From 368d7027fdb5b418fd6488726eb14e5d9825a489 Mon Sep 17 00:00:00 2001 From: root Date: Tue, 31 Jan 2017 13:32:29 +0300 Subject: [PATCH] Sync with portage [Tue Jan 31 13:32:29 MSK 2017]. --- app-arch/mt-st/mt-st-1.3.ebuild | 2 +- .../emacs-vcs/emacs-vcs-26.0.9999.ebuild | 2 +- dev-lua/lpeg/Manifest | 1 + dev-lua/lpeg/lpeg-1.0.1.ebuild | 51 ++ ...twebengine-5.7.1-fix-audio-detection.patch | 23 + .../qtwebengine/qtwebengine-5.7.1-r1.ebuild | 117 ++++ dev-ros/python_qt_binding/Manifest | 1 + .../python_qt_binding-0.3.2.ebuild | 21 + dev-ruby/nio4r/Manifest | 1 + dev-ruby/nio4r/nio4r-2.0.0.ebuild | 39 ++ dev-ruby/power_assert/Manifest | 1 + .../power_assert/power_assert-1.0.1.ebuild | 36 ++ dev-ruby/simplecov/Manifest | 1 + dev-ruby/simplecov/simplecov-0.13.0.ebuild | 42 ++ dev-tex/latex2html/Manifest | 1 + .../latex2html/files/latex2html-tests.patch | 26 + dev-tex/latex2html/latex2html-2017.2.ebuild | 77 +++ dev-tex/latexmk/Manifest | 1 + dev-tex/latexmk/latexmk-452c.ebuild | 30 + dev-util/cmdtest/Manifest | 1 + dev-util/cmdtest/cmdtest-0.27.ebuild | 28 + mail-mta/exim/Manifest | 2 + mail-mta/exim/exim-4.89_rc1.ebuild | 529 ++++++++++++++++++ media-libs/imlib/imlib-1.9.15-r5.ebuild | 2 +- .../musicbrainz/musicbrainz-5.1.0.ebuild | 4 +- .../frei0r-plugins-1.5.0.ebuild | 2 +- .../qmpdclient/qmpdclient-1.2.2-r2.ebuild | 2 +- metadata/dtd/timestamp.chk | 2 +- metadata/glsa/timestamp.chk | 2 +- metadata/md5-cache/app-arch/mt-st-1.3 | 4 +- .../md5-cache/app-editors/emacs-vcs-26.0.9999 | 2 +- metadata/md5-cache/dev-lua/lpeg-1.0.1 | 13 + .../md5-cache/dev-qt/qtwebengine-5.7.1-r1 | 14 + .../md5-cache/dev-ros/python_qt_binding-0.3.2 | 13 + metadata/md5-cache/dev-ruby/nio4r-2.0.0 | 14 + .../md5-cache/dev-ruby/power_assert-1.0.1 | 14 + metadata/md5-cache/dev-ruby/simplecov-0.13.0 | 14 + metadata/md5-cache/dev-tex/latex2html-2017.2 | 12 + metadata/md5-cache/dev-tex/latexmk-452c | 12 + metadata/md5-cache/dev-util/cmdtest-0.27 | 14 + metadata/md5-cache/mail-mta/exim-4.89_rc1 | 14 + metadata/md5-cache/media-libs/imlib-1.9.15-r5 | 4 +- .../md5-cache/media-libs/musicbrainz-5.1.0 | 4 +- .../media-plugins/frei0r-plugins-1.5.0 | 4 +- .../md5-cache/media-sound/qmpdclient-1.2.2-r2 | 4 +- metadata/md5-cache/net-analyzer/tcpdump-4.9.0 | 4 +- metadata/md5-cache/net-proxy/haproxy-1.7.2 | 14 + metadata/md5-cache/net-proxy/squid-3.5.19 | 14 - metadata/md5-cache/net-proxy/squid-3.5.20 | 14 - metadata/md5-cache/net-proxy/squid-3.5.21 | 14 - metadata/md5-cache/net-proxy/squid-3.5.22 | 14 - .../md5-cache/sci-libs/opencascade-6.7.1-r1 | 4 +- .../md5-cache/sci-libs/opencascade-6.8.0-r1 | 4 +- .../md5-cache/sci-libs/opencascade-6.9.0-r1 | 4 +- .../md5-cache/sci-libs/opencascade-6.9.1-r1 | 4 +- metadata/md5-cache/sci-libs/rtabmap-0.11.14 | 13 + metadata/md5-cache/sys-apps/portage-2.3.3 | 4 +- metadata/md5-cache/virtual/acl-0-r2 | 4 +- metadata/md5-cache/virtual/cron-0-r1 | 4 +- metadata/md5-cache/virtual/libiconv-0-r1 | 4 +- metadata/md5-cache/virtual/libiconv-0-r2 | 4 +- metadata/md5-cache/virtual/libintl-0-r1 | 4 +- metadata/md5-cache/virtual/libintl-0-r2 | 2 +- metadata/md5-cache/virtual/mta-1 | 4 +- ...4.0.2463.0 => opera-developer-44.0.2487.0} | 2 +- metadata/news/timestamp.chk | 2 +- metadata/projects.xml | 5 + metadata/timestamp | 2 +- metadata/timestamp.chk | 2 +- metadata/timestamp.x | 2 +- metadata/xml-schema/timestamp.chk | 2 +- net-analyzer/tcpdump/tcpdump-4.9.0.ebuild | 2 +- net-proxy/haproxy/Manifest | 1 + net-proxy/haproxy/haproxy-1.7.2.ebuild | 166 ++++++ net-proxy/squid/Manifest | 4 - net-proxy/squid/squid-3.5.19.ebuild | 238 -------- net-proxy/squid/squid-3.5.20.ebuild | 238 -------- net-proxy/squid/squid-3.5.21.ebuild | 241 -------- net-proxy/squid/squid-3.5.22.ebuild | 241 -------- profiles/package.mask | 4 + .../PyMca/files/4.4.1_p1-gentoo.patch | 40 -- .../PyMca/files/4.4.1_p1-impl-dec.patch | 12 - sci-chemistry/acpype/files/acpype.patch | 37 -- .../aria/files/aria-2.3.2-python.patch | 30 - .../files/aria-2.3.2-through-space-2.patch | 139 ----- .../aria/files/aria-2.3.2-through-space.patch | 118 ---- .../autodock/files/4.0.1-gcc-4.3.patch | 10 - .../autodock_vina/files/1.1.1-gentoo.patch | 68 --- .../0.14.0_pre1-piddle-Fix-assertions.patch | 48 -- .../burrow-owl/files/1.4-glibc-2.12.patch | 38 -- .../burrow-owl/files/1.4-include.patch | 12 - .../files/burrow-owl-1.5-prll.patch | 20 - sci-chemistry/ccpn/files/talosn.patch | 16 - .../coot/files/0.6.2-clipper-config.patch | 17 - sci-chemistry/coot/files/0.6.2-gl.patch | 10 - sci-chemistry/coot/files/0.6.2-libpng15.patch | 29 - .../coot/files/0.6.2-mmdb-config.patch | 18 - sci-chemistry/coot/files/0.6.2-ssm.patch | 56 -- sci-chemistry/coot/files/0.6.2-test.patch | 16 - .../coot/files/coot-0.7-clipper-config.patch | 17 - .../coot/files/coot-0.7-goocanvas.patch | 25 - .../coot/files/coot-0.7-mmdb-config.patch | 18 - sci-chemistry/coot/files/coot-0.7-ssm.patch | 56 -- sci-chemistry/dssp/files/Makefile | 7 - .../files/easychem-0.6-prestrip.patch | 10 - .../gabedit/files/gabedit-2.4.2-gold.patch | 16 - .../ghemical/files/ghemical-gcc43.patch | 14 - .../gsim/files/0.20.1-build.conf.patch | 44 -- .../gsim/files/gsim-21.0-build.conf.patch | 42 -- .../files/mead-2.2.7-respect-cflags.patch | 57 -- .../namd/files/namd-2.6-gentoo.patch | 107 ---- .../namd/files/namd-2.7-gentoo.patch | 117 ---- .../namd/files/namd-2.7-ldflags.patch | 41 -- .../namd/files/namd-2.7_beta2-gentoo.patch | 126 ----- .../namd/files/namd-barrier-fix-gentoo.patch | 61 -- .../namd/files/namd-fftw-lib-gentoo.patch | 15 - .../namd/files/namd-makefile-gentoo.patch | 88 --- .../namd/files/namd-tcl-lib-gentoo.patch | 16 - .../files/openbabel-perl-2.3.0-makefile.patch | 28 - .../files/openbabel-perl-2.3.0-swig.patch | 25 - .../files/openbabel-perl-2.3.1-makefile.patch | 9 - .../files/20110126-buffer-overflow.patch | 15 - .../files/pymol-1.7.3.1-maeffplugin.cpp.patch | 11 - .../raster3d/files/2.9.1-as-needed.patch | 41 -- .../files/raster3d-gcc-4.1-gentoo.patch | 74 --- .../shelx/files/20060317-autotool.patch | 47 -- .../shelx/files/20060317-gfortran.patch | 20 - sci-chemistry/sparky/files/3.115-fpic.patch | 42 -- .../sparky/files/3.115-wrapper.patch | 41 -- sci-chemistry/sparky/files/fix-install.patch | 259 --------- .../tinker/files/5.1.09-Makefile.patch | 13 - sci-chemistry/tinker/files/6-openmp.patch | 15 - .../2.4.1-change-default-path-to-usr.patch | 11 - ...2.4.1-look-for-python-in-right-place.patch | 20 - .../2.4.1-use-root-for-app-defaults.patch | 20 - .../vmd/files/vmd-1.9.1-tcl8.6.patch | 25 - .../files/wxmacmolplt-7.4.2-glew.patch | 12 - .../clipper/files/2.1_p100511-makefile.patch | 23 - .../clipper/files/20091215-missing-var.patch | 13 - ...clipper-2.1_p100511-outofsourcebuild.patch | 16 - .../files/libghemical-2.98-gcc43.patch | 43 -- .../libghemical/files/libghemical-gcc43.patch | 21 - .../opencascade/opencascade-6.7.1-r1.ebuild | 7 +- .../opencascade/opencascade-6.8.0-r1.ebuild | 7 +- .../opencascade/opencascade-6.9.0-r1.ebuild | 7 +- .../opencascade/opencascade-6.9.1-r1.ebuild | 7 +- .../files/3.1-chemshift.patch | 33 -- .../rosetta-fragments/files/3.1-nnmake.patch | 107 ---- sci-libs/rtabmap/Manifest | 1 + sci-libs/rtabmap/rtabmap-0.11.14.ebuild | 55 ++ .../files/hoomd-blue-2.0.1-cxx11.patch | 53 -- sys-apps/portage/portage-2.3.3.ebuild | 2 +- virtual/acl/acl-0-r2.ebuild | 7 +- virtual/cron/cron-0-r1.ebuild | 8 +- virtual/libiconv/libiconv-0-r1.ebuild | 6 +- virtual/libiconv/libiconv-0-r2.ebuild | 6 +- virtual/libintl/libintl-0-r1.ebuild | 6 +- virtual/libintl/libintl-0-r2.ebuild | 4 +- virtual/mta/mta-1.ebuild | 9 +- www-client/opera-developer/Manifest | 4 +- ...ild => opera-developer-44.0.2487.0.ebuild} | 0 161 files changed, 1496 insertions(+), 3776 deletions(-) create mode 100644 dev-lua/lpeg/lpeg-1.0.1.ebuild create mode 100644 dev-qt/qtwebengine/files/qtwebengine-5.7.1-fix-audio-detection.patch create mode 100644 dev-qt/qtwebengine/qtwebengine-5.7.1-r1.ebuild create mode 100644 dev-ros/python_qt_binding/python_qt_binding-0.3.2.ebuild create mode 100644 dev-ruby/nio4r/nio4r-2.0.0.ebuild create mode 100644 dev-ruby/power_assert/power_assert-1.0.1.ebuild create mode 100644 dev-ruby/simplecov/simplecov-0.13.0.ebuild create mode 100644 dev-tex/latex2html/files/latex2html-tests.patch create mode 100644 dev-tex/latex2html/latex2html-2017.2.ebuild create mode 100644 dev-tex/latexmk/latexmk-452c.ebuild create mode 100644 dev-util/cmdtest/cmdtest-0.27.ebuild create mode 100644 mail-mta/exim/exim-4.89_rc1.ebuild create mode 100644 metadata/md5-cache/dev-lua/lpeg-1.0.1 create mode 100644 metadata/md5-cache/dev-qt/qtwebengine-5.7.1-r1 create mode 100644 metadata/md5-cache/dev-ros/python_qt_binding-0.3.2 create mode 100644 metadata/md5-cache/dev-ruby/nio4r-2.0.0 create mode 100644 metadata/md5-cache/dev-ruby/power_assert-1.0.1 create mode 100644 metadata/md5-cache/dev-ruby/simplecov-0.13.0 create mode 100644 metadata/md5-cache/dev-tex/latex2html-2017.2 create mode 100644 metadata/md5-cache/dev-tex/latexmk-452c create mode 100644 metadata/md5-cache/dev-util/cmdtest-0.27 create mode 100644 metadata/md5-cache/mail-mta/exim-4.89_rc1 create mode 100644 metadata/md5-cache/net-proxy/haproxy-1.7.2 delete mode 100644 metadata/md5-cache/net-proxy/squid-3.5.19 delete mode 100644 metadata/md5-cache/net-proxy/squid-3.5.20 delete mode 100644 metadata/md5-cache/net-proxy/squid-3.5.21 delete mode 100644 metadata/md5-cache/net-proxy/squid-3.5.22 create mode 100644 metadata/md5-cache/sci-libs/rtabmap-0.11.14 rename metadata/md5-cache/www-client/{opera-developer-44.0.2463.0 => opera-developer-44.0.2487.0} (90%) create mode 100644 net-proxy/haproxy/haproxy-1.7.2.ebuild delete mode 100644 net-proxy/squid/squid-3.5.19.ebuild delete mode 100644 net-proxy/squid/squid-3.5.20.ebuild delete mode 100644 net-proxy/squid/squid-3.5.21.ebuild delete mode 100644 net-proxy/squid/squid-3.5.22.ebuild delete mode 100644 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delete mode 100644 sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.4.2-glew.patch delete mode 100644 sci-libs/clipper/files/2.1_p100511-makefile.patch delete mode 100644 sci-libs/clipper/files/20091215-missing-var.patch delete mode 100644 sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch delete mode 100644 sci-libs/libghemical/files/libghemical-2.98-gcc43.patch delete mode 100644 sci-libs/libghemical/files/libghemical-gcc43.patch delete mode 100644 sci-libs/rosetta-fragments/files/3.1-chemshift.patch delete mode 100644 sci-libs/rosetta-fragments/files/3.1-nnmake.patch create mode 100644 sci-libs/rtabmap/rtabmap-0.11.14.ebuild delete mode 100644 sci-physics/hoomd-blue/files/hoomd-blue-2.0.1-cxx11.patch rename www-client/opera-developer/{opera-developer-44.0.2463.0.ebuild => opera-developer-44.0.2487.0.ebuild} (100%) diff --git a/app-arch/mt-st/mt-st-1.3.ebuild b/app-arch/mt-st/mt-st-1.3.ebuild index b7e3e60a8647..35aec8b0b65a 100644 --- a/app-arch/mt-st/mt-st-1.3.ebuild +++ b/app-arch/mt-st/mt-st-1.3.ebuild @@ -12,7 +12,7 @@ SRC_URI="${HOMEPAGE}/releases/download/${P}/${P}.tar.gz" LICENSE="GPL-2" SLOT="0" -KEYWORDS="~alpha amd64 ~hppa ia64 ~mips ppc ppc64 sparc x86" +KEYWORDS="alpha amd64 hppa ia64 ~mips ppc ppc64 sparc x86" src_compile() { emake CC="$(tc-getCC)" CFLAGS="${CFLAGS} ${LDFLAGS}" diff --git a/app-editors/emacs-vcs/emacs-vcs-26.0.9999.ebuild b/app-editors/emacs-vcs/emacs-vcs-26.0.9999.ebuild index cc111aa172c7..1dc6fab1f244 100644 --- a/app-editors/emacs-vcs/emacs-vcs-26.0.9999.ebuild +++ b/app-editors/emacs-vcs/emacs-vcs-26.0.9999.ebuild @@ -116,7 +116,7 @@ src_prepare() { [[ ${FULL_VERSION} =~ ^${PV%.*}(\..*)?$ ]] \ || die "Upstream version number changed to ${FULL_VERSION}" - ( autoreconf() { :; }; . autogen.sh --no-check ) || die #605400 + bash -c "autoreconf() { :; }; . autogen.sh --no-check" || die #605400 fi eapply_user diff --git a/dev-lua/lpeg/Manifest b/dev-lua/lpeg/Manifest index 851d00be389c..db3af4098d37 100644 --- a/dev-lua/lpeg/Manifest +++ b/dev-lua/lpeg/Manifest @@ -2,3 +2,4 @@ DIST lpeg-0.12.1.tar.gz 67519 SHA256 60c6752dd043034c01929b04dab377d139f53bc0987 DIST lpeg-0.12.2.tar.gz 68122 SHA256 6aad270b91d1b1c6fd75f68e162329a04a644e50e917d55f46cc8384b7120004 SHA512 81505674473d83e2c777d470cd6ba4eead48ecc32e58e52bc192ca7a167f882e722c5a0cae62937fb3f5f71d6216de1ba4ea3d932e72265028f293d778df5e9e WHIRLPOOL df86921662b812ede574a602e84bc0dc581006b5027f40f3a6c0e15e8ac03dbea40ab3b5c8417143a14a25e953f084818b80af317d17dacdda97283366c51632 DIST lpeg-0.12.tar.gz 66649 SHA256 efa545144cd219eee823af7624d90f78c2230677ba740b7151c5d0c303778b76 SHA512 bf8c4fe486f5e965b793d8526dd1fc5c8905c4b065a1abe52ec8e41ebbe48292315a7460dc56fb7a029b4673057f9da7e53854bb79bb54dd8a4378391efc24a2 WHIRLPOOL 3e131da888eff53fbfa6203ed363f34832c52fb0fafca9006dd1da956c89a76528dc9aaf255426a148497c55df74ccb72cf87e234f5c432c4e2c28a5dfd0a9a1 DIST lpeg-1.0.0.tar.gz 70267 SHA256 10190ae758a22a16415429a9eb70344cf29cbda738a6962a9f94a732340abf8e SHA512 a245d2e0b8604121d8b4466052ab5da4f2b1f81c1c4b2579d8d5498920fc351d46fe4159a0b5948d1b377ef9bda410c4bf40ffd228b9f26bf346dfba2a7b9fb7 WHIRLPOOL 808b1ddc61402c707a829641051c9321030573e85e863a6463bd8f114e89576dc7566585ae331a8af6d1f970c29b4256141df90fa5fe3616bea5691040262498 +DIST lpeg-1.0.1.tar.gz 71527 SHA256 62d9f7a9ea3c1f215c77e0cadd8534c6ad9af0fb711c3f89188a8891c72f026b SHA512 7b43fbee7eff443000986684bc56bba6d2796a31cf860740746c70e155bdea1b62a46b93f97e2747e3ef0f63e965148778ac2985d0f2d83e1e37ec4ebbabf4aa WHIRLPOOL a678ee2b2f934ebc32b19764703b14ec90d7440cd204fceae9ba89b8a2b0b89f9192a71548e7818b66e37f8bc916c051a360a848fcc645b7ab7265016a794020 diff --git a/dev-lua/lpeg/lpeg-1.0.1.ebuild b/dev-lua/lpeg/lpeg-1.0.1.ebuild new file mode 100644 index 000000000000..7353daf5efe7 --- /dev/null +++ b/dev-lua/lpeg/lpeg-1.0.1.