby:2.3 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) http? ( >=net-libs/serf-1.3.4 ) apache2? ( www-servers/apache[apache2_modules_dav] ) java? ( >=virtual/jre-1.5 ) kde? ( kde-apps/kwalletd:4 ) nls? ( virtual/libintl ) perl? ( dev-perl/URI ) apache2? ( =www-servers/apache-2* ) java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
RDEPEND=app-arch/bzip2 >=dev-db/sqlite-3.7.12 >=dev-libs/apr-1.3:1 >=dev-libs/apr-util-1.3:1 dev-libs/expat sys-apps/file sys-libs/zlib berkdb? ( >=sys-libs/db-4.0.14:= ) ctypes-python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) gnome-keyring? ( dev-libs/glib:2 sys-apps/dbus gnome-base/libgnome-keyring ) http? ( >=net-libs/serf-1.3.4 ) kwallet? ( sys-apps/dbus dev-qt/qtcore:4 dev-qt/qtdbus:4 dev-qt/qtgui:4 kde-frameworks/kdelibs:4 ) perl? ( dev-lang/perl:= ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ruby? ( || ( dev-lang/ruby:2.1 dev-lang/ruby:2.2 dev-lang/ruby:2.3 ) virtual/rubygems ) sasl? ( dev-libs/cyrus-sasl ) apache2? ( www-servers/apache[apache2_modules_dav] ) java? ( >=virtual/jre-1.5 ) kwallet? ( kde-apps/kwalletd:4 ) nls? ( virtual/libintl ) perl? ( dev-perl/URI ) apache2? ( =www-servers/apache-2* ) java? ( >=dev-java/java-config-2.2.0-r3 )
|
||||
REQUIRED_USE=ctypes-python? ( || ( python_targets_python2_7 ) ) python? ( || ( python_targets_python2_7 ) ) test? ( || ( python_targets_python2_7 ) !dso )
|
||||
SLOT=0
|
||||
SRC_URI=mirror://apache/subversion/subversion-1.9.5.tar.bz2
|
||||
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c bash-completion-r1 acf715fa09463f043fbfdc1640f3fb85 db-use a4966c7f4f7df444ead1212848c13cc9 depend.apache 7aeacf4ba074b9aa0047e2ba05c1010f distutils-r1 ff7a6238714c20c6b0ba05d9956b5ad8 elisp-common 9f56c4e9bf1282dbfc2a5a09e1124e74 eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 java-pkg-opt-2 40db73f27fc6458ec2105812a4f261c7 java-utils-2 b31a7fe19a47c6a2d901f6de949e5209 libtool 84763589a795fb127b537cac01e5359f multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing eb9be4b678c4e71f3f530a767df31912 perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 1f16d4a5e3af0ebb79bbe131576e0618 python-utils-r1 50dad5f912d4c16c130f5679777f25e8 ruby-single a5e86595177a8998cbb9f794f2bf9700 ruby-utils 382c3a262907e1219a21618dfd1a01a0 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be versionator 99ae9d758cbe7cfed19170e7d48f5a9c xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
|
||||
_md5_=be9b33f84bd04ba8ae5e68d15269b268
|
||||
_md5_=49c075d7496efa74706b67a4746396c3
|
||||
|
||||
@ -0,0 +1,9 @@
|
||||
DEFINED_PHASES=-
|
||||
DESCRIPTION=The Nagios metapackage
|
||||
EAPI=6
|
||||
HOMEPAGE=http://www.nagios.org/
|
||||
KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~sparc ~x86
|
||||
LICENSE=GPL-2
|
||||
RDEPEND=~net-analyzer/nagios-core-4.3.1 || ( net-analyzer/nagios-plugins net-analyzer/monitoring-plugins )
|
||||
SLOT=0
|
||||
_md5_=7d4e669da3f11f0cf5e6727821018d88
|
||||
@ -0,0 +1,14 @@
|
||||
DEFINED_PHASES=compile configure install postinst setup
|
||||
DEPEND=sys-devel/libtool virtual/mailx perl? ( dev-lang/perl:= ) web? ( app-arch/unzip media-libs/gd[jpeg,png] lighttpd? ( www-servers/lighttpd[php] ) apache2? ( || ( >=www-servers/apache-2.4[apache2_modules_alias,apache2_modules_cgi] >=www-servers/apache-2.4[apache2_modules_alias,apache2_modules_cgid] >=www-servers/apache-2.4[apache2_modules_alias,apache2_modules_fcgid] ) || ( dev-lang/php:*[apache2] dev-lang/php:*[cgi] dev-lang/php:*[fpm] ) ) )
|
||||
DESCRIPTION=Nagios core - monitoring daemon, web GUI, and documentation
|
||||
EAPI=6
|
||||
HOMEPAGE=http://www.nagios.org/
|
||||
IUSE=apache2 classicui lighttpd perl +web vim-syntax
|
||||
KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~sparc ~x86
|
||||
LICENSE=GPL-2
|
||||
RDEPEND=sys-devel/libtool virtual/mailx perl? ( dev-lang/perl:= ) web? ( app-arch/unzip media-libs/gd[jpeg,png] lighttpd? ( www-servers/lighttpd[php] ) apache2? ( || ( >=www-servers/apache-2.4[apache2_modules_alias,apache2_modules_cgi] >=www-servers/apache-2.4[apache2_modules_alias,apache2_modules_cgid] >=www-servers/apache-2.4[apache2_modules_alias,apache2_modules_fcgid] ) || ( dev-lang/php:*[apache2] dev-lang/php:*[cgi] dev-lang/php:*[fpm] ) ) ) vim-syntax? ( app-vim/nagios-syntax )
|
||||
REQUIRED_USE=apache2? ( !lighttpd )
|
||||
SLOT=0
|
||||
SRC_URI=mirror://sourceforge/nagios/nagios-4.3.1.tar.gz web? ( https://dev.gentoo.org/~mjo/distfiles/nagios-core-gentoo-icons-20141125.tar )
|
||||
_eclasses_=multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 user e10ccb95af96d45f86016fa982a949bb
|
||||
_md5_=e631c2dbe2ada57dbee0848454939e68
|
||||
@ -1,12 +1,12 @@
|
||||
DEFINED_PHASES=compile install
|
||||
DEPEND=emboss? ( sci-biology/emboss )
|
||||
DESCRIPTION=Amino acid indices and similarity matrices
|
||||
EAPI=0
|
||||
HOMEPAGE=http://www.genome.ad.jp/aaindex
|
||||
EAPI=6
|
||||
HOMEPAGE=http://www.genome.jp/aaindex/
|
||||
IUSE=emboss minimal
|
||||
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
|
||||
LICENSE=public-domain
|
||||
RDEPEND=emboss? ( sci-biology/emboss )
|
||||
SLOT=0
|
||||
SRC_URI=mirror://gentoo/aaindex-9.1.tar.bz2
|
||||
_md5_=22faad20c144b0538946b11027aadf7b
|
||||
_md5_=4d6b4148026d75cbe012cfa4d4375818
|
||||
@ -1,13 +0,0 @@
|
||||
DEFINED_PHASES=prepare
|
||||
DEPEND=qt4? ( dev-qt/qtcore:4 )
|
||||
DESCRIPTION=A Modular, Open-Source whole genome assembler
|
||||
EAPI=4
|
||||
HOMEPAGE=http://amos.sourceforge.net/
|
||||
IUSE=qt4
|
||||
KEYWORDS=amd64 x86
|
||||
LICENSE=Artistic
|
||||
RDEPEND=qt4? ( dev-qt/qtcore:4 ) dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer
|
||||
SLOT=0
|
||||
SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz
|
||||
_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=57af6bf2b801ff256544c1ae4d6e2239
|
||||
@ -1,13 +0,0 @@
|
||||
DEFINED_PHASES=compile configure install
|
||||
DEPEND=qt4? ( dev-qt/qtcore:4 )
|
||||
DESCRIPTION=A Modular, Open-Source whole genome assembler
|
||||
EAPI=6
|
||||
HOMEPAGE=http://amos.sourceforge.net/
|
||||
IUSE=qt4 python_targets_python2_7
|
||||
KEYWORDS=~amd64 ~x86
|
||||
LICENSE=Artistic