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit flag-o-matic toolchain-funcs + +DESCRIPTION="Parsing Expression Grammars for Lua" +HOMEPAGE="http://www.inf.puc-rio.br/~roberto/lpeg/" +SRC_URI="http://www.inf.puc-rio.br/~roberto/${PN}/${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~arm ~hppa ~ppc ~x86" +IUSE="debug doc luajit" + +RDEPEND="!luajit? ( >=dev-lang/lua-5.1:= ) + luajit? ( dev-lang/luajit:2= )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +DOCS=( "HISTORY" ) +HTML_DOCS=( "lpeg.html" "re.html" ) +PATCHES=( "${FILESDIR}"/${PN}-0.12.1-makefile.patch ) + +src_prepare() { + default + use debug && append-cflags -DLPEG_DEBUG +} + +src_compile() { + emake CC="$(tc-getCC)" \ + LUADIR="$($(tc-getPKG_CONFIG) --variable includedir $(usex luajit 'luajit' 'lua'))" +} + +src_test() { + $(usex luajit 'luajit' 'lua') test.lua || die +} + +src_install() { + local instdir + instdir="$($(tc-getPKG_CONFIG) --variable INSTALL_CMOD $(usex luajit 'luajit' 'lua'))" + exeinto "${instdir#${EPREFIX}}" + doexe lpeg.so + instdir="$($(tc-getPKG_CONFIG) --variable INSTALL_LMOD $(usex luajit 'luajit' 'lua'))" + insinto "${instdir#${EPREFIX}}" + doins re.lua + + use doc && einstalldocs +} diff --git a/dev-qt/qtwebengine/files/qtwebengine-5.7.1-fix-audio-detection.patch b/dev-qt/qtwebengine/files/qtwebengine-5.7.1-fix-audio-detection.patch new file mode 100644 index 000000000000..597554e685cd --- /dev/null +++ b/dev-qt/qtwebengine/files/qtwebengine-5.7.1-fix-audio-detection.patch @@ -0,0 +1,23 @@ +# dev-qt/qtwebengine: Fix detecting audio backends. + +# The upstream change doesn't really work for us, so we'll make +# it work with us. +# Gentoo-Bug: https://bugs.gentoo.org/603498 + +--- /src/core/config/linux.pri 2016-12-23 00:05:41.057955774 +0200 ++++ /src/core/config/linux.pri 2016-12-23 00:09:39.000573909 +0200 +@@ -35,12 +35,12 @@ + contains(QT_CONFIG, system-png): GYP_CONFIG += use_system_libpng=1 + contains(QT_CONFIG, system-jpeg): GYP_CONFIG += use_system_libjpeg=1 + contains(QT_CONFIG, system-harfbuzz): GYP_CONFIG += use_system_harfbuzz=1 +-contains(QT_CONFIG, pulseaudio) { ++use?(pulseaudio) { + GYP_CONFIG += use_pulseaudio=1 + } else { + GYP_CONFIG += use_pulseaudio=0 + } +-contains(QT_CONFIG, alsa) { ++use?(alsa) { + GYP_CONFIG += use_alsa=1 + } else { + GYP_CONFIG += use_alsa=0 diff --git a/dev-qt/qtwebengine/qtwebengine-5.7.1-r1.ebuild b/dev-qt/qtwebengine/qtwebengine-5.7.1-r1.ebuild new file mode 100644 index 000000000000..ee0986808cb7 --- /dev/null +++ b/dev-qt/qtwebengine/qtwebengine-5.7.1-r1.ebuild @@ -0,0 +1,117 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 +PYTHON_COMPAT=( python2_7 ) +inherit pax-utils python-any-r1 qt5-build + +DESCRIPTION="Library for rendering dynamic web content in Qt5 C++ and QML applications" + +if [[ ${QT5_BUILD_TYPE} == release ]]; then + KEYWORDS="~amd64 ~x86" +fi + +IUSE="alsa bindist geolocation pax_kernel pulseaudio +system-ffmpeg +system-icu widgets" + +RDEPEND=" + app-arch/snappy + dev-libs/glib:2 + dev-libs/nspr + dev-libs/nss + ~dev-qt/qtcore-${PV} + ~dev-qt/qtdeclarative-${PV} + ~dev-qt/qtgui-${PV} + ~dev-qt/qtnetwork-${PV} + ~dev-qt/qtwebchannel-${PV}[qml] + dev-libs/expat + dev-libs/jsoncpp:= + dev-libs/libevent:= + dev-libs/libxml2 + dev-libs/libxslt + dev-libs/protobuf:= + media-libs/flac + media-libs/fontconfig + media-libs/freetype + media-libs/harfbuzz:= + media-libs/libpng:0= + >=media-libs/libvpx-1.5:=[svc] + media-libs/libwebp:= + media-libs/mesa + media-libs/opus + media-libs/speex + net-libs/libsrtp:0= + sys-apps/dbus + sys-apps/pciutils + sys-libs/libcap + sys-libs/zlib[minizip] + x11-libs/libdrm + x11-libs/libX11 + x11-libs/libXcomposite + x11-libs/libXcursor + x11-libs/libXdamage + x11-libs/libXext + x11-libs/libXfixes + x11-libs/libXi + x11-libs/libXrandr + x11-libs/libXrender + x11-libs/libXScrnSaver + x11-libs/libXtst + alsa? ( media-libs/alsa-lib ) + geolocation? ( ~dev-qt/qtpositioning-${PV} ) + pulseaudio? ( media-sound/pulseaudio:= ) + system-ffmpeg? ( media-video/ffmpeg:0= ) + system-icu? ( dev-libs/icu:= ) + widgets? ( ~dev-qt/qtwidgets-${PV} ) +" +DEPEND="${RDEPEND} + ${PYTHON_DEPS} + dev-util/gperf + dev-util/ninja + dev-util/re2c + sys-devel/bison + pax_kernel? ( sys-apps/elfix ) +" + +PATCHES=( + "${FILESDIR}/${PN}-5.7.1-fix-audio-detection.patch" + "${FILESDIR}/${PN}-5.7.0-fix-system-ffmpeg.patch" + "${FILESDIR}/${PN}-5.7.0-icu58.patch" + "${FILESDIR}/${PN}-5.7.0-undef-madv_free.patch" +) + +src_prepare() { + use pax_kernel && PATCHES+=( "${FILESDIR}/${PN}-paxmark-mksnapshot.patch" ) + + if use system-icu; then + # ensure build against system headers - bug #601264 + rm -r src/3rdparty/chromium/third_party/icu/source || die + fi + + qt_use_disable_mod geolocation positioning \ + src/core/core_common.pri \ + src/core/core_gyp_generator.pro + + qt_use_disable_mod widgets widgets src/src.pro + + qt5-build_src_prepare +} + +src_configure() { + export NINJA_PATH=/usr/bin/ninja + + local myqmakeargs=( + $(usex alsa 'WEBENGINE_CONFIG+=use_alsa' '') + $(usex bindist '' 'WEBENGINE_CONFIG+=use_proprietary_codecs') + $(usex pulseaudio 'WEBENGINE_CONFIG+=use_pulseaudio' '') + $(usex system-ffmpeg 'WEBENGINE_CONFIG+=use_system_ffmpeg' '') + $(usex system-icu 'WEBENGINE_CONFIG+=use_system_icu' '') + ) + qt5-build_src_configure +} + +src_install() { + qt5-build_src_install + + pax-mark m "${D%/}${QT5_LIBEXECDIR}"/QtWebEngineProcess +} diff --git a/dev-ros/python_qt_binding/Manifest b/dev-ros/python_qt_binding/Manifest index d8224db492b9..a586771ee47c 100644 --- a/dev-ros/python_qt_binding/Manifest +++ b/dev-ros/python_qt_binding/Manifest @@ -1 +1,2 @@ DIST python_qt_binding-0.3.1.tar.gz 11955 SHA256 c9f056da7b805279820128e4a7e88e771b8cc8a845e72013bfd0f86b5749cb9f SHA512 2dcf751ac7bd859cf42322f458893d46678a432b212c523e108b664ac10ffce0043dc266e53947b101f9741359cc9c2f82d99c20674628c83d55719b8a546f77 WHIRLPOOL 287a053e1d58d58065587e221b7829221ee0c4cc6e7e38ad581eb51eb11dd82077d74e58ad357be4ca3812b4818daee50e33afdcca08076d6ae711a98063df63 +DIST python_qt_binding-0.3.2.tar.gz 12047 SHA256 1ef3a85cc304028711f35de983c78fdc1f78d476e1239519bd8883cbe99aba16 SHA512 777d7ba00652d34994648615125f6c426170a1723570de35b9e5a060d0f077b563a57c9b0cbe7bd85a7ed2f5f011797e9102918a27df4f0096831cce0bb80304 WHIRLPOOL 3490e9229d675a8a753363a91fc785ab255385b358c7829824d50abae389b214aa88f49970d60a7bbda255c430fd8202b63c7586f2342808c85b8fe55bc8edae diff --git a/dev-ros/python_qt_binding/python_qt_binding-0.3.2.ebuild b/dev-ros/python_qt_binding/python_qt_binding-0.3.2.ebuild new file mode 100644 index 000000000000..453288d17366 --- /dev/null +++ b/dev-ros/python_qt_binding/python_qt_binding-0.3.2.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +ROS_REPO_URI="https://github.com/ros-visualization/python_qt_binding" +KEYWORDS="~amd64" +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit ros-catkin + +DESCRIPTION="Infrastructure for an integrated graphical user interface based on Qt" +LICENSE="BSD" +SLOT="0" +IUSE="" + +RDEPEND=" + dev-python/PyQt5[gui,widgets,${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND}" diff --git a/dev-ruby/nio4r/Manifest b/dev-ruby/nio4r/Manifest index 9f5635c0a1f3..ec854120a496 100644 --- a/dev-ruby/nio4r/Manifest +++ b/dev-ruby/nio4r/Manifest @@ -1 +1,2 @@ DIST nio4r-1.2.1.gem 94208 SHA256 0a5a93676c7c116c51f00366800a7c039d67393dadb4b873059375d7cfa9b6a9 SHA512 3136863955bd6f4d489955bae9baf2fb527447c0e71dade1a05402f3e7c8570bf1dd9b8335d70d7303ec4df0a236b13e4ede74ce9154be00a108afcd7c6b7f40 WHIRLPOOL acb063c6a5e9cb4df6096ecd5bebc9e5d1b2968d35899f05b7110b0037bb37862942e01c44fcbd2731bcb492f9e7fd9acd70a23aee375dae93406688ac7ff593 +DIST nio4r-2.0.0.gem 99840 SHA256 2ecc70fe1ae4c8a4638109475dbb6401249facdae5b4be12db931152864844cd SHA512 347afee015e673c8c878799b50affe155ad880608309162de2b4437c051a60feb902b44bc9f5ca5af6fb9e2f84a067410596eac68b1a39374a167205dadc1444 WHIRLPOOL fec5bdd5e2c1ffee8a73116fdf41a7716d72d7a60ed32b52647ee91f3457e1cd77bf39e2a094f2d1939c23d99a3e27294c93e94c0db272874a55573178e1ca14 diff --git a/dev-ruby/nio4r/nio4r-2.0.0.ebuild b/dev-ruby/nio4r/nio4r-2.0.0.ebuild new file mode 100644 index 000000000000..fdf9a8ab13f7 --- /dev/null +++ b/dev-ruby/nio4r/nio4r-2.0.0.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +USE_RUBY="ruby21 ruby22 ruby23" + +RUBY_FAKEGEM_RECIPE_TEST="rspec3" + +RUBY_FAKEGEM_TASK_DOC="" +RUBY_FAKEGEM_EXTRADOC="CHANGES.md README.md" + +inherit ruby-fakegem + +DESCRIPTION="A high performance selector API for monitoring IO objects" +HOMEPAGE="https://github.com/celluloid/nio4r" + +LICENSE="MIT" +SLOT="2" +KEYWORDS="~amd64 ~arm ~ppc64 ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris" +IUSE="" + +# Note that nio4r bundles a patched copy of libev, and without these +# patches the tests fail: https://github.com/celluloid/nio4r/issues/15 + +all_ruby_prepare() { + sed -i -e '/[Cc]overalls/d' -e '/[Bb]undler/d' spec/spec_helper.rb || die + sed -e '/extension/ s:^:#:' -i Rakefile || die +} + +each_ruby_configure() { + ${RUBY} -Cext/${PN} extconf.rb || die +} + +each_ruby_compile() { + emake V=1 -Cext/${PN} + cp ext/${PN}/*$(get_modname) lib/ || die +} diff --git a/dev-ruby/power_assert/Manifest b/dev-ruby/power_assert/Manifest index dfe9b9afa563..94225d22c7cb 100644 --- a/dev-ruby/power_assert/Manifest +++ b/dev-ruby/power_assert/Manifest @@ -1,2 +1,3 @@ DIST power_assert-0.3.1.gem 14336 SHA256 f89ba9cc1fa9d684b8f9f1221e94a8472a89355b5a6cb40d99fc863cbb4bec3a SHA512 0523c9c2f45ae60e93b491bed8ae3ff3bd83cfdf8c23d784ce19f87a52d90b94095d3e5ca38fbc2e4917a8895309194e06ec519099b69096bef69a4d9466da64 WHIRLPOOL 7a378ee685ab2b5d47885285b6c2b5377dae60f63fe23ac1ac2f776e6acb7b80445ca033a8ba0c4df6bb56eebecb084d9cede10d90d6f63750aea6e9d5d80ed0 DIST power_assert-0.4.1.gem 14848 SHA256 8d2bf80d28a9f8bc4c6c7eb162780971896d0a27fa0540093a0f125157aa6b7f SHA512 18b55e841499be7827cdfbcca41fe786a4fd7d0ff2aed049c289b917ab4487e035cc4321f39ccab2dcc5967c668df36f0cfb96d8e799793c9cb8dfbf9b3622c9 WHIRLPOOL 8609198b6c7453f11b51b651d9911d8118cf3ecf6af1f05d721c7e33f06620a030538de11c39816435810e4c7c1993148a287cdaa1e48b86456edae07fe6c4e6 +DIST power_assert-1.0.1.tar.gz 15376 SHA256 58681a9b3166b9f7d2ee41554a3d5363b5a6f64f5262f703fce5285c4ebd58c7 SHA512 69370f69e7289c36a8d16a433e3629d25aa99049eec9b737af56d56c07ed5c4e72692c9fdc544cc76e7008babb2c7fd68c796e27e300268cd75b12cabe1d7403 WHIRLPOOL 0a2be78ba7d5eeef66995d3c32b3b99ce91b624cbee55e0cb78b3272816d9d3faa21cc36e597d541666e496381e663d458b497a8e2aab0ded8526a03aaf27aad diff --git a/dev-ruby/power_assert/power_assert-1.0.1.ebuild b/dev-ruby/power_assert/power_assert-1.0.1.ebuild new file mode 100644 index 000000000000..e62f5b45717d --- /dev/null +++ b/dev-ruby/power_assert/power_assert-1.0.1.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 +USE_RUBY="ruby20 ruby21 ruby22 ruby23 ruby24" + +RUBY_FAKEGEM_RECIPE_DOC="rdoc" +RUBY_FAKEGEM_EXTRADOC="README.rdoc" + +inherit ruby-fakegem + +DESCRIPTION="Shows each value of variables and method calls in the expression" +HOMEPAGE="https://github.com/k-tsj/power_assert" +SRC_URI="https://github.com/k-tsj/power_assert/archive/v${PV}.tar.gz -> ${P}.tar.gz" +LICENSE="|| ( Ruby BSD-2 )" + +KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~amd64-linux ~x86-fbsd ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris" + +SLOT="0" +IUSE="" + +ruby_add_bdepend "test? ( dev-ruby/test-unit )" + +all_ruby_prepare() { + sed -i -e '/bundler/I s:^:#:' Rakefile test/test_helper.rb || die + sed -i -e '1igem "test-unit"' \ + -e '/byebug/ s:^:#:' test/test_helper.rb || die + + # Avoid circular dependency on byebug when bootstrapping ruby + sed -i -e '/byebug/ s:^:#:' -e '/test_core_ext_helper/ s:^:#:' test/test_helper.rb || die + rm test/test_core_ext_helper.rb test/trace_test.rb || die + + # Avoid circular dependency on pry when bootstrapping ruby + sed -i -e '/pry/ s:^:#:' -e '/test_colorized_pp/,/^ end/ s:^:#:' test/block_test.rb || die +} diff --git a/dev-ruby/simplecov/Manifest b/dev-ruby/simplecov/Manifest index 3ca9b1150888..4b288f544019 100644 --- a/dev-ruby/simplecov/Manifest +++ b/dev-ruby/simplecov/Manifest @@ -1,2 +1,3 @@ DIST simplecov-0.11.2.gem 54784 SHA256 82e330864f84955d6c443e7d233474e91731b2850ba35b21997a8aad798712dc SHA512 c93ea47a6e3c9b62fd83adf1e480da66fc82ce50106b1749a9d94b7e90ef2aaf34c14c67b1ac12268765695da62895b12f060051a05c26dac41ed7df7575e3f3 WHIRLPOOL 34b891f608fcf3c2d021a96952be0f19c45b643ee8b5d58dfb102f8211a1fbd07e6a8a54a296a8ef0ae39f22bfcf797aad9ea979e1a9d0654335c272cec33be2 DIST simplecov-0.12.0.gem 54784 SHA256 7de16175818d86c71b75deb81f141eaf1ce231244a90135815f50b6c5df6d039 SHA512 759a7aae2552deb5f1e213c7547f688a34d56e7baa9ce914b25ae8e43515b09e90d15ce9de5b651bc70a439beed4041f0c8c7c3dc0113dedfb7bcb80dacf9edd WHIRLPOOL 08a3186c543ffbb274ee96690f4bfd5f18f4c2b4bd4ee4eca71369ab027c557adbea7c5124ce72b7ceedee851149595a7e0b4549deff55df91ac14049046a5cd +DIST simplecov-0.13.0.gem 55808 SHA256 c78227427eb6b40499d657f2996ec6841f5135468693e55e3d2c976c706f86e4 SHA512 9cc7f88e1a8b793d69e4fc92610805202d68f1c883cdddc7ae9426d250ebd68d72b61879801897748e26750db04f51d3dd0332fe807dab6ec0b2c982b8693d69 WHIRLPOOL c7a6a3168ce0c5712462b2800c888fd8ff62ba6fc8ae89cd9c0bdab397364be00706de7495767c363a7b660d11e03cef8146377f7291297a7df111cb712b416a diff --git a/dev-ruby/simplecov/simplecov-0.13.0.ebuild b/dev-ruby/simplecov/simplecov-0.13.0.ebuild new file mode 100644 index 000000000000..971b1bbbdbb8 --- /dev/null +++ b/dev-ruby/simplecov/simplecov-0.13.0.