|
||||
RDEPEND=qt4? ( dev-qt/qtcore:4 ) dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer
|
||||
SLOT=0
|
||||
SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
|
||||
_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 1f16d4a5e3af0ebb79bbe131576e0618 python-utils-r1 50dad5f912d4c16c130f5679777f25e8 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=7c03cf026ee8384c15d8a787be2d0c41
|
||||
@ -0,0 +1,14 @@
|
||||
DEFINED_PHASES=install prepare setup
|
||||
DEPEND=qt4? ( dev-qt/qtcore:4 ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
|
||||
DESCRIPTION=A Modular, Open-Source whole genome assembler
|
||||
EAPI=6
|
||||
HOMEPAGE=http://amos.sourceforge.net/
|
||||
IUSE=qt4 python_targets_python2_7
|
||||
KEYWORDS=~amd64 ~x86
|
||||
LICENSE=Artistic
|
||||
RDEPEND=qt4? ( dev-qt/qtcore:4 ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer
|
||||
REQUIRED_USE=python_targets_python2_7
|
||||
SLOT=0
|
||||
SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
|
||||
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 libtool 84763589a795fb127b537cac01e5359f multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 6793fc854691a2320226801400573568 python-utils-r1 50dad5f912d4c16c130f5679777f25e8 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=06ee98ea19966829e6af9c383fba91f2
|
||||
@ -1,11 +0,0 @@
|
||||
DEFINED_PHASES=compile install prepare setup
|
||||
DESCRIPTION=Clustering Database at High Identity with Tolerance
|
||||
EAPI=3
|
||||
HOMEPAGE=http://weizhong-lab.ucsd.edu/cd-hit/
|
||||
IUSE=openmp
|
||||
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
|
||||
LICENSE=GPL-2
|
||||
SLOT=0
|
||||
SRC_URI=https://cdhit.googlecode.com/files/cd-hit-v4.5.1-2011-01-31.tgz
|
||||
_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=2219ae002375618957700246d19245ee
|
||||
@ -1,11 +0,0 @@
|
||||
DEFINED_PHASES=compile install prepare setup
|
||||
DESCRIPTION=Clustering Database at High Identity with Tolerance
|
||||
EAPI=4
|
||||
HOMEPAGE=http://weizhong-lab.ucsd.edu/cd-hit/
|
||||
IUSE=doc openmp
|
||||
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
|
||||
LICENSE=GPL-2
|
||||
SLOT=0
|
||||
SRC_URI=https://cdhit.googlecode.com/files/cd-hit-v4.6-2012-04-25.tgz
|
||||
_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=8a2e925af92a3450f7d695bc78112d38
|
||||
@ -1,11 +1,12 @@
|
||||
DEFINED_PHASES=compile install prepare setup
|
||||
DEFINED_PHASES=compile install pretend setup
|
||||
DESCRIPTION=Clustering Database at High Identity with Tolerance
|
||||
EAPI=4
|
||||
EAPI=6
|
||||
HOMEPAGE=http://weizhong-lab.ucsd.edu/cd-hit/
|
||||
IUSE=openmp
|
||||
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
|
||||
LICENSE=GPL-2
|
||||
RDEPEND=dev-lang/perl
|
||||
SLOT=0
|
||||
SRC_URI=https://cdhit.googlecode.com/files/cd-hit-v4.5.4-2011-03-07.tgz
|
||||
SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz
|
||||
_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=2341c46a3e214cc187e24ee6e9619a28
|
||||
_md5_=6f2527a7e8185053ec2d19cad4038ed5
|
||||
@ -1,13 +1,13 @@
|
||||
DEFINED_PHASES=configure install prepare unpack
|
||||
DEPEND=>=dev-qt/qtconcurrent-5.6:5 >=dev-qt/qtcore-5.6:5 >=dev-qt/qtdeclarative-5.6:5[widgets] >=dev-qt/qtgui-5.6:5 >=dev-qt/qtnetwork-5.6:5[ssl] >=dev-qt/qtprintsupport-5.6:5 >=dev-qt/qtsql-5.6:5[sqlite] >=dev-qt/qtwebchannel-5.6:5 >=dev-qt/qtwebengine-5.6:5[widgets] >=dev-qt/qtwidgets-5.6:5 >=dev-qt/qtx11extras-5.6:5 x11-libs/libxcb:= dbus? ( >=dev-qt/qtdbus-5.6:5 ) gnome-keyring? ( gnome-base/gnome-keyring ) kde? ( kde-frameworks/kwallet:5 ) libressl? ( dev-libs/libressl:= ) !libressl? ( dev-libs/openssl:0 ) >=dev-qt/linguist-tools-5.6:5 virtual/pkgconfig
|
||||
DEPEND=>=dev-qt/qtconcurrent-5.6:5 >=dev-qt/qtcore-5.6:5 >=dev-qt/qtdeclarative-5.6:5[widgets] >=dev-qt/qtgui-5.6:5 >=dev-qt/qtnetwork-5.6:5[ssl] >=dev-qt/qtprintsupport-5.6:5 >=dev-qt/qtsql-5.6:5[sqlite] >=dev-qt/qtwebchannel-5.6:5 >=dev-qt/qtwebengine-5.6:5[widgets] >=dev-qt/qtwidgets-5.6:5 >=dev-qt/qtx11extras-5.6:5 x11-libs/libxcb:= dbus? ( >=dev-qt/qtdbus-5.6:5 ) gnome-keyring? ( gnome-base/gnome-keyring ) kwallet? ( kde-frameworks/kwallet:5 ) libressl? ( dev-libs/libressl:= ) !libressl? ( dev-libs/openssl:0 ) >=dev-qt/linguist-tools-5.6:5 virtual/pkgconfig
|
||||
DESCRIPTION=A cross-platform web browser using QtWebEngine
|
||||
EAPI=6
|
||||
HOMEPAGE=http://www.qupzilla.com/
|
||||
IUSE=dbus debug gnome-keyring kde libressl nonblockdialogs
|
||||
IUSE=dbus debug gnome-keyring kwallet libressl nonblockdialogs
|
||||
KEYWORDS=amd64 x86
|
||||
LICENSE=GPL-3
|
||||
RDEPEND=>=dev-qt/qtconcurrent-5.6:5 >=dev-qt/qtcore-5.6:5 >=dev-qt/qtdeclarative-5.6:5[widgets] >=dev-qt/qtgui-5.6:5 >=dev-qt/qtnetwork-5.6:5[ssl] >=dev-qt/qtprintsupport-5.6:5 >=dev-qt/qtsql-5.6:5[sqlite] >=dev-qt/qtwebchannel-5.6:5 >=dev-qt/qtwebengine-5.6:5[widgets] >=dev-qt/qtwidgets-5.6:5 >=dev-qt/qtx11extras-5.6:5 x11-libs/libxcb:= dbus? ( >=dev-qt/qtdbus-5.6:5 ) gnome-keyring? ( gnome-base/gnome-keyring ) kde? ( kde-frameworks/kwallet:5 ) libressl? ( dev-libs/libressl:= ) !libressl? ( dev-libs/openssl:0 )
|
||||
RDEPEND=>=dev-qt/qtconcurrent-5.6:5 >=dev-qt/qtcore-5.6:5 >=dev-qt/qtdeclarative-5.6:5[widgets] >=dev-qt/qtgui-5.6:5 >=dev-qt/qtnetwork-5.6:5[ssl] >=dev-qt/qtprintsupport-5.6:5 >=dev-qt/qtsql-5.6:5[sqlite] >=dev-qt/qtwebchannel-5.6:5 >=dev-qt/qtwebengine-5.6:5[widgets] >=dev-qt/qtwidgets-5.6:5 >=dev-qt/qtx11extras-5.6:5 x11-libs/libxcb:= dbus? ( >=dev-qt/qtdbus-5.6:5 ) gnome-keyring? ( gnome-base/gnome-keyring ) kwallet? ( kde-frameworks/kwallet:5 ) libressl? ( dev-libs/libressl:= ) !libressl? ( dev-libs/openssl:0 )
|
||||
SLOT=0
|
||||
SRC_URI=https://github.com/QupZilla/qupzilla/releases/download/v2.0.2/QupZilla-2.0.2.tar.xz https://github.com/QupZilla/qupzilla-plugins/archive/c332d306c0f6cf645c75eaf198d2fc5e12339e9e.tar.gz -> qupzilla-plugins-2016.05.02.tar.gz
|
||||
_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a multilib 165fc17c38d1b11dac2008280dab6e80 qmake-utils 0a242e7177789b0028b4045f336dd4db toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=4aec4da43f556080cb3d9bf317495b93
|
||||
_md5_=e03460b69f6f7586872b768c31c53fec
|
||||
|
||||
@ -0,0 +1,13 @@
|
||||
DEFINED_PHASES=configure install prepare unpack
|
||||
DEPEND=>=dev-qt/qtcore-5.7.1:5 >=dev-qt/qtdeclarative-5.7.1:5[widgets] >=dev-qt/qtgui-5.7.1:5 >=dev-qt/qtnetwork-5.7.1:5[ssl] >=dev-qt/qtprintsupport-5.7.1:5 >=dev-qt/qtsql-5.7.1:5[sqlite] >=dev-qt/qtwebchannel-5.7.1:5 >=dev-qt/qtwebengine-5.7.1:5[widgets] >=dev-qt/qtwidgets-5.7.1:5 >=dev-qt/qtx11extras-5.7.1:5 x11-libs/libxcb:= dbus? ( >=dev-qt/qtdbus-5.7.1:5 ) gnome-keyring? ( gnome-base/gnome-keyring ) kwallet? ( kde-frameworks/kwallet:5 ) libressl? ( dev-libs/libressl:= ) !libressl? ( dev-libs/openssl:0= ) >=dev-qt/linguist-tools-5.7.1:5 >=dev-qt/qtconcurrent-5.7.1:5 virtual/pkgconfig
|
||||
DESCRIPTION=A cross-platform web browser using QtWebEngine
|
||||
EAPI=6
|
||||
HOMEPAGE=https://www.qupzilla.com/
|
||||
IUSE=dbus debug gnome-keyring kwallet libressl nonblockdialogs linguas_ar_SA linguas_bg_BG linguas_ca_ES linguas_cs_CZ linguas_da_DK linguas_de_DE linguas_el_GR linguas_es_ES linguas_es_MX linguas_es_VE linguas_eu_ES linguas_fa_IR linguas_fi_FI linguas_fr_FR linguas_gl_ES linguas_he_IL linguas_hr_HR linguas_hu_HU linguas_id_ID linguas_is linguas_it_IT linguas_ja_JP linguas_ka_GE linguas_lg linguas_lt linguas_lv_LV linguas_nl_NL linguas_nqo linguas_pl_PL linguas_pt_BR linguas_pt_PT linguas_ro_RO linguas_ru_RU linguas_sk_SK linguas_sr linguas_sr@ijekavian linguas_sr@ijekavianlatin linguas_sr@latin linguas_sv_SE linguas_tr_TR linguas_uk_UA linguas_uz@Latn linguas_zh_CN linguas_zh_HK linguas_zh_TW
|
||||
KEYWORDS=~amd64 ~x86
|
||||
LICENSE=GPL-3
|
||||
RDEPEND=>=dev-qt/qtcore-5.7.1:5 >=dev-qt/qtdeclarative-5.7.1:5[widgets] >=dev-qt/qtgui-5.7.1:5 >=dev-qt/qtnetwork-5.7.1:5[ssl] >=dev-qt/qtprintsupport-5.7.1:5 >=dev-qt/qtsql-5.7.1:5[sqlite] >=dev-qt/qtwebchannel-5.7.1:5 >=dev-qt/qtwebengine-5.7.1:5[widgets] >=dev-qt/qtwidgets-5.7.1:5 >=dev-qt/qtx11extras-5.7.1:5 x11-libs/libxcb:= dbus? ( >=dev-qt/qtdbus-5.7.1:5 ) gnome-keyring? ( gnome-base/gnome-keyring ) kwallet? ( kde-frameworks/kwallet:5 ) libressl? ( dev-libs/libressl:= ) !libressl? ( dev-libs/openssl:0= )
|
||||
SLOT=0
|
||||
SRC_URI=https://github.com/QupZilla/qupzilla/releases/download/v2.1.1/QupZilla-2.1.1.tar.xz https://github.com/QupZilla/qupzilla-plugins/archive/c332d306c0f6cf645c75eaf198d2fc5e12339e9e.tar.gz -> qupzilla-plugins-2016.05.02.tar.gz
|
||||
_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a l10n e26ea0642846685782f1813642e7ff0f multilib 165fc17c38d1b11dac2008280dab6e80 qmake-utils 0a242e7177789b0028b4045f336dd4db toolchain-funcs 1b1da0c45c555989dc5d832b54880783
|
||||
_md5_=d99525d262dcdeb5b0a7e45854cea2b5
|
||||
@ -1 +1 @@
|
||||
Sat, 25 Feb 2017 18:43:21 +0000
|
||||
Sat, 25 Feb 2017 20:13:29 +0000
|
||||
|
||||
@ -1 +1 @@
|
||||
Sat Feb 25 18:39:29 UTC 2017
|
||||
Sat Feb 25 20:09:39 UTC 2017
|
||||
|
||||
@ -1 +1 @@
|
||||
Sat, 25 Feb 2017 19:00:01 +0000
|
||||
Sat, 25 Feb 2017 20:30:01 +0000
|
||||
|
||||
@ -1 +1 @@
|
||||
1488048001 Sat 25 Feb 2017 06:40:01 PM UTC
|
||||
1488053401 Sat 25 Feb 2017 08:10:01 PM UTC
|
||||
|
||||
@ -1 +1 @@
|
||||
Sat, 25 Feb 2017 18:43:21 +0000
|
||||
Sat, 25 Feb 2017 20:13:29 +0000
|
||||
|
||||
@ -1,3 +1,4 @@
|
||||
DIST nagios-3.5.1.tar.gz 1763584 SHA256 ca9dd68234fa090b3c35ecc8767b2c9eb743977eaf32612fa9b8341cc00a0f99 SHA512 48e2ecb91002b08203937b12a438c87c62cd3c5c401a0ed9e861cd6d79074c7017ed373e9379f013d87dea1fd7cb8e3d85112d55c87ac91aed96b256868c112d WHIRLPOOL 2c02584702c64dbb0e353e34b758fab079eee0dc7a401e7b5947a21733758d3596401e5519e2dd7f05c89ee4835c21965d2718157fd9d6d3d20af9c853d688ca
|
||||
DIST nagios-4.2.4.tar.gz 11088206 SHA256 b0055c475683ce50d77b1536ff0cec9abf89139adecf771601fa021ef9a20b70 SHA512 1f060f3139db6f77f7ca218bb4befb631c08b0ccb1b2b85e4c06cfc94328b5d09cef9b547eb54617089334a1e36b881347dfbb98bcc88b9b38e878214f97883a WHIRLPOOL a3d5454c72ab38388e8071dca8a319c717bb22915cfd06243727eb33f7b8a93cc323531be1535d14e283335b9964762a2729f4605f76d9a01ff78bbe924053a7
|
||||
DIST nagios-4.3.1.tar.gz 11095797 SHA256 dfc2f5f146eb508b2a28d28af7c338ef9eb604327efdc50142642026f7e79f82 SHA512 d5f1919e2b32b0b2f4c5766367f0992fcf9b1f6766f4d3386e15e318cc1f57cdae6bc07f09464fd8212bef1713948fcb25d233eab588438036f996b6c479c97e WHIRLPOOL 72032e93802fd28db71bb5a10bba703a9508c587de69ff24ce302ad4fbbd93996b4800ceb7dd4f5648e2717377409cd7a66591f177e775da1c69444d528be1a2
|
||||
DIST nagios-core-gentoo-icons-20141125.tar 40960 SHA256 68b715f636eb291343cab3259862bbed8b6b898520b58df522438524de3d8761 SHA512 bf109879cddd6136b76baba55d0b60b2596e37431dcf5ce0905d34a9fa292ebf7e4bde82d9a084362c486e8fac344c76d88f9298b1b85541ed70ffd608493766 WHIRLPOOL 7ec3a944b2a659b456d3168818ca5b1af3a427436e6af2f3e5d6cba6fc7b1c7bad6f552301f064df31988865b3b32fd117d9e6f61c630d6d817a51cbbbcb331d
|
||||
|
||||
@ -0,0 +1,248 @@
|
||||
# Copyright 1999-2017 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=6
|
||||
|
||||
inherit toolchain-funcs user
|
||||
|
||||
MY_P=${PN/-core}-${PV}
|
||||
DESCRIPTION="Nagios core - monitoring daemon, web GUI, and documentation"
|
||||
HOMEPAGE="http://www.nagios.org/"
|
||||
|
||||
# The name of the directory into which our Gentoo icons will be
|
||||
# extracted, and also the basename of the archive containing it.
|
||||
GENTOO_ICONS="${PN}-gentoo-icons-20141125"
|
||||
SRC_URI="mirror://sourceforge/nagios/${MY_P}.tar.gz
|
||||
web? ( https://dev.gentoo.org/~mjo/distfiles/${GENTOO_ICONS}.tar )"
|
||||
|
||||
LICENSE="GPL-2"
|
||||
SLOT="0"
|
||||
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~sparc ~x86"
|
||||
IUSE="apache2 classicui lighttpd perl +web vim-syntax"
|
||||
|
||||
# In pkg_postinst(), we change the group of the Nagios configuration
|
||||
# directory to that of the web server user. It can't belong to both
|
||||
# apache/lighttpd groups at the same time, so we block this combination
|
||||
# for our own sanity.
|
||||
#
|
||||
# This could be made to work, but we would need a better way to allow
|
||||
# the web user read-only access to Nagios's configuration directory.
|
||||
#
|
||||
REQUIRED_USE="apache2? ( !lighttpd )"