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 +USE_RUBY="ruby21 ruby22 ruby23" + +RUBY_FAKEGEM_EXTRADOC="CHANGELOG.md README.md" + +RUBY_FAKEGEM_DOCDIR="doc" +RUBY_FAKEGEM_TASK_DOC="" + +inherit ruby-fakegem + +DESCRIPTION="Code coverage with a configuration library and merging across test suites" +HOMEPAGE="https://www.ruby-toolbox.com/projects/simplecov https://github.com/colszowka/simplecov" +LICENSE="MIT" + +KEYWORDS="~amd64" +SLOT="0.8" +IUSE="doc" + +ruby_add_rdepend ">=dev-ruby/json-1.8:0 =dev-ruby/docile-1.1.0" + +ruby_add_bdepend "test? ( + dev-ruby/rspec:3 + dev-ruby/test-unit:2 +)" + +# There are also cucumber tests that require poltergeist and unpackaged phantomjs gem. + +all_ruby_prepare() { + sed -i -e '/[Bb]undler/ s:^:#:' spec/helper.rb features/support/env.rb || die +} + +each_ruby_test() { + RSPEC_VERSION=3 ruby-ng_rspec spec/*spec.rb || die + + #${RUBY} -S cucumber features || die +} diff --git a/dev-tex/latex2html/Manifest b/dev-tex/latex2html/Manifest index 8166f3e7cd95..b81d86c9bbc0 100644 --- a/dev-tex/latex2html/Manifest +++ b/dev-tex/latex2html/Manifest @@ -1,3 +1,4 @@ DIST latex2html-2008.tar.gz 1133054 SHA256 59456815a3984250c295d3d5c46b85646038db8db2735cdc0d3780cf4da337ad SHA512 e5a9d1700fcc45e6fcb7bae79e25acd52b7a84b70a75b3c7f1e746f65adbd48219a828420f6a7c437613d5c74dfb0405c91df01ac9c1535e9850f3a3e5c47f60 WHIRLPOOL 3d4dba64a2ce1b548749f5a5d489afba8694b2b6214dc5b7030820898d13a33dd708c751d2dc625a3d93930bcc0e483fa3e6736a2812c3baf395f70bb77404dc DIST latex2html-2015.tar.gz 1217699 SHA256 248cf84c70dd31221ddc69ef7ce0e720aadd26b572ee412827eae62f0eefb8dd SHA512 dd031944250efd28691edeba5e83b4c5c0deec3a2e7c2ab2a9bd285a911f6ab21a02cd0ef697bebc2c7c7c0ebd285493c1d6b01b0db9355fc7f3316a2af65e2c WHIRLPOOL 27e086e44ace2cae80d0b29390d3ba63f426c3facd8ac5e4573b580260a3e859c29bd0496ed0f864c0e2644ff0105e9b0cfeb45d9812c54b97f6386c5844b0c9 +DIST latex2html-2017.2.tar.gz 1131438 SHA256 4b8c21ef292817c85ba553f560129723bcae4ee9a6ec7a22ce2289329db7c1ef SHA512 0e1ab1b2005dc71988b1500884d7a13bfbdce73a62ef7f6cc6e83e29d776c98eb09cff3f8d0c162493586094c9ca6f07d47e98d2137f223f27044d03e9bb3473 WHIRLPOOL a0d6145cc104e70ec43097e0af527e18df98fe9f7c668f994c219d1548920d74347dc9de59728d702f207bebc42b267f8a18faa6f912363000d3807f23ab1560 DIST latex2html-match-multiline.patch.bz2 8147 SHA256 fa4c74b1e6ef3fc337485b7940922aaa1aed0c33a533e75f4a97503547f4570e SHA512 01ec0dd1705f030736432a7fa8bf99c83c9e4f01c9755319d36e65e18737361d23073277692a8c44af529a1c37caabcc9e720a4be57e64300f945060e88f6641 WHIRLPOOL d0f69d16060d9829cafdc266acdb50e2071cf742841e7fcce524d69268c51036665670c0e3111e83dea8271cb0032f2362686c976a8b2c9032b50125ab3a9b2c diff --git a/dev-tex/latex2html/files/latex2html-tests.patch b/dev-tex/latex2html/files/latex2html-tests.patch new file mode 100644 index 000000000000..1ada1a32bf00 --- /dev/null +++ b/dev-tex/latex2html/files/latex2html-tests.patch @@ -0,0 +1,26 @@ +Index: latex2html-2017.2/styles/frames.perl +=================================================================== +--- latex2html-2017.2.orig/styles/frames.perl ++++ latex2html-2017.2/styles/frames.perl +@@ -295,7 +295,7 @@ sub check_frame_colorset { + elsif ($reverse == 1) {$colorset="${which}_colorset_star"} + elsif ($reverse == 2) {$colorset="${which}_colorset_star_star"} + else {$colorset="${which}_colorset"} +- if (!(defined @$colorset)) ++ if (!(@$colorset)) + { print STDERR "\nframes for $which are not supported\n"; return($rest);} + local($frame_tmp)=$frame_data; + local($key, @values); +Index: latex2html-2017.2/styles/natbib.perl +=================================================================== +--- latex2html-2017.2.orig/styles/natbib.perl ++++ latex2html-2017.2/styles/natbib.perl +@@ -1451,7 +1451,7 @@ sub do_cmd_citestyle { + local($_) = @_; + s/$next_pair_pr_rx//o; + local($style)="citestyle_$2"; +- if (defined @$style) { ++ if (@$style) { + ($CITE_OPEN_DELIM, + $CITE_CLOSE_DELIM, + $CITE_ENUM, diff --git a/dev-tex/latex2html/latex2html-2017.2.ebuild b/dev-tex/latex2html/latex2html-2017.2.ebuild new file mode 100644 index 000000000000..4ec817e51e0b --- /dev/null +++ b/dev-tex/latex2html/latex2html-2017.2.ebuild @@ -0,0 +1,77 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="Convertor written in Perl that converts LATEX documents to HTML" +HOMEPAGE="http://www.latex2html.org/" +SRC_URI="http://mirrors.ctan.org/support/latex2html/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" +IUSE="gif png" + +DEPEND="app-text/ghostscript-gpl + virtual/latex-base + media-libs/netpbm + dev-lang/perl + gif? ( media-libs/giflib ) + png? ( media-libs/libpng:0 )" +RDEPEND="${DEPEND}" + +PATCHES=( "${FILESDIR}/${PN}"-{destdir,tests}.patch ) + +src_prepare() { + default + + sed -i -e 's%@PERL@%'"${EPREFIX}"'/usr/bin/perl%g' wrapper/unix.pin || die +} + +src_configure() { + local myconf + + use gif || use png || myconf="${myconf} --disable-images" + + econf --libdir="${EPREFIX}"/usr/$(get_libdir)/latex2html \ + --shlibdir="${EPREFIX}"/usr/$(get_libdir)/latex2html \ + --enable-pk \ + --enable-eps \ + --enable-reverse \ + --enable-pipes \ + --enable-paths \ + --enable-wrapper \ + --with-texpath="${EPREFIX}"/usr/share/texmf-site/tex/latex/html \ + --without-mktexlsr \ + $(use_enable gif) \ + $(use_enable png) \ + ${myconf} +} + +src_install() { + emake DESTDIR="${D}" install + + # make /usr/share/latex2html sticky + keepdir /usr/share/latex2html + + # clean the perl scripts up to remove references to the sandbox + local dir="${ED}/usr/$(get_libdir)/latex2html" + if use png || use gif; then + # pstoimg isn't built unless gif or png useflags are enabled + sed -i -e "s:${T}:/tmp:g" "${dir}"/pstoimg.pl || die + fi + sed -i -e "s:${S}::g" "${dir}"/latex2html.pl || die + sed -i -e "s:${T}:/tmp:g" "${dir}"/cfgcache.pm || die + sed -i -e "s:${T}:/tmp:g" "${dir}"/l2hconf.pm || die + + dodoc BUGS Changes FAQ MANIFEST README.md TODO +} + +pkg_postinst() { + "${EROOT}"/usr/bin/mktexlsr +} + +pkg_postrm() { + "${EROOT}"/usr/bin/mktexlsr +} diff --git a/dev-tex/latexmk/Manifest b/dev-tex/latexmk/Manifest index 648076988ae8..395518a50bf0 100644 --- a/dev-tex/latexmk/Manifest +++ b/dev-tex/latexmk/Manifest @@ -4,3 +4,4 @@ DIST latexmk-443a.zip 434070 SHA256 e410d295c0a47327b953ece5b582c294359bdf89138e DIST latexmk-444.zip 446413 SHA256 fc32d6f4023a0a22102b785adb487a0b4c5605aeb35c8d45464898a9d4bee3b3 SHA512 9a3237e4a31ce3ee0002370b16226909ee5389fdd081b0a3d37dce2f960bb2ea64eb4bd3e262f2a87766cc8401bf749d98267e6659ea0ce8c334db9e156d2128 WHIRLPOOL 138db1cd85aacd615bb5f2ad3175a0c862dd8500db69e87c477908ea912e261df0195085a0a603ed73fbcc7526787d6f3b9d366ffa1a0a08f97654ff8679b9ea DIST latexmk-445.zip 447045 SHA256 0f1894c799694b34e936623eea886865e2d19d99f988d4e0e184499016c43851 SHA512 1441d4d1c0112f3cf64067ed8b661554b0ad6fcbb84316d9cbb84c84220d7f99fcbcad27f8686946aaccf6ba184471d5ea774e594e2f3a6632fcdca6ca8e63b3 WHIRLPOOL 85272d3c2044a74616b3f4473840e3745b1a4d39b6e6f2fc6120a88a3615e020ea9e1f0736b84f3d34f81c09e0daea345040fbb9d5a679d99578e3a9a3542279 DIST latexmk-448.zip 452245 SHA256 8fd0f79b33ab061c8323d357a1dae30b7cb1cf892ca348a6520c8b016e685808 SHA512 cfa5c4a95a902baf1d4c56303500e5d54369b68abaa52e904a62bbeaeeb356bfe711ea040f0f02067a40e3fc88a12b46136a3a6d9708a34c177a4bae0bb6b986 WHIRLPOOL 954ed9c803c48d6088c7bb202860dd3b9138c2278d9b924c72a96413f7aca2b829f07dd725be098fb587d670d218d4b6ee21a3031ab3f3d18531f9106befac21 +DIST latexmk-452c.zip 391327 SHA256 7a8fd50e0bd46c8705aa4e0fcbc36d01d528cc92a96d71e1c00e1fb2e6484db2 SHA512 164837066a285e3ffca938eb735c35b253b2dba2addf1ae2b2db5155b0586f6f4e626faf86eb630f97ce296c03c5c1c2f0f3c61445a75b9132aff009d683aeba WHIRLPOOL cf3c1975c9f934da625da8742a9fe2a2af78062461477c6d20ec33a12e9f4e0e46354d303a1fe3692eb4310832dc2b781a23dc1e07686fc47f1292202ccb8de5 diff --git a/dev-tex/latexmk/latexmk-452c.ebuild b/dev-tex/latexmk/latexmk-452c.ebuild new file mode 100644 index 000000000000..a10c1d1adf39 --- /dev/null +++ b/dev-tex/latexmk/latexmk-452c.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit bash-completion-r1 + +DESCRIPTION="Perl script for automatically building LaTeX documents" +HOMEPAGE="http://www.phys.psu.edu/~collins/software/latexmk/" +SRC_URI="http://www.phys.psu.edu/~collins/software/latexmk/${P}.zip" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~ppc-macos ~x64-macos ~x86-macos" + +RDEPEND="virtual/latex-base + dev-lang/perl" +DEPEND="${RDEPEND} + app-arch/unzip" + +S="${WORKDIR}/${PN}" + +src_install() { + newbin latexmk.pl latexmk + doman latexmk.1 + dodoc CHANGES README latexmk.pdf latexmk.txt + dodoc -r example_rcfiles extra-scripts + newbashcomp "${FILESDIR}"/completion.bash-2 ${PN} +} diff --git a/dev-util/cmdtest/Manifest b/dev-util/cmdtest/Manifest index f03b90f6aa86..92ebd751d3cf 100644 --- a/dev-util/cmdtest/Manifest +++ b/dev-util/cmdtest/Manifest @@ -1,2 +1,3 @@ DIST cmdtest_0.16.orig.tar.xz 32960 SHA256 3cd0e18f638b78a76f78e84d48996ee7436f598832fc3e28380ac03db35afec6 SHA512 5be73dc1d71706ccf220dc91944d353e4745cd214b54977f0a8093bd540114747a78cf9f65c9ed926bcc0749839e3d9252a23d1ff3c1d05fbe87eceb4915bc26 WHIRLPOOL 4028340a9be5177a5b7ea2c805ca3df009719582d414e175734e53327212b2d4eb32c33834dcc61a0a38ef239249a55ebb7206201ca1142b953c1390455c2b6b DIST cmdtest_0.18.orig.tar.xz 33156 SHA256 b68addc8a21298a17a9ac02b439abf9a07bcf9916f3ce41804a2348526110e19 SHA512 b5eb9d58401a93fa31cded35338e734a50cacc6af93423b020912a4b1c63d7bf9e35c588ad47678a0395aca6d4dfda76af7c92fbaf41884d542055a04f6406b7 WHIRLPOOL 2d03c4f554efa6bb8c714976af60dbc559bad17dcfd1dd65bfc491a1b16983a01ab1fb17d2e53a67bb29dc79f992de363288f473dc09c54f3162ae8ce9f2f975 +DIST cmdtest_0.27.orig.tar.xz 37088 SHA256 3e038bd0065ac366ef16aa1e9362acd24d2318d967ec853e19be12785f4b723e SHA512 6c8aae6b60863d75bd1f57bd45589f3b201c7d2907fcbcc7c2a8aa2fe3bf766ab4d9688998046e36c76037e7d3fd2559c26c316216941a55a121f4a87299928f WHIRLPOOL 44f3b0b0be5f4bad4548592910a370153186c31ed794fc3522f65c8db04b376040ba145bc391be05315c8e794e2dbb3739e8d32474add6cc91659c76fb3fea65 diff --git a/dev-util/cmdtest/cmdtest-0.27.ebuild b/dev-util/cmdtest/cmdtest-0.27.ebuild new file mode 100644 index 000000000000..654312bcc423 --- /dev/null +++ b/dev-util/cmdtest/cmdtest-0.27.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="black box tests Unix command line tools" +HOMEPAGE="http://liw.fi/cmdtest/" +SRC_URI="http://code.liw.fi/debian/pool/main/c/${PN}/${PN}_${PV}.orig.tar.xz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND=" + ${PYTHON_DEPS} + dev-python/cliapp[${PYTHON_USEDEP}] + dev-python/ttystatus[${PYTHON_USEDEP}] +" + +src_compile() { + addwrite /proc/self/comm + distutils-r1_src_compile +} diff --git a/mail-mta/exim/Manifest b/mail-mta/exim/Manifest index fe5d02e89047..7167bd64fc77 100644 --- a/mail-mta/exim/Manifest +++ b/mail-mta/exim/Manifest @@ -1,3 +1,5 @@ DIST exim-4.88.tar.bz2 1824610 SHA256 119d5fd7e31fc224e84dfa458fe182f200856bae7adf852a8287c242161f8a2d SHA512 ea094bf703628c201de119fc5f09539475e52158e935f8f2a9e4138c4a1bfe885017145c3cc5e22aa9087b195091955c69385ebf1ea0baec64ed5c1b8e3b1caf WHIRLPOOL d2d8c404217fcc5bbc7bc18500456f2709a099b0a31d4930343b836c35c62e3914fa1c686ea7d9ba5eea95f0caab13c3b76c1508eda74cb75dabb0d61472428e +DIST exim-4.89_RC1.tar.bz2 1443535 SHA256 4e64927665c83aa9d18b1edc3cc73b1113c886925f71bd72eb3d598eb72ad573 SHA512 715e996eea555192ca847447e4e900df576e5fbaf523af5d55de20c5b762a9292aecbc4944e0764605f956fef8cf58301a59cb06560909d412fcc65bb49e0d0d WHIRLPOOL b83978375e7869d270a1ea4fa4bc81fa87274abb73de5c43e30c377ba71274629510594de477246901ecacef2533312fd0e90b8809c9c0f411b32b1c944cf9be DIST exim-pdf-4.88.tar.bz2 1922494 SHA256 33736fafb45c5922fcbc0def7626f46cb74927987b78943aa26949ef30789574 SHA512 8c4f580fa319c0285bcb49056ecd72b056cbbfa287a15a4d856965b4218469c85607ec7321ae0f2ba3be868f05a70a7fb8a77d5836a574417e6bffc64720bee5 WHIRLPOOL 7e3e65c58cc9a313d3440de6b79ed4f113ea265e39201aa2d36c091037c2b20718bd49f04e99f2aa029a20d238cd21178762e2ba6b470596309e83fb3ffc542b +DIST exim-pdf-4.89_RC1.tar.bz2 1923715 SHA256 83e3ed3bd2ccf460c629ed2967148be03d0bdef408d9908be90a78cb86b572c9 SHA512 e858e10a140b6c389f2c51c580ea5e31897297ef5822f9191d2f3315fb8805b77b525a29aff4bccaca6c92be06d958f9b9a239afa7623193e0340c08af730102 WHIRLPOOL b904c0bc4f54de58d03e1bfde854be55f5b68c83d7b3aea56f1b4f29cd857e63e54348b46c3d47659ca75ce83671f2726d83d5b67cfe7c5cc90ccede8c7238ec DIST system_filter.exim.gz 3075 SHA256 3a3471b486a09e0a0153f7b520e1eaf26d21b97d73ea8348bdc593c00eb1e437 SHA512 cb358d3ce2499a0bb5920d962a06f2af8486e55ec90c8c928bd8e3aefb279aa57f5f960d5adfcef68bd94110b405eaa144e9629cfe6014a529c79c544600bbf3 WHIRLPOOL ce68d9c18b24eca3ef97ea810964cc1ada5f85b795a7c432ad39b5788188a16419101c92fb52b418738d760e1d658f7a41485e5561079a667d84d276c71be5a4 diff --git a/mail-mta/exim/exim-4.89_rc1.ebuild b/mail-mta/exim/exim-4.89_rc1.ebuild new file mode 100644 index 000000000000..5deb3a88e342 --- /dev/null +++ b/mail-mta/exim/exim-4.89_rc1.ebuild @@ -0,0 +1,529 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="6" + +inherit eutils toolchain-funcs multilib pam systemd + +IUSE="dane dcc +dkim dlfunc dmarc +dnsdb doc dovecot-sasl dsn exiscan-acl gnutls ipv6 ldap libressl lmtp maildir mbx mysql nis pam perl pkcs11 postgres +prdr proxy radius redis sasl selinux spf sqlite srs ssl syslog tcpd tpda X elibc_glibc" +REQUIRED_USE=" + dane? ( !gnutls ) + dmarc? ( spf dkim ) + pkcs11? ( gnutls ) + spf? ( exiscan-acl ) + srs? ( exiscan-acl ) +" + +COMM_URI="ftp://ftp.exim.org/pub/exim/exim4$([[ ${PV} == *_rc* ]] && echo /test)" + +DESCRIPTION="A highly configurable, drop-in replacement for sendmail" +SRC_URI="${COMM_URI}/${P//rc/RC}.tar.bz2 + mirror://gentoo/system_filter.exim.gz + doc? ( ${COMM_URI}/${PN}-pdf-${PV//rc/RC}.tar.bz2 )" +HOMEPAGE="http://www.exim.org/" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~x86-solaris" + +COMMON_DEPEND=">=sys-apps/sed-4.0.5 + >=sys-libs/db-3.2:= + dev-libs/libpcre + perl? ( dev-lang/perl:= ) + pam? ( virtual/pam ) + tcpd? ( sys-apps/tcp-wrappers ) + ssl? ( + !libressl? ( dev-libs/openssl:0= ) + libressl? ( dev-libs/libressl:= ) + ) + gnutls? ( net-libs/gnutls[pkcs11?] + dev-libs/libtasn1 ) + ldap? ( >=net-nds/openldap-2.0.7 ) + nis? ( elibc_glibc? ( || ( + =sys-libs/glibc-2.23[rpc] + ) ) ) + mysql? ( virtual/libmysqlclient ) + postgres? ( dev-db/postgresql:= ) + sasl? ( >=dev-libs/cyrus-sasl-2.1.26-r2 ) + redis? ( dev-libs/hiredis ) + spf? ( >=mail-filter/libspf2-1.2.5-r1 ) + dmarc? ( mail-filter/opendmarc ) + srs? ( mail-filter/libsrs_alt ) + X? ( x11-proto/xproto + x11-libs/libX11 + x11-libs/libXmu + x11-libs/libXt + x11-libs/libXaw + ) + sqlite? ( dev-db/sqlite ) + radius? ( net-dialup/freeradius-client ) + virtual/libiconv + " + # added X check for #57206 +DEPEND="${COMMON_DEPEND} + virtual/pkgconfig" +RDEPEND="${COMMON_DEPEND} + !mail-mta/courier + !mail-mta/esmtp + !mail-mta/mini-qmail + !=mail-mta/msmtp-1.4.19-r1[mta] + !mail-mta/netqmail + !mail-mta/nullmailer + !mail-mta/postfix + !mail-mta/qmail-ldap + !mail-mta/sendmail + !mail-mta/opensmtpd + !=mail-mta/ssmtp-2.64-r2[mta] + !net-mail/mailwrapper + >=net-mail/mailbase-0.00-r5 + virtual/logger + dcc? ( mail-filter/dcc ) + selinux? ( sec-policy/selinux-exim ) + " + +S=${WORKDIR}/${P//rc/RC} + +src_prepare() { + epatch "${FILESDIR}"/exim-4.14-tail.patch + epatch "${FILESDIR}"/exim-4.74-localscan_dlopen.patch + epatch "${FILESDIR}"/exim-4.69-r1.27021.patch + epatch "${FILESDIR}"/exim-4.74-radius-db-ENV-clash.patch # 287426 + epatch "${FILESDIR}"/exim-4.82-makefile-freebsd.patch # 235785 + epatch "${FILESDIR}"/exim-4.88-as-needed-ldflags.patch # 352265, 391279 + epatch "${FILESDIR}"/exim-4.76-crosscompile.patch # 266591 + + if use maildir ; then + epatch "${FILESDIR}"/exim-4.20-maildir.patch + else + epatch "${FILESDIR}"/exim-4.80-spool-mail-group.patch # 438606 + fi + + eapply_user + + # user Exim believes it should be + MAILUSER=mail + MAILGROUP=mail + if use prefix && [[ ${EUID} != 0 ]] ; then + MAILUSER=$(id -un) + MAILGROUP=$(id -gn) + fi +} + +src_configure() { + # general config and paths + + sed -i.orig \ + -e "/SYSTEM_ALIASES_FILE/s'SYSTEM_ALIASES_FILE'${EPREFIX}/etc/mail/aliases'" \ + "${S}"/src/configure.default || die + + sed -i -e 's/^buildname=.*/buildname=exim-gentoo/g' Makefile || die + + sed -e "48i\CFLAGS=${CFLAGS}" \ + -e "s:BIN_DIRECTORY=/usr/exim/bin:BIN_DIRECTORY=${EPREFIX}/usr/sbin:" \ + -e "s:EXIM_USER=:EXIM_USER=${MAILUSER}:" \ + -e "s:CONFIGURE_FILE=/usr/exim/configure:CONFIGURE_FILE=${EPREFIX}/etc/exim/exim.conf:" \ + -e "s:ZCAT_COMMAND=.*$:ZCAT_COMMAND=${EPREFIX}/bin/zcat:" \ + -e "s:COMPRESS_COMMAND=.*$:COMPRESS_COMMAND=${EPREFIX}/bin/gzip:" \ + src/EDITME > Local/Makefile + + if use elibc_musl; then + sed -e 's/^LIBS = -lnsl/LIBS =/g' \ + -i OS/Makefile-Linux + fi + + cd Local + + cat >> Makefile <<- EOC + INFO_DIRECTORY=${EPREFIX}/usr/share/info + PID_FILE_PATH=${EPREFIX}/run/exim.pid + SPOOL_DIRECTORY=${EPREFIX}/var/spool/exim + HAVE_ICONV=yes + EOC + + # if we use libiconv, now is the time to tell so + use !elibc_glibc && use !elibc_musl && echo "EXTRALIBS_EXIM=-liconv" >> Makefile + + # support for IPv6 + if use ipv6; then + cat >> Makefile <<- EOC + HAVE_IPV6=YES + EOC + fi + + # + # mail storage formats + + # mailstore is Exim's traditional storage format + cat >> Makefile <<- EOC + SUPPORT_MAILSTORE=yes + EOC + + # mbox + if use mbx; then + cat >> Makefile <<- EOC + SUPPORT_MBX=yes + EOC + fi + + # maildir + if use maildir; then + cat >> Makefile <<- EOC + SUPPORT_MAILDIR=yes + EOC + fi + + # + # lookup methods + + # use the "native" interfaces to the DBM and CDB libraries, support + # passwd and directory lookups by default + cat >> Makefile <<- EOC + USE_DB=yes + DBMLIB=-ldb + LOOKUP_CDB=yes + LOOKUP_PASSWD=yes + LOOKUP_DSEARCH=yes + EOC + + if ! use dnsdb; then + # DNSDB lookup is enabled by default + sed -i "s:^LOOKUP_DNSDB=yes:# LOOKUP_DNSDB=yes:" Makefile + fi + + if use ldap; then + cat >> Makefile <<- EOC + LOOKUP_LDAP=yes + LDAP_LIB_TYPE=OPENLDAP2 + LOOKUP_INCLUDE += -I"${EROOT}"usr/include/ldap + LOOKUP_LIBS += -lldap -llber + EOC + fi + + if use mysql; then + cat >> Makefile <<- EOC + LOOKUP_MYSQL=yes + LOOKUP_INCLUDE += $(mysql_config --include) + LOOKUP_LIBS += $(mysql_config --libs) + EOC + fi + + if use nis; then + cat >> Makefile <<- EOC + LOOKUP_NIS=yes + LOOKUP_NISPLUS=yes + EOC + fi + + if use postgres; then + cat >> Makefile <<- EOC + LOOKUP_PGSQL=yes + LOOKUP_INCLUDE += -I$(pg_config --includedir) + LOOKUP_LIBS += -L$(pg_config --libdir) -lpq + EOC + fi + + if use sqlite; then + cat >> Makefile <<- EOC + LOOKUP_SQLITE=yes + LOOKUP_SQLITE_PC=sqlite3 + EOC + fi + + if use redis; then + cat >> Makefile <<- EOC + LOOKUP_REDIS=yes + LOOKUP_LIBS += -lhiredis + EOC + fi + + # + # Exim monitor, enabled by default, controlled via X USE-flag, + # disable if not requested, bug #46778 + if use X; then + cp ../exim_monitor/EDITME eximon.conf || die + else + sed -i -e '/^EXIM_MONITOR=/s/^/# /' Makefile + fi + + # + # features + + # content scanning support + if use exiscan-acl; then + cat >> Makefile <<- EOC + WITH_CONTENT_SCAN=yes + WITH_OLD_DEMIME=yes + EOC + fi + + # DomainKeys Identified Mail, RFC4871 + if ! use dkim; then + # DKIM is enabled by default + cat >> Makefile <<- EOC + DISABLE_DKIM=yes + EOC + fi + + # Per-Recipient-Data-Response + if ! use prdr; then + # PRDR is enabled by default + cat >> Makefile <<- EOC + DISABLE_PRDR=yes + EOC + fi + + # log to syslog + if use syslog; then + sed -i "s:LOG_FILE_PATH=/var/log/exim/exim_%s.log:LOG_FILE_PATH=syslog:" Makefile + cat >> Makefile <<- EOC + LOG_FILE_PATH=syslog + EOC + else + cat >> Makefile <<- EOC + LOG_FILE_PATH=${EPREFIX}/var/log/exim/exim_%s.log + EOC + fi + + # starttls support (ssl) + if use ssl; then + echo "SUPPORT_TLS=yes" >> Makefile + if use gnutls; then + echo "USE_GNUTLS=yes" >> Makefile + echo "USE_GNUTLS_PC=gnutls" >> Makefile + use pkcs11 || echo "AVOID_GNUTLS_PKCS11=yes" >> Makefile + else + echo "USE_OPENSSL_PC=openssl" >> Makefile + fi + fi + + # TCP wrappers + if use tcpd; then + cat >> Makefile <<- EOC + USE_TCP_WRAPPERS=yes + EXTRALIBS_EXIM += -lwrap + EOC + fi + + # Light Mail Transport Protocol + if use lmtp; then + cat >> Makefile <<- EOC + TRANSPORT_LMTP=yes + EOC + fi + + # embedded Perl + if use perl; then + cat >> Makefile <<- EOC + EXIM_PERL=perl.o + EOC + fi + + # dlfunc + if use dlfunc; then + cat >> Makefile <<- EOC + EXPAND_DLFUNC=yes + EOC + fi + + # + # experimental features + + # DANE + if use dane; then + cat >> Makefile <<- EOC + EXPERIMENTAL_DANE=yes + EOC + fi + + # Distributed Checksum Clearinghouse + if use dcc; then + echo "EXPERIMENTAL_DCC=yes">> Makefile + fi + + # Sender Policy Framework + if use spf; then + cat >> Makefile <<- EOC + EXPERIMENTAL_SPF=yes + EXTRALIBS_EXIM += -lspf2 + EOC + fi + + # Sender Rewriting Scheme + if use srs; then + cat >> Makefile <<- EOC + EXPERIMENTAL_SRS=yes + EXTRALIBS_EXIM += -lsrs_alt + EOC + fi + + # DMARC + if use dmarc; then + cat >> Makefile <<- EOC + EXPERIMENTAL_DMARC=yes + EXTRALIBS_EXIM += -lopendmarc + EOC + fi + + # Transport post-delivery actions + if use tpda; then + cat >> Makefile <<- EOC + EXPERIMENTAL_EVENT=yes + EOC + fi + + # Proxy Protocol + if use proxy; then + cat >> Makefile <<- EOC + EXPERIMENTAL_PROXY=yes + EOC + fi + + # Delivery Sender Notifications + if use dsn; then + cat >> Makefile <<- EOC + EXPERIMENTAL_DSN=yes + EOC + fi + + # + # authentication (SMTP AUTH) + + # standard bits + cat >> Makefile <<- EOC + AUTH_SPA=yes + AUTH_CRAM_MD5=yes + AUTH_PLAINTEXT=yes + EOC + + # Cyrus SASL + if use sasl; then + cat >> Makefile <<- EOC + CYRUS_SASLAUTHD_SOCKET=${EPREFIX}/run/saslauthd/mux + AUTH_CYRUS_SASL=yes + AUTH_LIBS += -lsasl2 + EOC + fi + + # Dovecot + if use dovecot-sasl; then + cat >> Makefile <<- EOC + AUTH_DOVECOT=yes + EOC + fi + + # Pluggable Authentication Modules + if use pam; then + cat >> Makefile <<- EOC + SUPPORT_PAM=yes + AUTH_LIBS += -lpam + EOC + fi + + # Radius + if use radius; then + cat >> Makefile <<- EOC + RADIUS_CONFIG_FILE=${EPREFIX}/etc/radiusclient/radiusclient.conf + RADIUS_LIB_TYPE=RADIUSCLIENTNEW + AUTH_LIBS += -lfreeradius-client + EOC + fi +} + +src_compile() { + emake CC="$(tc-getCC)" HOSTCC="$(tc-getCC $CBUILD)" \ + AR="$(tc-getAR) cq" RANLIB="$(tc-getRANLIB)" FULLECHO='' \ + || die "make failed" +} + +src_install () { + cd "${S}"/build-exim-gentoo || die + dosbin exim + if use X; then + dosbin eximon.bin + dosbin eximon + fi + fperms 4755 /usr/sbin/exim + + dosym exim /usr/sbin/sendmail + dosym exim /usr/sbin/rsmtp + dosym exim /usr/sbin/rmail + dosym /usr/sbin/exim /usr/bin/mailq + dosym /usr/sbin/exim /usr/bin/newaliases + dosym /usr/sbin/sendmail /usr/lib/sendmail + + for i in exicyclog exim_dbmbuild exim_dumpdb exim_fixdb exim_lock \ + exim_tidydb exinext exiwhat exigrep eximstats exiqsumm exiqgrep \ + convert4r3 convert4r4 exipick + do + dosbin $i + done + + dodoc "${S}"/doc/* + doman "${S}"/doc/exim.8 + use dsn && dodoc "${S}"/README.DSN + use doc && dodoc "${WORKDIR}"/${PN}-pdf-${PV//rc/RC}/doc/*.pdf + + # conf files + insinto /etc/exim + newins "${S}"/src/configure.default exim.conf.dist + if use exiscan-acl; then + newins "${S}"/src/configure.default exim.conf.exiscan-acl + fi + doins "${WORKDIR}"/system_filter.exim + doins "${FILESDIR}"/auth_conf.sub + + pamd_mimic system-auth exim auth account + + # headers, #436406 + if use dlfunc ; then + # fixup includes so they actually can be found when including + sed -i \ + -e '/#include "\(config\|store\|mytypes\).h"/s:"\(.\+\)"::' \ + local_scan.h || die + insinto /usr/include/exim + doins {config,local_scan}.h ../src/{mytypes,store}.h + fi + + insinto /etc/logrotate.d + newins "${FILESDIR}/exim.logrotate" exim + + newinitd "${FILESDIR}"/exim.rc9 exim + newconfd "${FILESDIR}"/exim.confd exim + + systemd_dounit "${FILESDIR}"/{exim.service,exim.socket,exim-submission.socket} + systemd_newunit "${FILESDIR}"/exim_at.service 'exim@.service' + systemd_newunit "${FILESDIR}"/exim-submission_at.service 'exim-submission@.service' + + diropts -m 0750 -o ${MAILUSER} -g ${MAILGROUP} + dodir /var/log/${PN} +} + +pkg_postinst() { + if [[ ! -f ${EROOT}etc/exim/exim.conf ]] ; then + einfo "${EROOT}etc/exim/system_filter.exim is a sample system_filter." + einfo "${EROOT}etc/exim/auth_conf.sub contains the configuration sub for using smtp auth." + einfo "Please create ${EROOT}etc/exim/exim.conf from ${EROOT}etc/exim/exim.conf.dist." + fi + use dane && einfo "DANE support is experimental" + if use dcc ; then + einfo "DCC support is experimental, you can find some limited" + einfo "documentation at the bottom of this prerelease message:" + einfo "http://article.gmane.org/gmane.mail.exim.devel/3579" + fi + use spf && einfo "SPF support is experimental" + use srs && einfo "SRS support is experimental" + if use dmarc ; then + einfo "DMARC support is experimental. See global settings to" + einfo "configure DMARC, for usage see the documentation at " + einfo "experimental-spec.txt." + fi + use tpda && einfo "TPDA/EVENT support is experimental" + use proxy && einfo "proxy support is experimental" + use dsn && einfo "DSN support is experimental" + elog "The obsolete acl condition 'demime' is removed, the replacements" + elog "are the ACLs acl_smtp_mime and acl_not_smtp_mime" +} diff --git a/media-libs/imlib/imlib-1.9.15-r5.ebuild b/media-libs/imlib/imlib-1.9.15-r5.ebuild index cc3508ddd8f6..8777a1fccd18 100644 --- a/media-libs/imlib/imlib-1.9.15-r5.ebuild +++ b/media-libs/imlib/imlib-1.9.15-r5.ebuild @@ -13,7 +13,7 @@ SRC_URI="mirror://gnome/sources/${PN}/${PVP[0]}.${PVP[1]}/${P}.tar.bz2 LICENSE="GPL-2" SLOT="0" -KEYWORDS="alpha amd64 arm ~hppa ia64 ~mips ppc ppc64 ~sh sparc x86 ~x86-fbsd" +KEYWORDS="alpha amd64 arm hppa ia64 ~mips ppc ppc64 ~sh sparc x86 ~x86-fbsd" IUSE="doc static-libs" RDEPEND=" diff --git a/media-libs/musicbrainz/musicbrainz-5.1.0.ebuild b/media-libs/musicbrainz/musicbrainz-5.1.0.ebuild index 235864ee3bcb..72ca79d1925e 100644 --- a/media-libs/musicbrainz/musicbrainz-5.1.0.ebuild +++ b/media-libs/musicbrainz/musicbrainz-5.1.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -12,7 +12,7 @@ SRC_URI="https://github.com/metabrainz/lib${PN}/releases/download/release-${PV}/ LICENSE="LGPL-2.1" SLOT="5/1" # soname of libmusicbrainz5.so -KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux" +KEYWORDS="~alpha amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux" IUSE="examples test" RDEPEND=" diff --git a/media-plugins/frei0r-plugins/frei0r-plugins-1.5.0.ebuild b/media-plugins/frei0r-plugins/frei0r-plugins-1.5.0.ebuild index 541c06a3a734..43d9d29caf28 100644 --- a/media-plugins/frei0r-plugins/frei0r-plugins-1.5.0.ebuild +++ b/media-plugins/frei0r-plugins/frei0r-plugins-1.5.0.ebuild @@ -12,7 +12,7 @@ SRC_URI="http://files.dyne.org/frei0r/releases/${P}.tar.gz" LICENSE="GPL-2" SLOT="0" -KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-fbsd ~x86-fbsd" +KEYWORDS="amd64 ~hppa ~ppc ~x86 ~amd64-fbsd ~x86-fbsd" IUSE="doc +facedetect +scale0tilt" RDEPEND="x11-libs/cairo diff --git a/media-sound/qmpdclient/qmpdclient-1.2.2-r2.ebuild b/media-sound/qmpdclient/qmpdclient-1.2.2-r2.ebuild index 412a266223dd..a17ae02cb0de 100644 --- a/media-sound/qmpdclient/qmpdclient-1.2.2-r2.ebuild +++ b/media-sound/qmpdclient/qmpdclient-1.2.2-r2.ebuild @@ -12,7 +12,7 @@ SRC_URI="http://dump.bitcheese.net/files/${P}.tar.bz2" LICENSE="GPL-2" SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86" +KEYWORDS="amd64 ~ppc ~x86" IUSE="debug" DEPEND="dev-qt/qtdbus:4 diff --git a/metadata/dtd/timestamp.chk b/metadata/dtd/timestamp.chk index 99bc8eeaf2f4..693ae2f18c00 100644 --- a/metadata/dtd/timestamp.chk +++ b/metadata/dtd/timestamp.chk @@ -1 +1 @@ -Tue, 31 Jan 2017 05:13:22 +0000 +Tue, 31 Jan 2017 09:43:33 +0000 diff --git a/metadata/glsa/timestamp.chk b/metadata/glsa/timestamp.chk index 679a2fc44b20..693ae2f18c00 100644 --- a/metadata/glsa/timestamp.chk +++ b/metadata/glsa/timestamp.chk @@ -1 +1 @@ -Tue, 31 Jan 2017 05:13:23 +0000 +Tue, 31 Jan 2017 09:43:33 +0000 diff --git a/metadata/md5-cache/app-arch/mt-st-1.3 b/metadata/md5-cache/app-arch/mt-st-1.3 index 7352adad47f6..8d31dbe1a4c8 100644 --- a/metadata/md5-cache/app-arch/mt-st-1.3 +++ b/metadata/md5-cache/app-arch/mt-st-1.3 @@ -2,9 +2,9 @@ DEFINED_PHASES=compile install DESCRIPTION=control magnetic tape drive operation EAPI=6 HOMEPAGE=https://github.com/iustin/mt-st -KEYWORDS=~alpha amd64 ~hppa ia64 ~mips ppc ppc64 sparc x86 +KEYWORDS=alpha amd64 hppa ia64 ~mips ppc ppc64 sparc x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/iustin/mt-st/releases/download/mt-st-1.3/mt-st-1.3.tar.gz _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=a2ccb379ca74717080487011ba0d9517 +_md5_=68d7462ec82473645e230a3e7e0f3bef