|
||||
|
||||
# sys-devel/libtool dependency is bug #401237.
|
||||
#
|
||||
# Note, we require one of the apache2 CGI modules:
|
||||
#
|
||||
# * mod_cgi
|
||||
# * mod_cgid
|
||||
# * mod_fcgid
|
||||
#
|
||||
# We just don't care /which/ one. And of course PHP supports both CGI
|
||||
# (USE=cgi) and FastCGI (USE=fpm). We're pretty lenient with the
|
||||
# dependencies, and expect the user not to do anything /too/
|
||||
# stupid. (For example, installing Apache with only FastCGI support, and
|
||||
# PHP with only CGI support.)
|
||||
#
|
||||
# Another annoyance is that the upstream Makefile uses app-arch/unzip to
|
||||
# extract a snapshot of AngularJS, but that's only needed when USE=web.
|
||||
#
|
||||
MOD_ALIAS=apache2_modules_alias
|
||||
DEPEND="sys-devel/libtool
|
||||
virtual/mailx
|
||||
perl? ( dev-lang/perl:= )
|
||||
web? (
|
||||
app-arch/unzip
|
||||
media-libs/gd[jpeg,png]
|
||||
lighttpd? ( www-servers/lighttpd[php] )
|
||||
apache2? (
|
||||
|| (
|
||||
>=www-servers/apache-2.4[${MOD_ALIAS},apache2_modules_cgi]
|
||||
>=www-servers/apache-2.4[${MOD_ALIAS},apache2_modules_cgid]
|
||||
>=www-servers/apache-2.4[${MOD_ALIAS},apache2_modules_fcgid] )
|
||||
|| (
|
||||
dev-lang/php:*[apache2]
|
||||
dev-lang/php:*[cgi]
|
||||
dev-lang/php:*[fpm] )
|
||||
)
|
||||
)"
|
||||
RDEPEND="${DEPEND}
|
||||
vim-syntax? ( app-vim/nagios-syntax )"
|
||||
|
||||
S="${WORKDIR}/${MY_P}"
|
||||
|
||||
pkg_setup() {
|
||||
enewgroup nagios
|
||||
enewuser nagios -1 /bin/bash /var/nagios/home nagios
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
local myconf
|
||||
|
||||
if use perl; then
|
||||
myconf="${myconf} --enable-embedded-perl --with-perlcache"
|
||||
fi
|
||||
|
||||
if use !apache2 && use !lighttpd ; then
|
||||
myconf="${myconf} --with-command-group=nagios"
|
||||
else
|
||||
if use apache2 ; then
|
||||
myconf="${myconf} --with-command-group=apache"
|
||||
myconf="${myconf} --with-httpd-conf=/etc/apache2/conf.d"
|
||||
elif use lighttpd ; then
|
||||
myconf="${myconf} --with-command-group=lighttpd"
|
||||
fi
|
||||
fi
|
||||
|
||||
econf ${myconf} \
|
||||
--prefix=/usr \
|
||||
--bindir=/usr/sbin \
|
||||
--sbindir=/usr/$(get_libdir)/nagios/cgi-bin \
|
||||
--datadir=/usr/share/nagios/htdocs \
|
||||
--localstatedir=/var/nagios \
|
||||
--sysconfdir=/etc/nagios \
|
||||
--libexecdir=/usr/$(get_libdir)/nagios/plugins
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
emake CC=$(tc-getCC) nagios
|
||||
|
||||
if use web; then
|
||||
# Only compile the CGIs/HTML when USE=web is set.
|
||||
emake CC=$(tc-getCC) DESTDIR="${D}" cgis html
|
||||
fi
|
||||
}
|
||||
|
||||
src_install() {
|
||||
dodoc Changelog INSTALLING LEGAL README.asciidoc UPGRADING
|
||||
|
||||
emake DESTDIR="${D}" install-base
|
||||
emake DESTDIR="${D}" install-basic
|
||||
emake DESTDIR="${D}" install-config
|
||||
emake DESTDIR="${D}" install-commandmode
|
||||
|
||||
if use web; then
|
||||
emake DESTDIR="${D}" install-cgis
|
||||
|
||||
# install-html installs the new exfoliation theme
|
||||
emake DESTDIR="${D}" install-html
|
||||
|
||||
if use classicui; then
|
||||
# This overwrites the already-installed exfoliation theme
|
||||
emake DESTDIR="${D}" install-classicui
|
||||
fi
|
||||
|
||||
# Install cute Gentoo icons (bug #388323), setting their
|
||||
# owner, group, and mode to match those of the rest of Nagios's
|
||||
# images.
|
||||
insopts --group=nagios --owner=nagios --mode=0664
|
||||
insinto /usr/share/nagios/htdocs/images/logos
|
||||
doins "${WORKDIR}/${GENTOO_ICONS}"/*.*
|
||||
insopts --mode=0644 # Back to the default...
|
||||
fi
|
||||
|
||||
newinitd "${FILESDIR}"/nagios4-r1 nagios
|
||||
newconfd "${FILESDIR}"/conf.d nagios
|
||||
|
||||
if use web ; then
|
||||
if use apache2 ; then
|
||||
# Install the Nagios configuration file for Apache.
|
||||
insinto "/etc/apache2/modules.d"
|
||||
doins "${FILESDIR}"/99_nagios4.conf
|
||||
elif use lighttpd ; then
|
||||
# Install the Nagios configuration file for Lighttpd.
|
||||
insinto /etc/lighttpd
|
||||
newins "${FILESDIR}/lighttpd_nagios4.conf" nagios.conf
|
||||
else
|
||||
ewarn "${CATEGORY}/${PF} only supports apache or lighttpd"
|
||||
ewarn "out of the box. Since you are not using one of them, you"
|
||||
ewarn "will have to configure your webserver yourself."
|
||||
fi
|
||||
fi
|
||||
|
||||
for dir in etc/nagios var/nagios ; do
|
||||
chown -R nagios:nagios "${D}/${dir}" \
|
||||
|| die "failed chown of ${D}/${dir}"
|
||||
done
|
||||
|
||||
chown -R root:root "${D}/usr/$(get_libdir)/nagios" \
|
||||
|| die "failed chown of ${D}/usr/$(get_libdir)/nagios"
|
||||
|
||||
# The following two find...exec statements will die properly as long
|
||||
# as chmod is only called once (that is, as long as the argument
|
||||
# list is small enough).
|
||||
find "${D}/usr/$(get_libdir)/nagios" -type d \
|
||||
-exec chmod 755 '{}' + || die 'failed to make nagios dirs traversable'
|
||||
|
||||
if use web; then
|
||||
find "${D}/usr/$(get_libdir)/nagios/cgi-bin" -type f \
|
||||
-exec chmod 755 '{}' + || die 'failed to make cgi-bins executable'
|
||||
fi
|
||||
|
||||
keepdir /etc/nagios
|
||||
keepdir /var/nagios
|
||||
keepdir /var/nagios/archives
|
||||
keepdir /var/nagios/rw
|
||||
keepdir /var/nagios/spool/checkresults
|
||||
|
||||
if use !apache2 && use !lighttpd; then
|
||||
chown -R nagios:nagios "${D}"/var/nagios/rw \
|
||||
|| die "failed chown of ${D}/var/nagios/rw"
|
||||
else
|
||||
if use apache2 ; then
|
||||
chown -R nagios:apache "${D}"/var/nagios/rw \
|
||||
|| die "failed chown of ${D}/var/nagios/rw"
|
||||
elif use lighttpd ; then
|
||||
chown -R nagios:lighttpd "${D}"/var/nagios/rw \
|
||||
|| die "failed chown of ${D}/var/nagios/rw"
|
||||
fi
|
||||
fi
|
||||
|
||||
chmod ug+s "${D}"/var/nagios/rw || die "failed chmod of ${D}/var/nagios/rw"
|
||||
chmod 0750 "${D}"/etc/nagios || die "failed chmod of ${D}/etc/nagios"
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
|
||||
if use web; then
|
||||
elog "Note that your web server user requires read-only access to"
|
||||
elog "${ROOT}etc/nagios."
|
||||
|
||||
if use apache2 || use lighttpd ; then
|
||||
elog
|
||||
elog "To that end, we have changed the group of ${ROOT}etc/nagios"
|
||||
elog "to that of your web server user."
|
||||
elog
|
||||
if use apache2; then
|
||||
chown nagios:apache "${ROOT}etc/nagios" \
|
||||
|| die "failed to change group of ${ROOT}etc/nagios"
|
||||
|
||||
elog "To enable the Nagios web front-end, please edit"
|
||||
elog "${ROOT}etc/conf.d/apache2 and add \"-D NAGIOS -D PHP5\""
|
||||
elog "to APACHE2_OPTS. Then Nagios will be available at,"
|
||||
elog
|
||||
elif use lighttpd; then
|
||||
chown nagios:lighttpd "${ROOT}etc/nagios" \
|
||||
|| die "failed to change group of ${ROOT}etc/nagios"
|
||||
elog "To enable the Nagios web front-end, please add"
|
||||
elog "'include \"nagios.conf\"' to the lighttpd configuration"
|
||||
elog "file at ${ROOT}etc/lighttpd/lighttpd.conf. Then Nagios"
|
||||
elog "will be available at,"
|
||||
elog
|
||||
fi
|
||||
|
||||
elog " http://localhost/nagios/"
|
||||
else
|
||||
elog "Since you're not using either Apache or Lighttpd, you"
|
||||
elog "will have to grant the necessary permissions yourself."
|
||||
fi
|
||||
fi
|
||||
|
||||
elog
|
||||
elog "If your kernel has /proc protection, nagios"
|
||||
elog "will not be happy as it relies on accessing the proc"
|
||||
elog "filesystem. You can fix this by adding nagios into"
|
||||
elog "the group wheel, but this is not recomended."
|
||||
elog
|
||||
}
|
||||
@ -0,0 +1,16 @@
|
||||
# Copyright 1999-2017 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=6
|
||||
|
||||
DESCRIPTION="The Nagios metapackage"
|
||||
HOMEPAGE="http://www.nagios.org/"
|
||||
|
||||
LICENSE="GPL-2"
|
||||
SLOT="0"
|
||||
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~sparc ~x86"
|
||||
IUSE=""
|
||||
|
||||
RDEPEND="~net-analyzer/nagios-core-${PV}
|
||||
|| ( net-analyzer/nagios-plugins net-analyzer/monitoring-plugins )"
|
||||
@ -1,5 +1,5 @@
|
||||
# Copyright 1999-2015 Gentoo Foundation
|
||||
# Copyright 1999-2017 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
USE="consolekit declarative dri kde kipi phonon plasma policykit qml qt5 semantic-desktop widgets xcomposite xinerama xscreensaver"
|
||||
USE="consolekit declarative dri kde kipi kwallet phonon plasma policykit qml qt5 semantic-desktop widgets xcomposite xinerama xscreensaver"
|
||||
|
||||
@ -1,29 +0,0 @@
|
||||
# Copyright 1999-2013 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=4
|
||||
|
||||
inherit eutils
|
||||
|
||||
DESCRIPTION="A Modular, Open-Source whole genome assembler"
|
||||
HOMEPAGE="http://amos.sourceforge.net/"
|
||||
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
|
||||
|
||||
LICENSE="Artistic"
|
||||
SLOT="0"
|
||||
KEYWORDS="amd64 x86"
|
||||
IUSE="qt4"
|
||||
|
||||
DEPEND="qt4? ( dev-qt/qtcore:4 )"
|
||||
RDEPEND="${DEPEND}
|
||||
dev-perl/DBI
|
||||
dev-perl/Statistics-Descriptive
|
||||
sci-biology/mummer"
|
||||
|
||||
MAKEOPTS+=" -j1"
|
||||
|
||||
src_prepare() {
|
||||
epatch \
|
||||
"${FILESDIR}"/${P}-gcc-4.7.patch
|
||||
}
|
||||
@ -0,0 +1,116 @@
|
||||
* Use proper AR and not just 'ar'
|
||||
* Fix build system to build in parallel
|
||||
|
||||
--- a/configure.ac
|
||||
+++ b/configure.ac
|
||||
@@ -34,6 +34,7 @@
|
||||
AC_PROG_INSTALL
|
||||
AC_PROG_LN_S
|
||||
AC_PROG_RANLIB
|
||||
+AM_PROG_AR
|
||||
AC_PROG_CPP
|
||||
AC_PATH_PROG(PERL, [perl], [:])
|
||||
AC_PATH_PROG(PYTHON, [python], [:])
|
||||
--- a/src/Align/Makefile.am
|
||||
+++ b/src/Align/Makefile.am
|
||||
@@ -133,7 +133,7 @@
|
||||
|
||||
##-- hash-overlap
|
||||
hash_overlap_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign.a \
|
||||
+ libAlign.a \
|
||||
$(top_builddir)/src/CelMsg/libCelMsg.a \
|
||||
$(top_builddir)/src/Slice/libSlice.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
@@ -172,7 +172,7 @@
|
||||
|
||||
##-- make-consensus
|
||||
make_consensus_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign.a \
|
||||
+ libAlign.a \
|
||||
$(top_builddir)/src/CelMsg/libCelMsg.a \
|
||||
$(top_builddir)/src/Slice/libSlice.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
@@ -182,7 +182,7 @@
|
||||
|
||||
##-- make-consensus_poly
|
||||
make_consensus_poly_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign_poly.a \
|
||||
+ libAlign_poly.a \
|
||||
$(top_builddir)/src/CelMsg/libCelMsg.a \
|
||||
$(top_builddir)/src/Slice/libSlice.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
@@ -192,7 +192,7 @@
|
||||
|
||||
##-- maligntest
|
||||
maligntest_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign.a \
|
||||
+ libAlign.a \
|
||||
$(top_builddir)/src/CelMsg/libCelMsg.a \
|
||||
$(top_builddir)/src/Slice/libSlice.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
@@ -202,7 +202,7 @@
|
||||
|
||||
##-- merge-contigs
|
||||
merge_contigs_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign.a \
|
||||
+ libAlign.a \
|
||||
$(top_builddir)/src/CelMsg/libCelMsg.a \
|
||||
$(top_builddir)/src/Slice/libSlice.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
@@ -235,7 +235,7 @@
|
||||
|
||||
##-- show-ma-asm
|
||||
show_ma_asm_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign.a \
|
||||
+ libAlign.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
$(top_builddir)/src/AMOS/libAMOS.a
|
||||
show_ma_asm_SOURCES = \
|
||||
@@ -261,7 +261,7 @@
|
||||
|
||||
##-- simple-overlap
|
||||
simple_overlap_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign.a \
|
||||
+ libAlign.a \
|
||||
$(top_builddir)/src/CelMsg/libCelMsg.a \
|
||||
$(top_builddir)/src/Slice/libSlice.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
@@ -272,7 +272,7 @@
|
||||
|
||||
##-- test-align
|
||||
test_align_LDADD = \
|
||||
- $(top_builddir)/src/Align/libAlign.a \
|
||||
+ libAlign.a \
|
||||
$(top_builddir)/src/CelMsg/libCelMsg.a \
|
||||
$(top_builddir)/src/Slice/libSlice.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
--- a/src/Bambus/Bundler/Makefile.am
|
||||
+++ b/src/Bambus/Bundler/Makefile.am
|
||||
@@ -47,7 +47,7 @@
|
||||
clk.cc
|
||||
|
||||
MarkRepeats_LDADD = \
|
||||
- $(top_builddir)/src/Bambus/Bundler/libBundler.a \
|
||||
+ libBundler.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
$(top_builddir)/src/AMOS/libAMOS.a \
|
||||
$(top_builddir)/src/GNU/libGNU.a
|
||||
@@ -55,7 +55,7 @@
|
||||
MarkRepeats.cc
|
||||
|
||||
OrientContigs_LDADD = \
|
||||
- $(top_builddir)/src/Bambus/Bundler/libBundler.a \
|
||||
+ libBundler.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
$(top_builddir)/src/AMOS/libAMOS.a \
|
||||
$(top_builddir)/src/GNU/libGNU.a
|
||||
@@ -63,7 +63,7 @@
|
||||
OrientContigs.cc
|
||||
|
||||
FilterEdgesByCluster_LDADD = \
|
||||
- $(top_builddir)/src/Bambus/Bundler/libBundler.a \
|
||||
+ libBundler.a \
|
||||
$(top_builddir)/src/Common/libCommon.a \
|
||||
$(top_builddir)/src/AMOS/libAMOS.a \
|
||||
$(top_builddir)/src/GNU/libGNU.a
|
||||
@ -1,3 +1 @@
|
||||
DIST cd-hit-v4.5.1-2011-01-31.tgz 368740 SHA256 c1c3a3a772fc683fec3ff1763fdeec62a0a2a3925124f7a723fe3b271da35281 SHA512 84beba384eb6e9bcf94c7e2ca63f862493fc0d058ad186752524a09016e01274229ca9b7a5275cd5454f54488235a6949e17090ffbf68ff441a613dbe5cf05a8 WHIRLPOOL 698d72f347b92091ade411bdbf540f4b4eeea6c742d3766e891bede7f1aa03024bd2f611a4235a6dec0ed9b9b5e06b3d69a7b8e6a7ab7d8139297b5a8b0da9d2
|
||||
DIST cd-hit-v4.5.4-2011-03-07.tgz 370264 SHA256 6de9074fada3c5f8109b670b8bdf96679dab45b841d36270d6c5e61a34284f6a SHA512 a093d15e26d6e226e5b37e43ed36affe58c0ee265bd43fd2098a39eafb54c7154ee1a7585da785324dc57532abe3401d48ad5a4a2de080fa6e1422091083683a WHIRLPOOL 3e2ea2db07ecc553d5f03f13a1092e85211257fb4a681629be0350d9cc3f3cc384d24bdb8b3e31d3f469fbc93070363afee608904b9ce3956ca24a8fa6d4d8e5
|
||||
DIST cd-hit-v4.6-2012-04-25.tgz 652228 SHA256 aa91e57bba61f04db39e83cdd6c8cdf082a006ea8c4c818b956b7531e4bcc2e9 SHA512 1004a4190643b6f5f1da067a4b911abc068d0bf7d909edd84f45d5fe9a1b17eb3276c0ddde391cbc5053a9ab979d09cbbe832615b7cce4fc2aeefce1d1bec52c WHIRLPOOL 1c7a50e40e9753c035a2920af09b024e9403f4a7cf1a801b998afd5b64189256857a236439f5b2935603fd4a691a722a9d74c3a373ab66c79faee9d8335834b4
|
||||
DIST cd-hit-4.6.6.tar.gz 1152570 SHA256 97946f8ae62c3efa20ad4c527b8ea22200cf1b75c9941fb14de2bdaf1d6910f1 SHA512 8241d6674fb041559792dbbb58c12b41302d2275d3bacb1362946094b48a0b8e1236e71b5dc77d13405220b60f8253e6f996753a8b051995a72c8353d4333c51 WHIRLPOOL 4ee404e34a9c22aef0b809568aa1a7cefcd8d08e4a8c97d1c65b7692ae14b0567e5cc446054083219b56e89895117f69f786e6183f6c67d03d1f8404f7ba9632
|
||||
|
||||
@ -1,42 +0,0 @@
|
||||
# Copyright 1999-2012 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=3
|
||||
|
||||
inherit eutils flag-o-matic toolchain-funcs
|
||||
|
||||
RELDATE="2011-01-31"
|
||||
RELEASE="${PN}-v${PV}-${RELDATE}"
|
||||
|
||||
DESCRIPTION="Clustering Database at High Identity with Tolerance"
|
||||
HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
|
||||
SRC_URI="https://cdhit.googlecode.com/files/${RELEASE}.tgz"
|
||||
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
|
||||
LICENSE="GPL-2"
|
||||
IUSE="openmp"
|
||||
|
||||
S="${WORKDIR}"/${RELEASE}
|
||||
|
||||
pkg_setup() {
|
||||
use openmp && ! tc-has-openmp && die "Please switch to an openmp compatible compiler"
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
tc-export CXX
|
||||
use openmp || append-flags -DNO_OPENMP
|
||||
epatch "${FILESDIR}"/${PV}-gentoo.patch
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
local myconf=
|
||||
use openmp && myconf="openmp=yes"
|
||||
emake ${myconf} || die
|
||||
}
|
||||
|
||||
src_install() {
|
||||
dobin cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div *.pl || die
|
||||
dodoc ChangeLog cdhit-user-guide.pdf || die
|
||||
}
|
||||
@ -1,43 +0,0 @@
|
||||
# Copyright 1999-2012 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=4
|
||||
|
||||
inherit eutils flag-o-matic toolchain-funcs
|
||||
|
||||
RELDATE="2011-03-07"
|
||||
RELEASE="${PN}-v${PV}-${RELDATE}"
|
||||
|