diff --git a/metadata/md5-cache/app-editors/emacs-vcs-26.0.9999 b/metadata/md5-cache/app-editors/emacs-vcs-26.0.9999 index e1bfd200c9fc..1b1fe9a72df8 100644 --- a/metadata/md5-cache/app-editors/emacs-vcs-26.0.9999 +++ b/metadata/md5-cache/app-editors/emacs-vcs-26.0.9999 @@ -9,4 +9,4 @@ RDEPEND=sys-libs/ncurses:0 >=app-eselect/eselect-emacs-1.16 >=app-emacs/emacs-co REQUIRED_USE=?? ( aqua X ) SLOT=26 _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c elisp-common 9f56c4e9bf1282dbfc2a5a09e1124e74 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 git-r3 6efc2d7de07a77bf72c7207b48d0e123 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 readme.gentoo-r1 03878c06495db70bc36bd717383c09f7 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=4e104f360bf0a5016957ea8c81bb8485 +_md5_=5bcfaf0618ddfb28f26aca59903b5d4c diff --git a/metadata/md5-cache/dev-lua/lpeg-1.0.1 b/metadata/md5-cache/dev-lua/lpeg-1.0.1 new file mode 100644 index 000000000000..f7942bfbd7bd --- /dev/null +++ b/metadata/md5-cache/dev-lua/lpeg-1.0.1 @@ -0,0 +1,13 @@ +DEFINED_PHASES=compile install prepare test +DEPEND=!luajit? ( >=dev-lang/lua-5.1:= ) luajit? ( dev-lang/luajit:2= ) virtual/pkgconfig +DESCRIPTION=Parsing Expression Grammars for Lua +EAPI=6 +HOMEPAGE=http://www.inf.puc-rio.br/~roberto/lpeg/ +IUSE=debug doc luajit +KEYWORDS=~amd64 ~arm ~hppa ~ppc ~x86 +LICENSE=MIT +RDEPEND=!luajit? ( >=dev-lang/lua-5.1:= ) luajit? ( dev-lang/luajit:2= ) +SLOT=0 +SRC_URI=http://www.inf.puc-rio.br/~roberto/lpeg/lpeg-1.0.1.tar.gz +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 +_md5_=1481a12d87a8c8adbaabeac94f5a7107 diff --git a/metadata/md5-cache/dev-qt/qtwebengine-5.7.1-r1 b/metadata/md5-cache/dev-qt/qtwebengine-5.7.1-r1 new file mode 100644 index 000000000000..8dcf6beda4d3 --- /dev/null +++ b/metadata/md5-cache/dev-qt/qtwebengine-5.7.1-r1 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile configure install postinst postrm prepare setup test unpack +DEPEND=app-arch/snappy dev-libs/glib:2 dev-libs/nspr dev-libs/nss ~dev-qt/qtcore-5.7.1 ~dev-qt/qtdeclarative-5.7.1 ~dev-qt/qtgui-5.7.1 ~dev-qt/qtnetwork-5.7.1 ~dev-qt/qtwebchannel-5.7.1[qml] dev-libs/expat dev-libs/jsoncpp:= dev-libs/libevent:= dev-libs/libxml2 dev-libs/libxslt dev-libs/protobuf:= media-libs/flac media-libs/fontconfig media-libs/freetype media-libs/harfbuzz:= media-libs/libpng:0= >=media-libs/libvpx-1.5:=[svc] media-libs/libwebp:= media-libs/mesa media-libs/opus media-libs/speex net-libs/libsrtp:0= sys-apps/dbus sys-apps/pciutils sys-libs/libcap sys-libs/zlib[minizip] x11-libs/libdrm x11-libs/libX11 x11-libs/libXcomposite x11-libs/libXcursor x11-libs/libXdamage x11-libs/libXext x11-libs/libXfixes x11-libs/libXi x11-libs/libXrandr x11-libs/libXrender x11-libs/libXScrnSaver x11-libs/libXtst alsa? ( media-libs/alsa-lib ) geolocation? ( ~dev-qt/qtpositioning-5.7.1 ) pulseaudio? ( media-sound/pulseaudio:= ) system-ffmpeg? ( media-video/ffmpeg:0= ) system-icu? ( dev-libs/icu:= ) widgets? ( ~dev-qt/qtwidgets-5.7.1 ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) dev-util/gperf dev-util/ninja dev-util/re2c sys-devel/bison pax_kernel? ( sys-apps/elfix ) dev-lang/perl virtual/pkgconfig test? ( ~dev-qt/qttest-5.7.1 ) +DESCRIPTION=Library for rendering dynamic web content in Qt5 C++ and QML applications +EAPI=6 +HOMEPAGE=https://www.qt.io/ +IUSE=alsa bindist geolocation pax_kernel pulseaudio +system-ffmpeg +system-icu widgets debug test +KEYWORDS=~amd64 ~x86 +LICENSE=|| ( GPL-2 GPL-3 LGPL-3 ) FDL-1.3 +RDEPEND=app-arch/snappy dev-libs/glib:2 dev-libs/nspr dev-libs/nss ~dev-qt/qtcore-5.7.1 ~dev-qt/qtdeclarative-5.7.1 ~dev-qt/qtgui-5.7.1 ~dev-qt/qtnetwork-5.7.1 ~dev-qt/qtwebchannel-5.7.1[qml] dev-libs/expat dev-libs/jsoncpp:= dev-libs/libevent:= dev-libs/libxml2 dev-libs/libxslt dev-libs/protobuf:= media-libs/flac media-libs/fontconfig media-libs/freetype media-libs/harfbuzz:= media-libs/libpng:0= >=media-libs/libvpx-1.5:=[svc] media-libs/libwebp:= media-libs/mesa media-libs/opus media-libs/speex net-libs/libsrtp:0= sys-apps/dbus sys-apps/pciutils sys-libs/libcap sys-libs/zlib[minizip] x11-libs/libdrm x11-libs/libX11 x11-libs/libXcomposite x11-libs/libXcursor x11-libs/libXdamage x11-libs/libXext x11-libs/libXfixes x11-libs/libXi x11-libs/libXrandr x11-libs/libXrender x11-libs/libXScrnSaver x11-libs/libXtst alsa? ( media-libs/alsa-lib ) geolocation? ( ~dev-qt/qtpositioning-5.7.1 ) pulseaudio? ( media-sound/pulseaudio:= ) system-ffmpeg? ( media-video/ffmpeg:0= ) system-icu? ( dev-libs/icu:= ) widgets? ( ~dev-qt/qtwidgets-5.7.1 ) dev-qt/qtchooser +RESTRICT=test +SLOT=5/5.7 +SRC_URI=https://download.qt.io/official_releases/qt/5.7/5.7.1/submodules/qtwebengine-opensource-src-5.7.1.tar.xz +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 pax-utils 4c2654a34ebe732e85fda354f6ee642f python-any-r1 1c20f9b800324335a8e3b137363362e8 python-utils-r1 d275302cd06aedef2ba08f81f3104206 qt5-build 83d2fb3487673baa701c7d258ae004c5 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c virtualx 86c9305a59b3e0459e7fbef3a5f30b96 +_md5_=40f3e547ff55079411eba908b63ae898 diff --git a/metadata/md5-cache/dev-ros/python_qt_binding-0.3.2 b/metadata/md5-cache/dev-ros/python_qt_binding-0.3.2 new file mode 100644 index 000000000000..84ad778a4f17 --- /dev/null +++ b/metadata/md5-cache/dev-ros/python_qt_binding-0.3.2 @@ -0,0 +1,13 @@ +DEFINED_PHASES=compile configure install prepare test +DEPEND=dev-python/PyQt5[gui,widgets,python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] sys-devel/make >=dev-util/cmake-3.5.2 dev-util/catkin[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] dev-python/empy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] +DESCRIPTION=Infrastructure for an integrated graphical user interface based on Qt +EAPI=5 +HOMEPAGE=http://wiki.ros.org/python_qt_binding +IUSE=python_targets_python2_7 python_targets_python3_4 test +KEYWORDS=~amd64 +LICENSE=BSD +RDEPEND=dev-python/PyQt5[gui,widgets,python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] dev-util/catkin[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] dev-python/empy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] dev-lang/python-exec:2 python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-)] +SLOT=0 +SRC_URI=https://github.com/ros-visualization/python_qt_binding/archive/0.3.2.tar.gz -> python_qt_binding-0.3.2.tar.gz +_eclasses_=cmake-utils f0c2647fb321257c91c6a967f362d053 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 ros-catkin 5d7f690679dfb6a4ac14c1bd25f098cd toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c +_md5_=f4ec78bc8430fa84c30a9159f924457c diff --git a/metadata/md5-cache/dev-ruby/nio4r-2.0.0 b/metadata/md5-cache/dev-ruby/nio4r-2.0.0 new file mode 100644 index 000000000000..bf9849fc05ee --- /dev/null +++ b/metadata/md5-cache/dev-ruby/nio4r-2.0.0 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile configure install prepare setup test unpack +DEPEND=ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby21? ( test? ( dev-ruby/rspec:3[ruby_targets_ruby21] ) ) ruby_targets_ruby22? ( test? ( dev-ruby/rspec:3[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( test? ( dev-ruby/rspec:3[ruby_targets_ruby23] ) ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) test? ( ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) ) +DESCRIPTION=A high performance selector API for monitoring IO objects +EAPI=5 +HOMEPAGE=https://github.com/celluloid/nio4r +IUSE=elibc_FreeBSD ruby_targets_ruby21 ruby_targets_ruby22 ruby_targets_ruby23 test test +KEYWORDS=~amd64 ~arm ~ppc64 ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris +LICENSE=MIT +RDEPEND=ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) +REQUIRED_USE=|| ( ruby_targets_ruby21 ruby_targets_ruby22 ruby_targets_ruby23 ) +SLOT=2 +SRC_URI=mirror://rubygems/nio4r-2.0.0.gem +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 java-utils-2 a50950a73b5d5db46f42638e2996a087 multilib 165fc17c38d1b11dac2008280dab6e80 ruby-fakegem 2b249022d4895a29827658b7d630c461 ruby-ng 934780d41ab18a9ff091703f511371be ruby-utils 382c3a262907e1219a21618dfd1a01a0 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c +_md5_=33d5b58f2069b9da81ba5c5877aaf1f8 diff --git a/metadata/md5-cache/dev-ruby/power_assert-1.0.1 b/metadata/md5-cache/dev-ruby/power_assert-1.0.1 new file mode 100644 index 000000000000..d280740b421e --- /dev/null +++ b/metadata/md5-cache/dev-ruby/power_assert-1.0.1 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile configure install prepare setup test unpack +DEPEND=ruby_targets_ruby20? ( test? ( dev-ruby/test-unit[ruby_targets_ruby20] ) ) ruby_targets_ruby21? ( test? ( dev-ruby/test-unit[ruby_targets_ruby21] ) ) ruby_targets_ruby22? ( test? ( dev-ruby/test-unit[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( test? ( dev-ruby/test-unit[ruby_targets_ruby23] ) ) ruby_targets_ruby24? ( test? ( dev-ruby/test-unit[ruby_targets_ruby24] ) ) ruby_targets_ruby20? ( dev-lang/ruby:2.0 ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby24? ( dev-lang/ruby:2.4 ) ruby_targets_ruby20? ( doc? ( dev-ruby/rdoc[ruby_targets_ruby20] ) ) ruby_targets_ruby21? ( doc? ( dev-ruby/rdoc[ruby_targets_ruby21] ) ) ruby_targets_ruby22? ( doc? ( dev-ruby/rdoc[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( doc? ( dev-ruby/rdoc[ruby_targets_ruby23] ) ) ruby_targets_ruby24? ( doc? ( dev-ruby/rdoc[ruby_targets_ruby24] ) ) ruby_targets_ruby20? ( test? ( dev-ruby/rake[ruby_targets_ruby20] ) ) ruby_targets_ruby21? ( test? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby22? ( test? ( dev-ruby/rake[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( test? ( dev-ruby/rake[ruby_targets_ruby23] ) ) ruby_targets_ruby24? ( test? ( dev-ruby/rake[ruby_targets_ruby24] ) ) ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) ruby_targets_ruby24? ( virtual/rubygems[ruby_targets_ruby24] ) test? ( ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) ruby_targets_ruby24? ( virtual/rubygems[ruby_targets_ruby24] ) ) +DESCRIPTION=Shows each value of variables and method calls in the expression +EAPI=5 +HOMEPAGE=https://github.com/k-tsj/power_assert +IUSE=elibc_FreeBSD ruby_targets_ruby20 ruby_targets_ruby21 ruby_targets_ruby22 ruby_targets_ruby23 ruby_targets_ruby24 doc test test +KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~amd64-linux ~x86-fbsd ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris +LICENSE=|| ( Ruby BSD-2 ) +RDEPEND=ruby_targets_ruby20? ( dev-lang/ruby:2.0 ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby24? ( dev-lang/ruby:2.4 ) ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) ruby_targets_ruby24? ( virtual/rubygems[ruby_targets_ruby24] ) +REQUIRED_USE=|| ( ruby_targets_ruby20 ruby_targets_ruby21 ruby_targets_ruby22 ruby_targets_ruby23 ruby_targets_ruby24 ) +SLOT=0 +SRC_URI=https://github.com/k-tsj/power_assert/archive/v1.0.1.tar.gz -> power_assert-1.0.1.tar.gz +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 java-utils-2 a50950a73b5d5db46f42638e2996a087 multilib 165fc17c38d1b11dac2008280dab6e80 ruby-fakegem 2b249022d4895a29827658b7d630c461 ruby-ng 934780d41ab18a9ff091703f511371be ruby-utils 382c3a262907e1219a21618dfd1a01a0 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c +_md5_=8686c457ddef9398790f8e3525a91201 diff --git a/metadata/md5-cache/dev-ruby/simplecov-0.13.0 b/metadata/md5-cache/dev-ruby/simplecov-0.13.0 new file mode 100644 index 000000000000..d92877966a8d --- /dev/null +++ b/metadata/md5-cache/dev-ruby/simplecov-0.13.0 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile configure install prepare setup test unpack +DEPEND=test? ( ruby_targets_ruby21? ( >=dev-ruby/json-1.8:0[ruby_targets_ruby21] =dev-ruby/docile-1.1.0[ruby_targets_ruby21] ) ruby_targets_ruby22? ( >=dev-ruby/json-1.8:0[ruby_targets_ruby22] =dev-ruby/docile-1.1.0[ruby_targets_ruby22] ) ruby_targets_ruby23? ( >=dev-ruby/json-1.8:0[ruby_targets_ruby23] =dev-ruby/docile-1.1.0[ruby_targets_ruby23] ) ) ruby_targets_ruby21? ( test? ( dev-ruby/rspec:3[ruby_targets_ruby21] dev-ruby/test-unit:2[ruby_targets_ruby21] ) ) ruby_targets_ruby22? ( test? ( dev-ruby/rspec:3[ruby_targets_ruby22] dev-ruby/test-unit:2[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( test? ( dev-ruby/rspec:3[ruby_targets_ruby23] dev-ruby/test-unit:2[ruby_targets_ruby23] ) ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby21? ( test? ( dev-ruby/rake[ruby_targets_ruby21] ) ) ruby_targets_ruby22? ( test? ( dev-ruby/rake[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( test? ( dev-ruby/rake[ruby_targets_ruby23] ) ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) test? ( ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) ) +DESCRIPTION=Code coverage with a configuration library and merging across test suites +EAPI=5 +HOMEPAGE=https://www.ruby-toolbox.com/projects/simplecov https://github.com/colszowka/simplecov +IUSE=doc test elibc_FreeBSD ruby_targets_ruby21 ruby_targets_ruby22 ruby_targets_ruby23 doc test test +KEYWORDS=~amd64 +LICENSE=MIT +RDEPEND=ruby_targets_ruby21? ( >=dev-ruby/json-1.8:0[ruby_targets_ruby21] =dev-ruby/docile-1.1.0[ruby_targets_ruby21] ) ruby_targets_ruby22? ( >=dev-ruby/json-1.8:0[ruby_targets_ruby22] =dev-ruby/docile-1.1.0[ruby_targets_ruby22] ) ruby_targets_ruby23? ( >=dev-ruby/json-1.8:0[ruby_targets_ruby23] =dev-ruby/docile-1.1.0[ruby_targets_ruby23] ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) +REQUIRED_USE=|| ( ruby_targets_ruby21 ruby_targets_ruby22 ruby_targets_ruby23 ) +SLOT=0.8 +SRC_URI=mirror://rubygems/simplecov-0.13.0.gem +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 java-utils-2 a50950a73b5d5db46f42638e2996a087 multilib 165fc17c38d1b11dac2008280dab6e80 ruby-fakegem 2b249022d4895a29827658b7d630c461 ruby-ng 934780d41ab18a9ff091703f511371be ruby-utils 382c3a262907e1219a21618dfd1a01a0 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c +_md5_=1d4794bc04bd7f23c69b5e5826f27295 diff --git a/metadata/md5-cache/dev-tex/latex2html-2017.2 b/metadata/md5-cache/dev-tex/latex2html-2017.2 new file mode 100644 index 000000000000..97ebb230aadf --- /dev/null +++ b/metadata/md5-cache/dev-tex/latex2html-2017.2 @@ -0,0 +1,12 @@ +DEFINED_PHASES=configure install postinst postrm prepare +DEPEND=app-text/ghostscript-gpl virtual/latex-base media-libs/netpbm dev-lang/perl gif? ( media-libs/giflib ) png? ( media-libs/libpng:0 ) +DESCRIPTION=Convertor written in Perl that converts LATEX documents to HTML +EAPI=6 +HOMEPAGE=http://www.latex2html.org/ +IUSE=gif png +KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris +LICENSE=GPL-2 +RDEPEND=app-text/ghostscript-gpl virtual/latex-base media-libs/netpbm dev-lang/perl gif? ( media-libs/giflib ) png? ( media-libs/libpng:0 ) +SLOT=0 +SRC_URI=http://mirrors.ctan.org/support/latex2html/latex2html-2017.2.tar.gz +_md5_=85fd540bedf226268bb34e801c8ed45a diff --git a/metadata/md5-cache/dev-tex/latexmk-452c b/metadata/md5-cache/dev-tex/latexmk-452c new file mode 100644 index 000000000000..61fe24b10ca4 --- /dev/null +++ b/metadata/md5-cache/dev-tex/latexmk-452c @@ -0,0 +1,12 @@ +DEFINED_PHASES=install +DEPEND=virtual/latex-base dev-lang/perl app-arch/unzip +DESCRIPTION=Perl script for automatically building LaTeX documents +EAPI=5 +HOMEPAGE=http://www.phys.psu.edu/~collins/software/latexmk/ +KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~ppc-macos ~x64-macos ~x86-macos +LICENSE=GPL-2 +RDEPEND=virtual/latex-base dev-lang/perl +SLOT=0 +SRC_URI=http://www.phys.psu.edu/~collins/software/latexmk/latexmk-452c.zip +_eclasses_=bash-completion-r1 acf715fa09463f043fbfdc1640f3fb85 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 +_md5_=452056c2173e0073fa2fe6b4f5d4106d diff --git a/metadata/md5-cache/dev-util/cmdtest-0.27 b/metadata/md5-cache/dev-util/cmdtest-0.27 new file mode 100644 index 000000000000..186e4bf810dd --- /dev/null +++ b/metadata/md5-cache/dev-util/cmdtest-0.27 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile configure install prepare test +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/cliapp[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/ttystatus[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] +DESCRIPTION=black box tests Unix command line tools +EAPI=6 +HOMEPAGE=http://liw.fi/cmdtest/ +IUSE=python_targets_python2_7 +KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 +LICENSE=GPL-3 +RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] +REQUIRED_USE=|| ( python_targets_python2_7 ) +SLOT=0 +SRC_URI=http://code.liw.fi/debian/pool/main/c/cmdtest/cmdtest_0.27.orig.tar.xz +_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48 +_md5_=36bd1e4d022404a6f3a18bae7cd0173d diff --git a/metadata/md5-cache/mail-mta/exim-4.89_rc1 b/metadata/md5-cache/mail-mta/exim-4.89_rc1 new file mode 100644 index 000000000000..e74324df6a21 --- /dev/null +++ b/metadata/md5-cache/mail-mta/exim-4.89_rc1 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile configure install postinst prepare +DEPEND=>=sys-apps/sed-4.0.5 >=sys-libs/db-3.2:= dev-libs/libpcre perl? ( dev-lang/perl:= ) pam? ( virtual/pam ) tcpd? ( sys-apps/tcp-wrappers ) ssl? ( !libressl? ( dev-libs/openssl:0= ) libressl? ( dev-libs/libressl:= ) ) gnutls? ( net-libs/gnutls[pkcs11?] dev-libs/libtasn1 ) ldap? ( >=net-nds/openldap-2.0.7 ) nis? ( elibc_glibc? ( || ( =sys-libs/glibc-2.23[rpc] ) ) ) mysql? ( virtual/libmysqlclient ) postgres? ( dev-db/postgresql:= ) sasl? ( >=dev-libs/cyrus-sasl-2.1.26-r2 ) redis? ( dev-libs/hiredis ) spf? ( >=mail-filter/libspf2-1.2.5-r1 ) dmarc? ( mail-filter/opendmarc ) srs? ( mail-filter/libsrs_alt ) X? ( x11-proto/xproto x11-libs/libX11 x11-libs/libXmu x11-libs/libXt x11-libs/libXaw ) sqlite? ( dev-db/sqlite ) radius? ( net-dialup/freeradius-client ) virtual/libiconv virtual/pkgconfig virtual/pkgconfig +DESCRIPTION=A highly configurable, drop-in replacement for sendmail +EAPI=6 +HOMEPAGE=http://www.exim.org/ +IUSE=dane dcc +dkim dlfunc dmarc +dnsdb doc dovecot-sasl dsn exiscan-acl gnutls ipv6 ldap libressl lmtp maildir mbx mysql nis pam perl pkcs11 postgres +prdr proxy radius redis sasl selinux spf sqlite srs ssl syslog tcpd tpda X elibc_glibc +KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~x86-solaris +LICENSE=GPL-2 +RDEPEND=>=sys-apps/sed-4.0.5 >=sys-libs/db-3.2:= dev-libs/libpcre perl? ( dev-lang/perl:= ) pam? ( virtual/pam ) tcpd? ( sys-apps/tcp-wrappers ) ssl? ( !libressl? ( dev-libs/openssl:0= ) libressl? ( dev-libs/libressl:= ) ) gnutls? ( net-libs/gnutls[pkcs11?] dev-libs/libtasn1 ) ldap? ( >=net-nds/openldap-2.0.7 ) nis? ( elibc_glibc? ( || ( =sys-libs/glibc-2.23[rpc] ) ) ) mysql? ( virtual/libmysqlclient ) postgres? ( dev-db/postgresql:= ) sasl? ( >=dev-libs/cyrus-sasl-2.1.26-r2 ) redis? ( dev-libs/hiredis ) spf? ( >=mail-filter/libspf2-1.2.5-r1 ) dmarc? ( mail-filter/opendmarc ) srs? ( mail-filter/libsrs_alt ) X? ( x11-proto/xproto x11-libs/libX11 x11-libs/libXmu x11-libs/libXt x11-libs/libXaw ) sqlite? ( dev-db/sqlite ) radius? ( net-dialup/freeradius-client ) virtual/libiconv !mail-mta/courier !mail-mta/esmtp !mail-mta/mini-qmail !=mail-mta/msmtp-1.4.19-r1[mta] !mail-mta/netqmail !mail-mta/nullmailer !mail-mta/postfix !mail-mta/qmail-ldap !mail-mta/sendmail !mail-mta/opensmtpd !=mail-mta/ssmtp-2.64-r2[mta] !net-mail/mailwrapper >=net-mail/mailbase-0.00-r5 virtual/logger dcc? ( mail-filter/dcc ) selinux? ( sec-policy/selinux-exim ) +REQUIRED_USE=dane? ( !gnutls ) dmarc? ( spf dkim ) pkcs11? ( gnutls ) spf? ( exiscan-acl ) srs? ( exiscan-acl ) +SLOT=0 +SRC_URI=ftp://ftp.exim.org/pub/exim/exim4/test/exim-4.89_RC1.tar.bz2 mirror://gentoo/system_filter.exim.gz doc? ( ftp://ftp.exim.org/pub/exim/exim4/test/exim-pdf-4.89_RC1.tar.bz2 ) +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 pam 3ecd5b75e39b0bb05a3183c08fcdfdb4 systemd 5b6ca8b2fc1307ca593223f327342c96 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 +_md5_=442efa931d0684f699de374b1bc35888 diff --git a/metadata/md5-cache/media-libs/imlib-1.9.15-r5 b/metadata/md5-cache/media-libs/imlib-1.9.15-r5 index ae5079a6385e..b4194a2f852c 100644 --- a/metadata/md5-cache/media-libs/imlib-1.9.15-r5 +++ b/metadata/md5-cache/media-libs/imlib-1.9.15-r5 @@ -4,10 +4,10 @@ DESCRIPTION=Image loading and rendering library EAPI=6 HOMEPAGE=http://ftp.acc.umu.se/pub/GNOME/sources/imlib/1.9/ IUSE=doc static-libs abi_x86_32 abi_x86_64 abi_x86_x32 abi_mips_n32 abi_mips_n64 abi_mips_o32 abi_ppc_32 abi_ppc_64 abi_s390_32 abi_s390_64 -KEYWORDS=alpha amd64 arm ~hppa ia64 ~mips ppc ppc64 ~sh sparc x86 ~x86-fbsd +KEYWORDS=alpha amd64 arm hppa ia64 ~mips ppc ppc64 ~sh sparc x86 ~x86-fbsd LICENSE=GPL-2 RDEPEND=>=media-libs/tiff-3.9.7-r1:0[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] >=media-libs/giflib-5.1:0=[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] >=media-libs/libpng-1.2.51:0=[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] >=virtual/jpeg-0-r2:0[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] >=x11-libs/libICE-1.0.8-r1[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] >=x11-libs/libSM-1.2.1-r1[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] >=x11-libs/libXext-1.3.2[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] SLOT=0 SRC_URI=mirror://gnome/sources/imlib/1.9/imlib-1.9.15.tar.bz2 mirror://gentoo/gtk-1-for-imlib.m4.bz2 _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multilib-build 8fe2e81aeb36cdf8a6cc5f50443879cc multilib-minimal 0224dee31c0f98405d572e14ad6dee65 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=a2b38e2dcb283f2a70cf9e4c47ecc2fc +_md5_=c2ed2e532b1a914a8d420c0f49d2d9e1 diff --git a/metadata/md5-cache/media-libs/musicbrainz-5.1.0 b/metadata/md5-cache/media-libs/musicbrainz-5.1.0 index 75048c01a9e5..ea03de7ae878 100644 --- a/metadata/md5-cache/media-libs/musicbrainz-5.1.0 +++ b/metadata/md5-cache/media-libs/musicbrainz-5.1.0 @@ -4,10 +4,10 @@ DESCRIPTION=Client Library for accessing the latest XML based MusicBrainz web se EAPI=6 HOMEPAGE=http://musicbrainz.org/doc/libmusicbrainz IUSE=examples test -KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux +KEYWORDS=~alpha amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux LICENSE=LGPL-2.1 RDEPEND=dev-libs/libxml2 net-libs/neon SLOT=5/1 SRC_URI=https://github.com/metabrainz/libmusicbrainz/releases/download/release-5.1.0/libmusicbrainz-5.1.0.tar.gz _eclasses_=cmake-utils f0c2647fb321257c91c6a967f362d053 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=972fdd4d4d6ece642e4ec1ba2fb37761 +_md5_=7ff08d4d4859043f7009734c682bc5aa diff --git a/metadata/md5-cache/media-plugins/frei0r-plugins-1.5.0 b/metadata/md5-cache/media-plugins/frei0r-plugins-1.5.0 index 6172e6c148fd..689b5b27c472 100644 --- a/metadata/md5-cache/media-plugins/frei0r-plugins-1.5.0 +++ b/metadata/md5-cache/media-plugins/frei0r-plugins-1.5.0 @@ -4,10 +4,10 @@ DESCRIPTION=A minimalistic plugin API for video effects EAPI=6 HOMEPAGE=http://www.dyne.org/software/frei0r/ IUSE=doc +facedetect +scale0tilt -KEYWORDS=~amd64 ~hppa ~ppc ~x86 ~amd64-fbsd ~x86-fbsd +KEYWORDS=amd64 ~hppa ~ppc ~x86 ~amd64-fbsd ~x86-fbsd LICENSE=GPL-2 RDEPEND=x11-libs/cairo facedetect? ( >=media-libs/opencv-2.3.0 ) scale0tilt? ( >=media-libs/gavl-1.2.0 ) SLOT=0 SRC_URI=http://files.dyne.org/frei0r/releases/frei0r-plugins-1.5.0.tar.gz _eclasses_=cmake-utils f0c2647fb321257c91c6a967f362d053 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=698afe9da46bf5e1bf15a4c190189006 +_md5_=005a3f39d21ecf4461ebfd8907bd950f diff --git a/metadata/md5-cache/media-sound/qmpdclient-1.2.2-r2 b/metadata/md5-cache/media-sound/qmpdclient-1.2.2-r2 index 75bb103edfd7..4f9ce4dca32f 100644 --- a/metadata/md5-cache/media-sound/qmpdclient-1.2.2-r2 +++ b/metadata/md5-cache/media-sound/qmpdclient-1.2.2-r2 @@ -4,10 +4,10 @@ DESCRIPTION=QMPDClient with NBL additions, such as lyrics' display EAPI=6 HOMEPAGE=http://bitcheese.net/wiki/QMPDClient IUSE=debug -KEYWORDS=~amd64 ~ppc ~x86 +KEYWORDS=amd64 ~ppc ~x86 LICENSE=GPL-2 RDEPEND=dev-qt/qtdbus:4 dev-qt/qtgui:4 dev-qt/qtwebkit:4 dev-qt/qtxmlpatterns:4 SLOT=0 SRC_URI=http://dump.bitcheese.net/files/qmpdclient-1.2.2.tar.bz2 _eclasses_=cmake-utils f0c2647fb321257c91c6a967f362d053 eutils ea170b525f6a38a006be05c9d9429f13 fdo-mime 92d07846ea8ea54172f8c0112a47ae3d flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=a5d4079795feb42afdafb2e722a35361 +_md5_=2f494c3ba73f2d38a6fc7418ade586e6 diff --git a/metadata/md5-cache/net-analyzer/tcpdump-4.9.0 b/metadata/md5-cache/net-analyzer/tcpdump-4.9.0 index 3bb404b4bc18..6b1e0f31a2f6 100644 --- a/metadata/md5-cache/net-analyzer/tcpdump-4.9.0 +++ b/metadata/md5-cache/net-analyzer/tcpdump-4.9.0 @@ -4,10 +4,10 @@ DESCRIPTION=A Tool for network monitoring and data acquisition EAPI=6 HOMEPAGE=http://www.tcpdump.org/ https://github.com/the-tcpdump-group/tcpdump IUSE=+drop-root libressl smi ssl samba suid test -KEYWORDS=alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux +KEYWORDS=alpha amd64 ~arm ~arm64 hppa ~ia64 ~mips ~ppc ppc64 ~s390 ~sh ~sparc ~x86 ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux LICENSE=BSD RDEPEND=drop-root? ( sys-libs/libcap-ng ) net-libs/libpcap smi? ( net-libs/libsmi ) ssl? ( !libressl? ( >=dev-libs/openssl-0.9.6m:0 ) libressl? ( dev-libs/libressl ) ) SLOT=0 SRC_URI=https://dev.gentoo.org/~jer/tcpdump-4.9.0.tar.gz https://github.com/the-tcpdump-group/tcpdump/archive/tcpdump-4.9.0.tar.gz _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 user 80aaa71614ced86f02ee1a513821dc87 -_md5_=48d42a2672507b3d576d504ea98415f8 +_md5_=edc0fd30169d4aae799f73e35aab468f diff --git a/metadata/md5-cache/net-proxy/haproxy-1.7.2 b/metadata/md5-cache/net-proxy/haproxy-1.7.2 new file mode 100644 index 000000000000..a086b1344689 --- /dev/null +++ b/metadata/md5-cache/net-proxy/haproxy-1.7.2 @@ -0,0 +1,14 @@ +DEFINED_PHASES=compile install postinst prepare setup +DEPEND=pcre? ( dev-libs/libpcre pcre-jit? ( dev-libs/libpcre[jit] ) ) ssl? ( !libressl? ( dev-libs/openssl:0=[zlib?] ) libressl? ( dev-libs/libressl:0= ) ) slz? ( dev-libs/libslz:= ) zlib? ( sys-libs/zlib ) lua? ( dev-lang/lua:5.3 ) device-atlas? ( dev-libs/device-atlas-api-c ) virtual/pkgconfig +DESCRIPTION=A TCP/HTTP reverse proxy for high availability environments +EAPI=6 +HOMEPAGE=http://haproxy.1wt.eu +IUSE=+crypt doc examples libressl slz net_ns +pcre pcre-jit ssl tools vim-syntax +zlib lua device-atlas 51degrees wurfl +KEYWORDS=~amd64 ~arm ~ppc ~x86 +LICENSE=GPL-2 LGPL-2.1 +RDEPEND=pcre? ( dev-libs/libpcre pcre-jit? ( dev-libs/libpcre[jit] ) ) ssl? ( !libressl? ( dev-libs/openssl:0=[zlib?] ) libressl? ( dev-libs/libressl:0= ) ) slz? ( dev-libs/libslz:= ) zlib? ( sys-libs/zlib ) lua? ( dev-lang/lua:5.3 ) device-atlas? ( dev-libs/device-atlas-api-c ) +REQUIRED_USE=pcre-jit? ( pcre ) device-atlas? ( pcre ) ?? ( slz zlib ) +SLOT=0 +SRC_URI=http://haproxy.1wt.eu/download/1.7/src/haproxy-1.7.2.tar.gz +_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 linux-info af49d8ab3be91bb1d38b7201dc9e5123 multilib 165fc17c38d1b11dac2008280dab6e80 systemd 5b6ca8b2fc1307ca593223f327342c96 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 user 80aaa71614ced86f02ee1a513821dc87 versionator 99ae9d758cbe7cfed19170e7d48f5a9c +_md5_=222293843524dfc28b541d831c4a3bfa diff --git a/metadata/md5-cache/net-proxy/squid-3.5.19 b/metadata/md5-cache/net-proxy/squid-3.5.19 deleted file mode 100644 index 457bd6152683..000000000000 --- a/metadata/md5-cache/net-proxy/squid-3.5.19 +++ /dev/null @@ -1,14 +0,0 @@ -DEFINED_PHASES=configure install prepare pretend setup -DEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( dev-libs/openssl:0 dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 ecap? ( virtual/pkgconfig ) test? ( dev-util/cppunit ) !=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=A full-featured web proxy cache -EAPI=6 -HOMEPAGE=http://www.squid-cache.org/ -IUSE=caps ipv6 pam ldap samba sasl kerberos nis radius ssl snmp selinux logrotate test ecap esi ssl-crtd mysql postgres sqlite qos tproxy +htcp +wccp +wccpv2 pf-transparent ipf-transparent kqueue elibc_uclibc kernel_linux -KEYWORDS=alpha amd64 arm hppa ia64 ~mips ppc ppc64 sparc x86 ~x86-fbsd -LICENSE=GPL-2 -RDEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( dev-libs/openssl:0 dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 samba? ( net-fs/samba ) mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) selinux? ( sec-policy/selinux-squid ) sqlite? ( dev-perl/DBD-SQLite ) !