||||
DESCRIPTION="Clustering Database at High Identity with Tolerance"
|
||||
HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
|
||||
SRC_URI="https://cdhit.googlecode.com/files/${RELEASE}.tgz"
|
||||
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
|
||||
LICENSE="GPL-2"
|
||||
IUSE="openmp"
|
||||
|
||||
S="${WORKDIR}"/${RELEASE}
|
||||
|
||||
pkg_setup() {
|
||||
use openmp && ! tc-has-openmp && die "Please switch to an openmp compatible compiler"
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
tc-export CXX
|
||||
use openmp || append-flags -DNO_OPENMP
|
||||
epatch "${FILESDIR}"/${PV}-gentoo.patch
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
local myconf=
|
||||
use openmp && myconf="openmp=yes"
|
||||
emake ${myconf}
|
||||
}
|
||||
|
||||
src_install() {
|
||||
dodir /usr/bin
|
||||
emake PREFIX="${ED}/usr/bin" install
|
||||
dodoc ChangeLog cdhit-user-guide.pdf
|
||||
}
|
||||
@ -0,0 +1,48 @@
|
||||
# Copyright 1999-2017 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=6
|
||||
|
||||
inherit flag-o-matic toolchain-funcs
|
||||
|
||||
RELDATE="2016-0711"
|
||||
RELEASE="${PN}-v${PV}-${RELDATE}"
|
||||
|
||||
DESCRIPTION="Clustering Database at High Identity with Tolerance"
|
||||
HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
|
||||
SRC_URI="https://github.com/weizhongli/cdhit/releases/download/V${PV}/${RELEASE}.tar.gz -> ${P}.tar.gz"
|
||||
|
||||
LICENSE="GPL-2"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
|
||||
IUSE="openmp"
|
||||
|
||||
RDEPEND="dev-lang/perl"
|
||||
|
||||
S="${WORKDIR}"/${RELEASE}
|
||||
|
||||
PATCHES=(
|
||||
"${FILESDIR}"/${PN}-4.6.6-fix-perl-shebangs.patch
|
||||
"${FILESDIR}"/${PN}-4.6.6-fix-build-system.patch
|
||||
)
|
||||
|
||||
pkg_pretend() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
|
||||
}
|
||||
|
||||
pkg_setup() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
tc-export CXX
|
||||
emake openmp=$(usex openmp)
|
||||
}
|
||||
|
||||
src_install() {
|
||||
dodir /usr/bin
|
||||
PREFIX="${EPREFIX}"/usr/bin default
|
||||
|
||||
dodoc doc/*.pdf
|
||||
}
|
||||
@ -1,44 +0,0 @@
|
||||
# Copyright 1999-2012 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=4
|
||||
|
||||
inherit eutils flag-o-matic toolchain-funcs
|
||||
|
||||
RELDATE="2012-04-25"
|
||||
RELEASE="${PN}-v${PV}-${RELDATE}"
|
||||
|
||||
DESCRIPTION="Clustering Database at High Identity with Tolerance"
|
||||
HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
|
||||
SRC_URI="https://cdhit.googlecode.com/files/${RELEASE}.tgz"
|
||||
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
|
||||
LICENSE="GPL-2"
|
||||
IUSE="doc openmp"
|
||||
|
||||
S="${WORKDIR}"/${RELEASE}
|
||||
|
||||
pkg_setup() {
|
||||
use openmp && ! tc-has-openmp && die "Please switch to an openmp compatible compiler"
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
tc-export CXX
|
||||
use openmp || append-flags -DNO_OPENMP
|
||||
epatch "${FILESDIR}"/${PV}-gentoo.patch
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
local myconf=
|
||||
use openmp && myconf="openmp=yes"
|
||||
emake ${myconf}
|
||||
}
|
||||
|
||||
src_install() {
|
||||
dodir /usr/bin
|
||||
emake PREFIX="${ED}/usr/bin" install
|
||||
dodoc ChangeLog
|
||||
use doc && dodoc doc/*
|
||||
}
|
||||
@ -1,85 +0,0 @@
|
||||
diff --git a/Makefile b/Makefile
|
||||
index f1eaa26..92d3130 100644
|
||||
--- a/Makefile
|
||||
+++ b/Makefile
|
||||
@@ -10,7 +10,7 @@ CCFLAGS = -O2 -DNO_OPENMP
|
||||
# in command line:
|
||||
# make openmp=yes
|
||||
ifeq ($(openmp),yes)
|
||||
-CCFLAGS = -O2 -fopenmp
|
||||
+CXXFLAGS += -fopenmp
|
||||
endif
|
||||
|
||||
# support debugging
|
||||
@@ -18,16 +18,16 @@ endif
|
||||
# make debug=yes
|
||||
# make openmp=yes debug=yes
|
||||
ifeq ($(debug),yes)
|
||||
-CCFLAGS += -ggdb
|
||||
+CXXFLAGS += -ggdb
|
||||
endif
|
||||
|
||||
#LDFLAGS = -static -o
|
||||
-LDFLAGS = -o
|
||||
+LDFLAGS += -o
|
||||
|
||||
PROGS = cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div
|
||||
|
||||
.c++.o:
|
||||
- $(CC) $(CCFLAGS) -c $<
|
||||
+ $(CXX) $(CXXFLAGS) -c $<
|
||||
|
||||
all: $(PROGS)
|
||||
|
||||
@@ -37,39 +37,39 @@ clean:
|
||||
# programs
|
||||
|
||||
cd-hit: cdhit-common.o cdhit-utility.o cdhit.o
|
||||
- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
|
||||
+ $(CXX) $(CXXFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
|
||||
|
||||
cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
|
||||
|
||||
cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
|
||||
|
||||
cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
|
||||
|
||||
cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o
|
||||
- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
|
||||
|
||||
# objects
|
||||
cdhit-common.o: cdhit-common.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-common.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-common.c++ -c
|
||||
|
||||
cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-utility.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-utility.c++ -c
|
||||
|
||||
cdhit.o: cdhit.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit.c++ -c
|
||||
|
||||
cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-2d.c++ -c
|
||||
|
||||
cdhit-est.o: cdhit-est.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est.c++ -c
|
||||
|
||||
cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.c++ -c
|
||||
|
||||
cdhit-div.o: cdhit-div.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-div.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-div.c++ -c
|
||||
|
||||
@ -1,98 +0,0 @@
|
||||
Makefile | 36 ++++++++++++++++++------------------
|
||||
1 files changed, 18 insertions(+), 18 deletions(-)
|
||||
|
||||
diff --git a/Makefile b/Makefile
|
||||
index e8bac1d..bd31093 100644
|
||||
--- a/Makefile
|
||||
+++ b/Makefile
|
||||
@@ -10,7 +10,7 @@ CCFLAGS = -O2 -DNO_OPENMP
|
||||
# in command line:
|
||||
# make openmp=yes
|
||||
ifeq ($(openmp),yes)
|
||||
-CCFLAGS = -O2 -fopenmp
|
||||
+CXXFLAGS += -fopenmp
|
||||
endif
|
||||
|
||||
# support debugging
|
||||
@@ -18,16 +18,16 @@ endif
|
||||
# make debug=yes
|
||||
# make openmp=yes debug=yes
|
||||
ifeq ($(debug),yes)
|
||||
-CCFLAGS += -ggdb
|
||||
+CXXFLAGS += -ggdb
|
||||
endif
|
||||
|
||||
#LDFLAGS = -static -o
|
||||
-LDFLAGS = -o
|
||||
+LDFLAGS += -o
|
||||
|
||||
PROGS = cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454
|
||||
|
||||
.c++.o:
|
||||
- $(CC) $(CCFLAGS) -c $<
|
||||
+ $(CXX) $(CXXFLAGS) -c $<
|
||||
|
||||
all: $(PROGS)
|
||||
|
||||
@@ -37,47 +37,47 @@ clean:
|
||||
# programs
|
||||
|
||||
cd-hit: cdhit-common.o cdhit-utility.o cdhit.o
|
||||
- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
|
||||
+ $(CXX) $(CXXFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
|
||||
|
||||
cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
|
||||
|
||||
cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
|
||||
|
||||
cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
|
||||
|
||||
cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o
|
||||
- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
|
||||
|
||||
cd-hit-454: cdhit-common.o cdhit-utility.o cdhit-454.o
|
||||
- $(CC) $(CCFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
|
||||
|
||||
# objects
|
||||
cdhit-common.o: cdhit-common.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-common.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-common.c++ -c
|
||||
|
||||
cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-utility.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-utility.c++ -c
|
||||
|
||||
cdhit.o: cdhit.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit.c++ -c
|
||||
|
||||
cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-2d.c++ -c
|
||||
|
||||
cdhit-est.o: cdhit-est.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est.c++ -c
|
||||
|
||||
cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.c++ -c
|
||||
|
||||
cdhit-div.o: cdhit-div.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-div.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-div.c++ -c
|
||||
|
||||
cdhit-454.o: cdhit-454.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-454.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-454.c++ -c
|
||||
|
||||
PREFIX ?= /usr/local/bin
|
||||
|
||||
@ -1,117 +0,0 @@
|
||||
Makefile | 47 ++++++++++++++++++++++-------------------------
|
||||
1 files changed, 22 insertions(+), 25 deletions(-)
|
||||
|
||||
diff --git a/Makefile b/Makefile
|
||||
index e9796a1..97dd72b 100644
|
||||
--- a/Makefile
|
||||
+++ b/Makefile
|
||||
@@ -1,16 +1,13 @@
|
||||
-
|
||||
-CC = g++ -Wall -ggdb
|
||||
-CC = g++ -pg
|
||||
-CC = g++
|
||||
+CXX ?= g++
|
||||
|
||||
# without OpenMP
|
||||
-CCFLAGS = -DNO_OPENMP
|
||||
+#CXXFLAGS = -DNO_OPENMP
|
||||
|
||||
# with OpenMP
|
||||
# in command line:
|
||||
# make openmp=yes
|
||||
ifeq ($(openmp),yes)
|
||||
-CCFLAGS = -fopenmp
|
||||
+CXXFLAGS += -fopenmp
|
||||
endif
|
||||
|
||||
# support debugging
|
||||
@@ -18,22 +15,22 @@ endif
|
||||
# make debug=yes
|
||||
# make openmp=yes debug=yes
|
||||
ifeq ($(debug),yes)
|
||||
-CCFLAGS += -ggdb
|
||||
+CXXFLAGS +=
|
||||
else
|
||||
-CCFLAGS += -O2
|
||||
+CXXFLAGS +=
|
||||
endif
|
||||
|
||||
ifdef MAX_SEQ
|
||||
-CCFLAGS += -DMAX_SEQ=$(MAX_SEQ)
|
||||
+CXXFLAGS += -DMAX_SEQ=$(MAX_SEQ)
|
||||
endif
|
||||
|
||||
#LDFLAGS = -static -o
|
||||
-LDFLAGS = -o
|
||||
+#LDFLAGS += -o
|
||||
|
||||
PROGS = cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454
|
||||
|
||||
.c++.o:
|
||||
- $(CC) $(CCFLAGS) -c $<
|
||||
+ $(CXX) $(CXXFLAGS) -c $<
|
||||
|
||||
all: $(PROGS)
|
||||
|
||||
@@ -43,47 +40,47 @@ clean:
|
||||
# programs
|
||||
|
||||
cd-hit: cdhit-common.o cdhit-utility.o cdhit.o
|
||||
- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
|
||||
+ $(CXX) $(CXXFLAGS) $(LDFLAGS) cdhit.o cdhit-common.o cdhit-utility.o -o cd-hit
|
||||
|
||||
cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
|
||||
+ $(CXX) $(CXXFLAGS) $(LDFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o -o cd-hit-2d
|
||||
|
||||
cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
|
||||
+ $(CXX) $(CXXFLAGS) $(LDFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o -o cd-hit-est
|
||||
|
||||
cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
|
||||
+ $(CXX) $(CXXFLAGS) $(LDFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o -o cd-hit-est-2d
|
||||
|
||||
cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o
|
||||
- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
|
||||
+ $(CXX) $(CXXFLAGS) $(LDFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o -o cd-hit-div
|
||||
|
||||
cd-hit-454: cdhit-common.o cdhit-utility.o cdhit-454.o
|
||||
- $(CC) $(CCFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
|
||||
+ $(CXX) $(CXXFLAGS) $(LDFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o -o cd-hit-454
|
||||
|
||||
# objects
|
||||
cdhit-common.o: cdhit-common.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-common.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-common.c++ -c
|
||||
|
||||
cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-utility.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-utility.c++ -c
|
||||
|
||||
cdhit.o: cdhit.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit.c++ -c
|
||||
|
||||
cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-2d.c++ -c
|
||||
|
||||
cdhit-est.o: cdhit-est.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est.c++ -c
|
||||
|
||||
cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.c++ -c
|
||||
|
||||
cdhit-div.o: cdhit-div.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-div.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-div.c++ -c
|
||||
|
||||
cdhit-454.o: cdhit-454.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-454.c++ -c
|
||||
+ $(CXX) $(CXXFLAGS) cdhit-454.c++ -c
|
||||
|
||||
PREFIX ?= /usr/local/bin
|
||||
|
||||
@ -0,0 +1,122 @@
|
||||
Fix build system, in order to honour user variables
|
||||
|
||||
--- a/makefile
|
||||
+++ b/makefile
|
||||
@@ -1,7 +1,4 @@
|
||||
-
|
||||
-CC = g++ -Wall -ggdb
|
||||
-CC = g++ -pg
|
||||
-CC = g++
|
||||
+CXX ?= g++
|
||||
|
||||
# without OpenMP
|
||||
|
||||
@@ -9,35 +6,19 @@
|
||||
# in command line:
|
||||
# make openmp=yes
|
||||
ifeq ($(openmp),no)
|
||||
- CCFLAGS = -DNO_OPENMP
|
||||
-else
|
||||
- CCFLAGS = -fopenmp
|
||||
-endif
|
||||
-
|
||||
-# support debugging
|
||||
-# in command line:
|
||||
-# make debug=yes
|
||||
-# make openmp=yes debug=yes
|
||||
-ifeq ($(debug),yes)
|
||||
-CCFLAGS += -ggdb
|
||||
+ my_CPPFLAGS = -DNO_OPENMP
|
||||
else
|
||||
-CCFLAGS += -O2
|
||||
+ my_CXXFLAGS = -fopenmp
|
||||
endif
|
||||
|
||||
ifdef MAX_SEQ
|
||||
-CCFLAGS += -DMAX_SEQ=$(MAX_SEQ)
|
||||
+my_CPPFLAGS += -DMAX_SEQ=$(MAX_SEQ)
|
||||
endif
|
||||
|
||||
-#LDFLAGS = -static -o
|
||||
-LDFLAGS += -o
|
||||
-
|
||||
PROGS = cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454
|
||||
|
||||
-# Propagate hardening flags
|
||||
-CCFLAGS := $(CPPFLAGS) $(CCFLAGS) $(CXXFLAGS)
|
||||
-
|
||||
.c++.o:
|
||||
- $(CC) $(CCFLAGS) -c $<
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) -c $<
|
||||
|
||||
all: $(PROGS)
|
||||
|
||||
@@ -47,52 +28,52 @@
|
||||
# programs
|
||||
|
||||
cd-hit: cdhit-common.o cdhit-utility.o cdhit.o
|
||||
- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) cdhit.o cdhit-common.o cdhit-utility.o -o cd-hit
|
||||
|
||||
cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o -o cd-hit-2d
|
||||
|
||||
cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o -o cd-hit-est
|
||||
|
||||
cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o -o cd-hit-est-2d
|
||||
|
||||
cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o
|
||||
- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o -o cd-hit-div
|
||||
|
||||
cd-hit-454: cdhit-common.o cdhit-utility.o cdhit-454.o
|
||||
- $(CC) $(CCFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-454
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(LDFLAGS) cdhit-454.o cdhit-common.o cdhit-utility.o -o cd-hit-454
|
||||
|
||||
# objects
|
||||
cdhit-common.o: cdhit-common.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-common.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit-common.c++ -c
|
||||
|
||||
cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-utility.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit-utility.c++ -c
|
||||
|
||||
cdhit.o: cdhit.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit.c++ -c
|
||||
|
||||
cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-2d.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit-2d.c++ -c
|
||||
|
||||
cdhit-est.o: cdhit-est.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit-est.c++ -c
|
||||
|
||||
cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h
|
||||
- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit-est-2d.c++ -c
|
||||
|
||||
cdhit-div.o: cdhit-div.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-div.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit-div.c++ -c
|
||||
|
||||
cdhit-454.o: cdhit-454.c++ cdhit-common.h
|
||||
- $(CC) $(CCFLAGS) cdhit-454.c++ -c
|
||||
+ $(CXX) $(my_CXXFLAGS) $(CXXFLAGS) $(my_CPPFLAGS) $(CPPFLAGS) cdhit-454.c++ -c
|
||||
|
||||
PREFIX ?= /usr/local/bin
|
||||
|
||||
install:
|
||||
for prog in $(PROGS); do \
|
||||
- install -m 0755 $$prog $(PREFIX); \
|
||||
+ install -m 0755 $$prog $(DESTDIR)$(PREFIX); \
|
||||
done
|
||||
- install -m 0755 *.pl $(PREFIX);
|
||||
+ install -m 0755 *.pl $(DESTDIR)$(PREFIX);
|
||||
@ -0,0 +1,219 @@
|
||||
Make perl shebangs more Prefix friendly
|
||||
See also: https://blogs.gentoo.org/mgorny/2016/02/08/a-quick-note-on-portable-shebangs/
|
||||
|
||||
--- a/cd-hit-2d-para.pl
|
||||
+++ b/cd-hit-2d-para.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl -w
|
||||
+#!/usr/bin/env perl
|
||||
# =============================================================================
|
||||
# CD-HIT
|
||||
# http://cd-hit.org/
|
||||
--- a/cd-hit-div.pl
|
||||
+++ b/cd-hit-div.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
#not like cd-hit-div, this script do not sort input
|
||||
#or throw away seq
|
||||
--- a/cd-hit-para.pl
|
||||
+++ b/cd-hit-para.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl -w
|
||||
+#!/usr/bin/env perl
|
||||
# =============================================================================
|
||||
# CD-HIT
|
||||
# http://cd-hit.org/
|
||||
--- a/clstr2tree.pl
|
||||
+++ b/clstr2tree.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
$clstr = shift;
|
||||
$fr = shift; # for nr80.clstr $fr = 0.8
|
||||
--- a/clstr2txt.pl
|
||||
+++ b/clstr2txt.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
my $no = 0;
|
||||
my $clstr_no = "";
|
||||
--- a/clstr2xml.pl
|
||||
+++ b/clstr2xml.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
#usage: clstr_xml.pl [-len|-size] level1.clstr [level2.clstr level3.clstr ...]