<=sci-biology/meme-4.8.1-r1 -REQUIRED_USE=tproxy? ( caps ) qos? ( caps ) -SLOT=0 -SRC_URI=http://www.squid-cache.org/Versions/v3/3.5/squid-3.5.19.tar.xz -_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 linux-info af49d8ab3be91bb1d38b7201dc9e5123 multilib 165fc17c38d1b11dac2008280dab6e80 pam 3ecd5b75e39b0bb05a3183c08fcdfdb4 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 user 80aaa71614ced86f02ee1a513821dc87 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=e001d227aa543a8c749730f948724353 diff --git a/metadata/md5-cache/net-proxy/squid-3.5.20 b/metadata/md5-cache/net-proxy/squid-3.5.20 deleted file mode 100644 index 1c8b9e2a5a38..000000000000 --- a/metadata/md5-cache/net-proxy/squid-3.5.20 +++ /dev/null @@ -1,14 +0,0 @@ -DEFINED_PHASES=configure install prepare pretend setup -DEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( dev-libs/openssl:0 dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 ecap? ( virtual/pkgconfig ) test? ( dev-util/cppunit ) !=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=A full-featured web proxy cache -EAPI=6 -HOMEPAGE=http://www.squid-cache.org/ -IUSE=caps ipv6 pam ldap samba sasl kerberos nis radius ssl snmp selinux logrotate test ecap esi ssl-crtd mysql postgres sqlite qos tproxy +htcp +wccp +wccpv2 pf-transparent ipf-transparent kqueue elibc_uclibc kernel_linux -KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd -LICENSE=GPL-2 -RDEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( dev-libs/openssl:0 dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 samba? ( net-fs/samba ) mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) selinux? ( sec-policy/selinux-squid ) sqlite? ( dev-perl/DBD-SQLite ) !<=sci-biology/meme-4.8.1-r1 -REQUIRED_USE=tproxy? ( caps ) qos? ( caps ) -SLOT=0 -SRC_URI=http://www.squid-cache.org/Versions/v3/3.5/squid-3.5.20.tar.xz -_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 linux-info af49d8ab3be91bb1d38b7201dc9e5123 multilib 165fc17c38d1b11dac2008280dab6e80 pam 3ecd5b75e39b0bb05a3183c08fcdfdb4 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 user 80aaa71614ced86f02ee1a513821dc87 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=2e3dbd056c697ccc7a8b0f7ff72fff5f diff --git a/metadata/md5-cache/net-proxy/squid-3.5.21 b/metadata/md5-cache/net-proxy/squid-3.5.21 deleted file mode 100644 index ce0341020ea6..000000000000 --- a/metadata/md5-cache/net-proxy/squid-3.5.21 +++ /dev/null @@ -1,14 +0,0 @@ -DEFINED_PHASES=configure install prepare pretend setup -DEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( libressl? ( dev-libs/libressl:0 ) !libressl? ( dev-libs/openssl:0 ) dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 ecap? ( virtual/pkgconfig ) test? ( dev-util/cppunit ) !=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=A full-featured web proxy cache -EAPI=6 -HOMEPAGE=http://www.squid-cache.org/ -IUSE=caps ipv6 pam ldap libressl samba sasl kerberos nis radius ssl snmp selinux logrotate test ecap esi ssl-crtd mysql postgres sqlite qos tproxy +htcp +wccp +wccpv2 pf-transparent ipf-transparent kqueue elibc_uclibc kernel_linux -KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd -LICENSE=GPL-2 -RDEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( libressl? ( dev-libs/libressl:0 ) !libressl? ( dev-libs/openssl:0 ) dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 samba? ( net-fs/samba ) mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) selinux? ( sec-policy/selinux-squid ) sqlite? ( dev-perl/DBD-SQLite ) !<=sci-biology/meme-4.8.1-r1 -REQUIRED_USE=tproxy? ( caps ) qos? ( caps ) -SLOT=0 -SRC_URI=http://www.squid-cache.org/Versions/v3/3.5/squid-3.5.21.tar.xz -_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 linux-info af49d8ab3be91bb1d38b7201dc9e5123 multilib 165fc17c38d1b11dac2008280dab6e80 pam 3ecd5b75e39b0bb05a3183c08fcdfdb4 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 user 80aaa71614ced86f02ee1a513821dc87 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=2c9e9ba7b7714e30d5e75f97fe8f0eab diff --git a/metadata/md5-cache/net-proxy/squid-3.5.22 b/metadata/md5-cache/net-proxy/squid-3.5.22 deleted file mode 100644 index c52ce334ece9..000000000000 --- a/metadata/md5-cache/net-proxy/squid-3.5.22 +++ /dev/null @@ -1,14 +0,0 @@ -DEFINED_PHASES=configure install prepare pretend setup -DEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( libressl? ( dev-libs/libressl:0 ) !libressl? ( dev-libs/openssl:0 ) dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 ecap? ( virtual/pkgconfig ) test? ( dev-util/cppunit ) !=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 -DESCRIPTION=A full-featured web proxy cache -EAPI=6 -HOMEPAGE=http://www.squid-cache.org/ -IUSE=caps ipv6 pam ldap libressl samba sasl kerberos nis radius ssl snmp selinux logrotate test ecap esi ssl-crtd mysql postgres sqlite qos tproxy +htcp +wccp +wccpv2 pf-transparent ipf-transparent kqueue elibc_uclibc kernel_linux -KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd -LICENSE=GPL-2 -RDEPEND=caps? ( >=sys-libs/libcap-2.16 ) pam? ( virtual/pam ) ldap? ( net-nds/openldap ) kerberos? ( virtual/krb5 ) qos? ( net-libs/libnetfilter_conntrack ) ssl? ( libressl? ( dev-libs/libressl:0 ) !libressl? ( dev-libs/openssl:0 ) dev-libs/nettle >=net-libs/gnutls-3.1.5 ) sasl? ( dev-libs/cyrus-sasl ) ecap? ( net-libs/libecap:1 ) esi? ( dev-libs/expat dev-libs/libxml2 ) !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) >=sys-libs/db-4:* dev-lang/perl dev-libs/libltdl:0 samba? ( net-fs/samba ) mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) selinux? ( sec-policy/selinux-squid ) sqlite? ( dev-perl/DBD-SQLite ) !<=sci-biology/meme-4.8.1-r1 -REQUIRED_USE=tproxy? ( caps ) qos? ( caps ) -SLOT=0 -SRC_URI=http://www.squid-cache.org/Versions/v3/3.5/squid-3.5.22.tar.xz -_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 linux-info af49d8ab3be91bb1d38b7201dc9e5123 multilib 165fc17c38d1b11dac2008280dab6e80 pam 3ecd5b75e39b0bb05a3183c08fcdfdb4 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 user 80aaa71614ced86f02ee1a513821dc87 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=2c9e9ba7b7714e30d5e75f97fe8f0eab diff --git a/metadata/md5-cache/sci-libs/opencascade-6.7.1-r1 b/metadata/md5-cache/sci-libs/opencascade-6.7.1-r1 index a6229a244c28..dae69858f4c0 100644 --- a/metadata/md5-cache/sci-libs/opencascade-6.7.1-r1 +++ b/metadata/md5-cache/sci-libs/opencascade-6.7.1-r1 @@ -7,8 +7,8 @@ IUSE=debug doc examples freeimage gl2ps java qt4 +tbb elibc_FreeBSD java KEYWORDS=~amd64 ~x86 LICENSE=|| ( Open-CASCADE-LGPL-2.1-Exception-1.0 LGPL-2.1 ) RDEPEND=app-eselect/eselect-opencascade dev-lang/tcl:0= dev-lang/tk:0= dev-tcltk/itcl dev-tcltk/itk dev-tcltk/tix media-libs/ftgl virtual/glu virtual/opengl x11-libs/libXmu freeimage? ( media-libs/freeimage ) gl2ps? ( x11-libs/gl2ps ) java? ( >=virtual/jdk-0:= ) tbb? ( dev-cpp/tbb ) java? ( >=dev-java/java-config-2.2.0-r3 ) -RESTRICT=bindist mirror +RESTRICT=fetch SLOT=6.7.1 SRC_URI=http://files.opencascade.com/OCCT/OCC_6.7.1_release/opencascade-6.7.1.tgz _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c check-reqs aee25bdf4e2f459af86d17f7c41dcdf6 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 java-pkg-opt-2 40db73f27fc6458ec2105812a4f261c7 java-utils-2 a50950a73b5d5db46f42638e2996a087 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=47a145078b6fec7727876178f26dec67 +_md5_=e530c782d1da0b9d8429beedc986ef51 diff --git a/metadata/md5-cache/sci-libs/opencascade-6.8.0-r1 b/metadata/md5-cache/sci-libs/opencascade-6.8.0-r1 index 80ff1743e55f..4d31e0713f5a 100644 --- a/metadata/md5-cache/sci-libs/opencascade-6.8.0-r1 +++ b/metadata/md5-cache/sci-libs/opencascade-6.8.0-r1 @@ -7,8 +7,8 @@ IUSE=debug doc examples freeimage gl2ps java qt4 +tbb elibc_FreeBSD java KEYWORDS=~amd64 ~x86 LICENSE=|| ( Open-CASCADE-LGPL-2.1-Exception-1.0 LGPL-2.1 ) RDEPEND=app-eselect/eselect-opencascade dev-lang/tcl:0= dev-lang/tk:0= dev-tcltk/itcl dev-tcltk/itk dev-tcltk/tix media-libs/ftgl virtual/glu virtual/opengl x11-libs/libXmu freeimage? ( media-libs/freeimage ) gl2ps? ( x11-libs/gl2ps ) java? ( >=virtual/jdk-0:= ) tbb? ( dev-cpp/tbb ) java? ( >=dev-java/java-config-2.2.0-r3 ) -RESTRICT=bindist mirror +RESTRICT=fetch SLOT=6.8.0 SRC_URI=http://files.opencascade.com/OCCT/OCC_6.8.0_release/opencascade-6.8.0.tgz _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c check-reqs aee25bdf4e2f459af86d17f7c41dcdf6 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 java-pkg-opt-2 40db73f27fc6458ec2105812a4f261c7 java-utils-2 a50950a73b5d5db46f42638e2996a087 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=2e56d793a3266ca8c807aa5f9ab83bd7 +_md5_=25714617fb369c290591401031e51239 diff --git a/metadata/md5-cache/sci-libs/opencascade-6.9.0-r1 b/metadata/md5-cache/sci-libs/opencascade-6.9.0-r1 index 46eab6c2f0ba..86f4c54ad0f2 100644 --- a/metadata/md5-cache/sci-libs/opencascade-6.9.0-r1 +++ b/metadata/md5-cache/sci-libs/opencascade-6.9.0-r1 @@ -7,8 +7,8 @@ IUSE=debug doc examples freeimage gl2ps java qt4 +tbb +vtk elibc_FreeBSD java KEYWORDS=~amd64 ~x86 LICENSE=|| ( Open-CASCADE-LGPL-2.1-Exception-1.0 LGPL-2.1 ) RDEPEND=app-eselect/eselect-opencascade dev-lang/tcl:0= dev-lang/tk:0= dev-tcltk/itcl dev-tcltk/itk dev-tcltk/tix media-libs/ftgl virtual/glu virtual/opengl x11-libs/libXmu freeimage? ( media-libs/freeimage ) gl2ps? ( x11-libs/gl2ps ) java? ( >=virtual/jdk-0:= ) tbb? ( dev-cpp/tbb ) vtk? ( || ( =sci-libs/vtk-6.1*[imaging] =sci-libs/vtk-6.1*[qt4] =sci-libs/vtk-6.1*[rendering] =sci-libs/vtk-6.1*[views] =sci-libs/vtk-6.1*[all-modules] ) ) java? ( >=dev-java/java-config-2.2.0-r3 ) -RESTRICT=bindist mirror +RESTRICT=fetch SLOT=6.9.0 SRC_URI=http://files.opencascade.com/OCCT/OCC_6.9.0_release/opencascade-6.9.0.tgz _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c check-reqs aee25bdf4e2f459af86d17f7c41dcdf6 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 java-pkg-opt-2 40db73f27fc6458ec2105812a4f261c7 java-utils-2 a50950a73b5d5db46f42638e2996a087 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=75dc89cda3705bc072eb90fc492bbb7a +_md5_=f9af3ee7ec9f6a3589a45eed21616b05 diff --git a/metadata/md5-cache/sci-libs/opencascade-6.9.1-r1 b/metadata/md5-cache/sci-libs/opencascade-6.9.1-r1 index aab9ff442709..97e83f6e872f 100644 --- a/metadata/md5-cache/sci-libs/opencascade-6.9.1-r1 +++ b/metadata/md5-cache/sci-libs/opencascade-6.9.1-r1 @@ -7,8 +7,8 @@ IUSE=debug doc examples freeimage gl2ps java qt4 +tbb +vtk elibc_FreeBSD java KEYWORDS=~amd64 ~x86 LICENSE=|| ( Open-CASCADE-LGPL-2.1-Exception-1.0 LGPL-2.1 ) RDEPEND=app-eselect/eselect-opencascade dev-lang/tcl:0= dev-lang/tk:0= dev-tcltk/itcl dev-tcltk/itk dev-tcltk/tix media-libs/ftgl virtual/glu virtual/opengl x11-libs/libXmu freeimage? ( media-libs/freeimage ) gl2ps? ( x11-libs/gl2ps ) java? ( >=virtual/jdk-0:= ) tbb? ( dev-cpp/tbb ) vtk? ( || ( =sci-libs/vtk-6.1*[imaging] =sci-libs/vtk-6.1*[qt4] =sci-libs/vtk-6.1*[rendering] =sci-libs/vtk-6.1*[views] =sci-libs/vtk-6.1*[all-modules] ) ) java? ( >=dev-java/java-config-2.2.0-r3 ) -RESTRICT=bindist fetch mirror +RESTRICT=fetch SLOT=6.9.1 SRC_URI=http://www.opencascade.com/sites/default/files/private/occt/OCC_6.9.1_release/opencascade-6.9.1.tgz _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c check-reqs aee25bdf4e2f459af86d17f7c41dcdf6 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 java-pkg-opt-2 40db73f27fc6458ec2105812a4f261c7 java-utils-2 a50950a73b5d5db46f42638e2996a087 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c -_md5_=504762e44783f66ca308ea8a759eb8eb +_md5_=c4d9f8ea0a1135f1b22bfb1d72c51924 diff --git a/metadata/md5-cache/sci-libs/rtabmap-0.11.14 b/metadata/md5-cache/sci-libs/rtabmap-0.11.14 new file mode 100644 index 000000000000..463e20822a40 --- /dev/null +++ b/metadata/md5-cache/sci-libs/rtabmap-0.11.14 @@ -0,0 +1,13 @@ +DEFINED_PHASES=compile configure install prepare test +DEPEND=media-libs/opencv:=[qt5(-)?] sci-libs/pcl:=[openni,vtk] sci-libs/vtk:=[qt5(-)?] sys-libs/zlib sci-libs/octomap:= ieee1394? ( media-libs/libdc1394 ) openni2? ( dev-libs/OpenNI2 ) qt5? ( dev-qt/qtwidgets:5 dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtsvg:5 ) virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.5.2 +DESCRIPTION=Real-Time Appearance-Based Mapping (RGB-D Graph SLAM) +EAPI=5 +HOMEPAGE=http://introlab.github.io/rtabmap/ +IUSE=examples ieee1394 openni2 qt5 +KEYWORDS=~amd64 +LICENSE=BSD +RDEPEND=media-libs/opencv:=[qt5(-)?] sci-libs/pcl:=[openni,vtk] sci-libs/vtk:=[qt5(-)?] sys-libs/zlib sci-libs/octomap:= ieee1394? ( media-libs/libdc1394 ) openni2? ( dev-libs/OpenNI2 ) qt5? ( dev-qt/qtwidgets:5 dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtsvg:5 ) +SLOT=0 +SRC_URI=https://github.com/introlab/rtabmap/archive/0.11.14.tar.gz -> rtabmap-0.11.14.tar.gz +_eclasses_=cmake-utils f0c2647fb321257c91c6a967f362d053 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c +_md5_=da62699aebc0827d8e7b4ff50ab53c6a diff --git a/metadata/md5-cache/sys-apps/portage-2.3.3 b/metadata/md5-cache/sys-apps/portage-2.3.3 index b4a6c08e5cec..46c286eab956 100644 --- a/metadata/md5-cache/sys-apps/portage-2.3.3 +++ b/metadata/md5-cache/sys-apps/portage-2.3.3 @@ -4,7 +4,7 @@ DESCRIPTION=Portage is the package management and distribution system for Gentoo EAPI=5 HOMEPAGE=https://wiki.gentoo.org/wiki/Project:Portage IUSE=build doc epydoc +ipc linguas_ru selinux xattr python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 -KEYWORDS=alpha amd64 ~arm ~arm64 ~hppa ia64 ~m68k ~mips ppc ppc64 ~s390 ~sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd +KEYWORDS=alpha amd64 ~arm ~arm64 hppa ia64 ~m68k ~mips ppc ppc64 ~s390 ~sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd LICENSE=GPL-2 PDEPEND=!build? ( >=net-misc/rsync-2.6.4 userland_GNU? ( >=sys-apps/coreutils-6.4 ) ) RDEPEND=>=app-arch/tar-1.27 dev-lang/python-exec:2 !build? ( >=sys-apps/sed-4.0.5 app-shells/bash:0[readline] >=app-admin/eselect-1.2 ) elibc_FreeBSD? ( sys-freebsd/freebsd-bin ) elibc_glibc? ( >=sys-apps/sandbox-2.2 ) elibc_uclibc? ( >=sys-apps/sandbox-2.2 ) >=app-misc/pax-utils-0.1.17 selinux? ( >=sys-libs/libselinux-2.0.94[python,python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] ) xattr? ( kernel_linux? ( >=sys-apps/install-xattr-0.3 python_targets_pypy? ( dev-python/pyxattr[python_targets_pypy(-)?,-python_single_target_pypy(-),python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python_targets_python2_7? ( dev-python/pyxattr[python_targets_pypy(-)?,-python_single_target_pypy(-),python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) ) ) !