|
||||
#purpose: to create xml file from cd-hit or hierarchical cd-hit(h-cd-hit) results
|
||||
--- a/clstr_cut.pl
|
||||
+++ b/clstr_cut.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
#keep only top $no proteins in cluster
|
||||
|
||||
--- a/clstr_merge_noorder.pl
|
||||
+++ b/clstr_merge_noorder.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
# order of clusters don't need to be the same
|
||||
# but then I have to read everything into memory
|
||||
--- a/clstr_merge.pl
|
||||
+++ b/clstr_merge.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
# the order of clusters need to be identical
|
||||
my ($master_clstr, @clstr) = @ARGV;
|
||||
--- a/clstr_quality_eval_by_link.pl
|
||||
+++ b/clstr_quality_eval_by_link.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
## calculate the sensitivity and specificity of clusters
|
||||
## if the input fasta file has pre-defined classification term
|
||||
--- a/clstr_quality_eval.pl
|
||||
+++ b/clstr_quality_eval.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
## calculate the sensitivity and specificity of clusters
|
||||
## if the input fasta file has pre-defined classification term
|
||||
--- a/clstr_reduce.pl
|
||||
+++ b/clstr_reduce.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
|
||||
$file90 = shift;
|
||||
--- a/clstr_renumber.pl
|
||||
+++ b/clstr_renumber.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
$no = 0;
|
||||
while($ll=<>){
|
||||
if ($ll =~ /^>Cluster (\d+)/) {
|
||||
--- a/clstr_rep.pl
|
||||
+++ b/clstr_rep.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
$rep = "";
|
||||
$no = 0;
|
||||
--- a/clstr_reps_faa_rev.pl
|
||||
+++ b/clstr_reps_faa_rev.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
# output single fasta file
|
||||
# for each cluster output at least $cutoff seqs
|
||||
|
||||
--- a/clstr_rev.pl
|
||||
+++ b/clstr_rev.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
# if nr90 from nr100 and
|
||||
# nr80 from nr90, so I have nr90.clstr and nr80.clstr
|
||||
# but, in nr80.clstr, some gi numbers whose from nr100 are there
|
||||
--- a/clstr_select.pl
|
||||
+++ b/clstr_select.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
#my $by = shift;
|
||||
my $min;
|
||||
--- a/clstr_select_rep.pl
|
||||
+++ b/clstr_select_rep.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
#my $by = shift;
|
||||
my $min;
|
||||
--- a/clstr_size_histogram.pl
|
||||
+++ b/clstr_size_histogram.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
if(@ARGV==0){
|
||||
print "Usage:\n\tclstr_size_histogram.pl [-bin N] clstr_file\n";
|
||||
--- a/clstr_size_stat.pl
|
||||
+++ b/clstr_size_stat.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
if(@ARGV==0){
|
||||
print "Usage:\n\tclstr_size_stat.pl clstr_file\n";
|
||||
--- a/clstr_sort_by.pl
|
||||
+++ b/clstr_sort_by.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
my $sort_by_what = shift;
|
||||
$sort_by_what = "no" unless $sort_by_what;
|
||||
--- a/clstr_sort_prot_by.pl
|
||||
+++ b/clstr_sort_prot_by.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
my $sort_by = shift;
|
||||
$sort_by = "len" unless ($sort_by);
|
||||
--- a/clstr_sql_tbl.pl
|
||||
+++ b/clstr_sql_tbl.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
if(@ARGV==0){
|
||||
print "Usage:\n\tclstr_sql_tbl.pl clstr_file tbl_file\n";
|
||||
--- a/clstr_sql_tbl_sort.pl
|
||||
+++ b/clstr_sql_tbl_sort.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
if(@ARGV==0){
|
||||
print "Usage:\n\tclstr_sql_tbl_sort.pl table_file level\n";
|
||||
--- a/make_multi_seq.pl
|
||||
+++ b/make_multi_seq.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
#note you have to use "-d 0" in the cd-hit run
|
||||
#note you better to use "-g 1" in the cd-hit run
|
||||
--- a/plot_2d.pl
|
||||
+++ b/plot_2d.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
use Image::Magick;
|
||||
|
||||
--- a/plot_len1.pl
|
||||
+++ b/plot_len1.pl
|
||||
@@ -1,4 +1,4 @@
|
||||
-#!/usr/bin/perl
|
||||
+#!/usr/bin/env perl
|
||||
|
||||
$file90 = shift;
|
||||
$segs = shift;
|
||||
@ -1,2 +1,3 @@
|
||||
DIST QupZilla-2.0.2.tar.xz 2705700 SHA256 da4f9b3441386cfcc3000b950c40daa8818380d69b5054f156a345fdbac3855a SHA512 52a549a58545fc67a213a6aba50772974e2558887cc32d56a702185170e0a6048ac8c9744e8d4803b7d7ad09bdbb59d8562992b201cd99833dd055ee2506c08a WHIRLPOOL e3ae7d05dcc329e53103d273d9882a44fc6f46568078343c78d98192b6e960c623331e307f6ba414371eff29c505c9881c80414eb2670d6bfeef2490ddeea74e
|
||||
DIST QupZilla-2.1.1.tar.xz 2769088 SHA256 5c2137875574607c017f3f94288f08f8ec4187d0d0ea4877f923437aeb08def5 SHA512 ae52fb0c3bd9f8445fd27589954b04f467fa00730a99652a19daf81dcc93e30eca76a16f14f3fba144e1d7feccf2685bd5855e896b938356f1a67daad9a340e1 WHIRLPOOL 61cbe3fe7ccce7027edf09e9eb820a6a82460d594d6efdbb741b8b301a5400fc7b2362429775d575e1f793b457425afe8cf7991c210ed97b277ce7a2d1a232b7
|
||||
DIST qupzilla-plugins-2016.05.02.tar.gz 425314 SHA256 276491a89daf1b64d6eab861b54d313e85c815d322bf51d47491f00ad22f55bc SHA512 b294ecb2372b3267603a43bc7412ab75d2cd29a8c4667331f0d2c74e3b0b99d0c2a005b9e4854c6d777894522bba9fb3b1607e85e8da6dcbaa760c9ddc6288f2 WHIRLPOOL 471807dc70dd3ea072f1e429a6e67ea97ecd5eadc02ac19debdcddfca4f5cb8e1767ad754aed1ff8a557f0734460a87b4e2d5e01ea57d07c473f48b006e32ef1
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
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Reference in new issue