=dev-lang/python-2.7.5-r2:2.7[bzip2(+),threads(+)] ) python_targets_python3_4? ( dev-lang/python:3.4[bzip2(+),threads(+)] ) python_targets_python3_5? ( dev-lang/python:3.5[bzip2(+),threads(+)] ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] @@ -12,4 +12,4 @@ REQUIRED_USE=epydoc? ( python_targets_python2_7 ) || ( python_targets_pypy pytho SLOT=0 SRC_URI=mirror://gentoo/portage-2.3.3.tar.bz2 https://dev.gentoo.org/~dolsen/releases/portage/portage-2.3.3.tar.bz2 _eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48 -_md5_=4cd9c2466098cfff553773e553349ae1 +_md5_=2d9049691a18fc2070776abac977a1e4 diff --git a/metadata/md5-cache/virtual/acl-0-r2 b/metadata/md5-cache/virtual/acl-0-r2 index 36a67398b900..29a675603824 100644 --- a/metadata/md5-cache/virtual/acl-0-r2 +++ b/metadata/md5-cache/virtual/acl-0-r2 @@ -1,9 +1,9 @@ DEFINED_PHASES=- DESCRIPTION=Virtual for acl support (sys/acl.h) -EAPI=4 +EAPI=5 IUSE=static-libs abi_x86_32 abi_x86_64 abi_x86_x32 abi_mips_n32 abi_mips_n64 abi_mips_o32 abi_ppc_32 abi_ppc_64 abi_s390_32 abi_s390_64 KEYWORDS=~alpha amd64 arm ~arm64 hppa ia64 ~m68k ~mips ppc ppc64 ~s390 ~sh sparc x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux RDEPEND=kernel_linux? ( >=sys-apps/acl-2.2.52-r1[static-libs?,abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] ) kernel_FreeBSD? ( >=sys-freebsd/freebsd-lib-9.1-r10[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] ) SLOT=0 _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multilib-build 8fe2e81aeb36cdf8a6cc5f50443879cc toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=bd019a8c2176f127a81c98429ef4fb00 +_md5_=b0d7a4a6b9833718ff5e04eb8f315333 diff --git a/metadata/md5-cache/virtual/cron-0-r1 b/metadata/md5-cache/virtual/cron-0-r1 index aa1353f47390..1eadc487b55c 100644 --- a/metadata/md5-cache/virtual/cron-0-r1 +++ b/metadata/md5-cache/virtual/cron-0-r1 @@ -1,7 +1,7 @@ DEFINED_PHASES=- DESCRIPTION=Virtual for cron -EAPI=4 +EAPI=5 KEYWORDS=alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd RDEPEND=|| ( sys-process/cronie sys-process/vixie-cron sys-process/bcron sys-process/dcron sys-process/fcron sys-process/systemd-cron ) SLOT=0 -_md5_=606a5e013858df2e5499d703a338df3f +_md5_=3cb5d3b3de74973a8ba0a3946ab9e5f7 diff --git a/metadata/md5-cache/virtual/libiconv-0-r1 b/metadata/md5-cache/virtual/libiconv-0-r1 index 8830cc44c82d..d57a682583a1 100644 --- a/metadata/md5-cache/virtual/libiconv-0-r1 +++ b/metadata/md5-cache/virtual/libiconv-0-r1 @@ -1,9 +1,9 @@ DEFINED_PHASES=- DESCRIPTION=Virtual for the GNU conversion library -EAPI=4 +EAPI=5 IUSE=elibc_glibc elibc_uclibc elibc_musl elibc_mintlib abi_x86_32 abi_x86_64 abi_x86_x32 abi_mips_n32 abi_mips_n64 abi_mips_o32 abi_ppc_32 abi_ppc_64 abi_s390_32 abi_s390_64 KEYWORDS=alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris ~x86-winnt RDEPEND=!elibc_glibc? ( !elibc_uclibc? ( !elibc_musl? ( !elibc_mintlib? ( >=dev-libs/libiconv-1.14-r1[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] ) ) ) ) SLOT=0 _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multilib-build 8fe2e81aeb36cdf8a6cc5f50443879cc toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=a745ffbc5f9706c689a8fb9420fcbf7a +_md5_=e5000cea507e393c7bd6b06e99c7df65 diff --git a/metadata/md5-cache/virtual/libiconv-0-r2 b/metadata/md5-cache/virtual/libiconv-0-r2 index 6005244814ef..2b028e7a3d3a 100644 --- a/metadata/md5-cache/virtual/libiconv-0-r2 +++ b/metadata/md5-cache/virtual/libiconv-0-r2 @@ -1,9 +1,9 @@ DEFINED_PHASES=- DESCRIPTION=Virtual for the GNU conversion library -EAPI=4 +EAPI=5 IUSE=elibc_glibc elibc_uclibc elibc_musl elibc_mintlib abi_x86_32 abi_x86_64 abi_x86_x32 abi_mips_n32 abi_mips_n64 abi_mips_o32 abi_ppc_32 abi_ppc_64 abi_s390_32 abi_s390_64 KEYWORDS=alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris ~x86-winnt RDEPEND=!elibc_glibc? ( !elibc_uclibc? ( !elibc_musl? ( !elibc_mintlib? ( || ( >=dev-libs/libiconv-1.14-r1[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] >=sys-freebsd/freebsd-lib-10.0[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] ) ) ) ) ) SLOT=0 _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multilib-build 8fe2e81aeb36cdf8a6cc5f50443879cc toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=8554fff30f9d73bf18fa06eed1c281ee +_md5_=c5952e2d0c91906e30a9837688a657ad diff --git a/metadata/md5-cache/virtual/libintl-0-r1 b/metadata/md5-cache/virtual/libintl-0-r1 index 2e9ece43622e..4f7b75138f40 100644 --- a/metadata/md5-cache/virtual/libintl-0-r1 +++ b/metadata/md5-cache/virtual/libintl-0-r1 @@ -1,9 +1,9 @@ DEFINED_PHASES=- DESCRIPTION=Virtual for the GNU Internationalization Library -EAPI=4 +EAPI=5 IUSE=elibc_glibc elibc_uclibc abi_x86_32 abi_x86_64 abi_x86_x32 abi_mips_n32 abi_mips_n64 abi_mips_o32 abi_ppc_32 abi_ppc_64 abi_s390_32 abi_s390_64 KEYWORDS=alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris RDEPEND=!elibc_glibc? ( !elibc_uclibc? ( !elibc_musl? ( >=sys-devel/gettext-0.18.3.2[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] ) ) ) SLOT=0 _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multilib-build 8fe2e81aeb36cdf8a6cc5f50443879cc toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=c9e9b6ecfe78e63477aaf6ea07e59c6e +_md5_=4e9420811101cfe3c9d0f046eff70392 diff --git a/metadata/md5-cache/virtual/libintl-0-r2 b/metadata/md5-cache/virtual/libintl-0-r2 index f4af6a67532b..e2f86834e7d7 100644 --- a/metadata/md5-cache/virtual/libintl-0-r2 +++ b/metadata/md5-cache/virtual/libintl-0-r2 @@ -6,4 +6,4 @@ KEYWORDS=alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 RDEPEND=!elibc_glibc? ( !elibc_uclibc? ( !elibc_musl? ( dev-libs/libintl[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_ppc_32(-)?,abi_ppc_64(-)?,abi_s390_32(-)?,abi_s390_64(-)?] ) ) ) SLOT=0 _eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multilib-build 8fe2e81aeb36cdf8a6cc5f50443879cc toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=59caa18ac5068c2d97818867b1b60d76 +_md5_=e827baf5996a41b597ec3066c5c8e780 diff --git a/metadata/md5-cache/virtual/mta-1 b/metadata/md5-cache/virtual/mta-1 index 4832cd3403d7..4ef2e649e172 100644 --- a/metadata/md5-cache/virtual/mta-1 +++ b/metadata/md5-cache/virtual/mta-1 @@ -1,7 +1,7 @@ DEFINED_PHASES=- DESCRIPTION=Virtual for Message Transfer Agents -EAPI=4 +EAPI=5 KEYWORDS=alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris RDEPEND=|| ( mail-mta/nullmailer mail-mta/msmtp[mta] mail-mta/ssmtp[mta] mail-mta/courier mail-mta/esmtp mail-mta/exim mail-mta/mini-qmail mail-mta/netqmail mail-mta/postfix mail-mta/qmail-ldap mail-mta/sendmail mail-mta/opensmtpd mail-mta/citadel[-postfix] ) SLOT=0 -_md5_=627050063ad5963a0f9373f2a517c255 +_md5_=98ebc2470379e40ba834caed303e4c4d diff --git a/metadata/md5-cache/www-client/opera-developer-44.0.2463.0 b/metadata/md5-cache/www-client/opera-developer-44.0.2487.0 similarity index 90% rename from metadata/md5-cache/www-client/opera-developer-44.0.2463.0 rename to metadata/md5-cache/www-client/opera-developer-44.0.2487.0 index 8f31af58bc3e..713134b3ba9f 100644 --- a/metadata/md5-cache/www-client/opera-developer-44.0.2463.0 +++ b/metadata/md5-cache/www-client/opera-developer-44.0.2487.0 @@ -7,6 +7,6 @@ KEYWORDS=~amd64 ~x86 LICENSE=OPERA-2014 RDEPEND=dev-libs/expat dev-libs/glib:2 dev-libs/nspr dev-libs/nss gnome-base/gconf:2 media-libs/alsa-lib media-libs/fontconfig media-libs/freetype net-misc/curl net-print/cups sys-apps/dbus x11-libs/cairo x11-libs/gdk-pixbuf x11-libs/gtk+:2 x11-libs/libX11 x11-libs/libXScrnSaver x11-libs/libXcomposite x11-libs/libXcursor x11-libs/libXdamage x11-libs/libXext x11-libs/libXfixes x11-libs/libXi x11-libs/libXrandr x11-libs/libXrender x11-libs/libXtst x11-libs/libnotify x11-libs/pango[X] SLOT=0 -SRC_URI=amd64? ( http://get.geo.opera.com/pub/opera-developer/44.0.2463.0/linux/opera-developer_44.0.2463.0_amd64.deb ) x86? ( http://get.geo.opera.com/pub/opera-developer/44.0.2463.0/linux/opera-developer_44.0.2463.0_i386.deb ) +SRC_URI=amd64? ( http://get.geo.opera.com/pub/opera-developer/44.0.2487.0/linux/opera-developer_44.0.2487.0_amd64.deb ) x86? ( http://get.geo.opera.com/pub/opera-developer/44.0.2487.0/linux/opera-developer_44.0.2487.0_i386.deb ) _eclasses_=chromium-2 c30f482b868782938c772c21d9ede135 eutils ea170b525f6a38a006be05c9d9429f13 linux-info af49d8ab3be91bb1d38b7201dc9e5123 multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be versionator 99ae9d758cbe7cfed19170e7d48f5a9c _md5_=405c058976927c6703053e6d519e8d3d diff --git a/metadata/news/timestamp.chk b/metadata/news/timestamp.chk index 679a2fc44b20..693ae2f18c00 100644 --- a/metadata/news/timestamp.chk +++ b/metadata/news/timestamp.chk @@ -1 +1 @@ -Tue, 31 Jan 2017 05:13:23 +0000 +Tue, 31 Jan 2017 09:43:33 +0000 diff --git a/metadata/projects.xml b/metadata/projects.xml index d9c85bee13e0..aa5550466550 100644 --- a/metadata/projects.xml +++ b/metadata/projects.xml @@ -241,6 +241,11 @@ Benda Xu Astronomy Data Processing, Dark Matter + + perfinion@gentoo.org + Jason Zaman + General maintenance + xarthisius@gentoo.org Kacper Kowalik diff --git a/metadata/timestamp b/metadata/timestamp index 0ac6f20cac0d..19c04eb6eba2 100644 --- a/metadata/timestamp +++ b/metadata/timestamp @@ -1 +1 @@ -Tue Jan 31 05:09:28 UTC 2017 +Tue Jan 31 09:39:38 UTC 2017 diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk index aa96df36480a..a25de3a35d57 100644 --- a/metadata/timestamp.chk +++ b/metadata/timestamp.chk @@ -1 +1 @@ -Tue, 31 Jan 2017 05:30:01 +0000 +Tue, 31 Jan 2017 10:00:01 +0000 diff --git a/metadata/timestamp.x b/metadata/timestamp.x index d191f0869e2c..978a7ba5c318 100644 --- a/metadata/timestamp.x +++ b/metadata/timestamp.x @@ -1 +1 @@ -1485839401 Tue 31 Jan 2017 05:10:01 AM UTC +1485855601 Tue 31 Jan 2017 09:40:01 AM UTC diff --git a/metadata/xml-schema/timestamp.chk b/metadata/xml-schema/timestamp.chk index 679a2fc44b20..693ae2f18c00 100644 --- a/metadata/xml-schema/timestamp.chk +++ b/metadata/xml-schema/timestamp.chk @@ -1 +1 @@ -Tue, 31 Jan 2017 05:13:23 +0000 +Tue, 31 Jan 2017 09:43:33 +0000 diff --git a/net-analyzer/tcpdump/tcpdump-4.9.0.ebuild b/net-analyzer/tcpdump/tcpdump-4.9.0.ebuild index 1270e357d1da..79c020509758 100644 --- a/net-analyzer/tcpdump/tcpdump-4.9.0.ebuild +++ b/net-analyzer/tcpdump/tcpdump-4.9.0.ebuild @@ -17,7 +17,7 @@ SRC_URI=" LICENSE="BSD" SLOT="0" -KEYWORDS="alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux" +KEYWORDS="alpha amd64 ~arm ~arm64 hppa ~ia64 ~mips ~ppc ppc64 ~s390 ~sh ~sparc ~x86 ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux" IUSE="+drop-root libressl smi ssl samba suid test" RDEPEND=" diff --git a/net-proxy/haproxy/Manifest b/net-proxy/haproxy/Manifest index 96f87e60f906..8e5421c43db3 100644 --- a/net-proxy/haproxy/Manifest +++ b/net-proxy/haproxy/Manifest @@ -6,3 +6,4 @@ DIST haproxy-1.6.11.tar.gz 1574029 SHA256 62fe982edb102a9f55205792bc14b0d05745cc DIST haproxy-1.6.9.tar.gz 1566715 SHA256 cf7d2fa891d2ae4aa6489fc43a9cadf68c42f9cb0de4801afad45d32e7dda133 SHA512 0060a93c628689e1ca9e5845f9f93641f7647efc176cbf093bce59be19496492c317c8101fa50dd6181b130f861c74a20199f18e41ebd6995715364b1ea46a2e WHIRLPOOL a7311cb08507898cf19a422a6a55a6d429cbb99e0329b2de0defea472314c495d6c426a973ef436d532340f95d5abee2ad07fbf1d051d36fe4618ac28b743a35 DIST haproxy-1.7.0.tar.gz 1728237 SHA256 abdce486f98c024f3df45dade4011caeb925f48129370f4754a45f1623794622 SHA512 e41c4d73e438f3975dd704de5048eb1179cfa884ae16970d868d8ae7e0958ee0ab5bd58a952113e90b89c040cb84402dafd4ae6e4daf03ea6621e03b861837c7 WHIRLPOOL a82563956cad92ccb257cfe202a43ea1cae3c2b4fa36fb954829096e55b524cbe224080669f60a8b62e38e73e682321a50a59e3d650a6b0ae340d3bf24a9768d DIST haproxy-1.7.1.tar.gz 1730401 SHA256 56a7f5e919755d9b01b64f91b497c2c4eabdbe3a6fd84f7e5192a264097d8759 SHA512 97dd81493a8902efd1b15171ace2da16f77feb537657e22c28f0ace3c05600f860e4d6f70a40f6fde8f0701e5399f8a4a7d982d4acf9cbccda6e2cf7dbe6f68e WHIRLPOOL 5bed6c02e888f2193574881be16c6bb87041438486edf73f2bcbaeda4394012d966465645c95e8a0e9fc30e3c306a327589a603e48b0dc880b6499876bb39116 +DIST haproxy-1.7.2.tar.gz 1735073 SHA256 f95b40f52a4d61feaae363c9b15bf411c16fe8f61fddb297c7afcca0072e4b2f SHA512 1db3bdc5110d84694390b357ded0700b3fc902516ae7a67902fe7dfc76f18abb3c56e0c46209f9b0e025904d62859020ee97b98680f237a2e15f03154f24fe5d WHIRLPOOL 6ffc05ca50243b2dd24b414264852fcfdda724888a00f0b987b0d6d3ef4d9df92192befa6e0e36a17aef696e96cdde6c865689ef6c27e87486d53aa094d06241 diff --git a/net-proxy/haproxy/haproxy-1.7.2.ebuild b/net-proxy/haproxy/haproxy-1.7.2.ebuild new file mode 100644 index 000000000000..3a264d33612c --- /dev/null +++ b/net-proxy/haproxy/haproxy-1.7.2.ebuild @@ -0,0 +1,166 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="6" + +[[ ${PV} == *9999 ]] && SCM="git-r3" +inherit user versionator toolchain-funcs flag-o-matic systemd linux-info $SCM + +MY_P="${PN}-${PV/_beta/-dev}" + +DESCRIPTION="A TCP/HTTP reverse proxy for high availability environments" +HOMEPAGE="http://haproxy.1wt.eu" +if [[ ${PV} != *9999 ]]; then + SRC_URI="http://haproxy.1wt.eu/download/$(get_version_component_range 1-2)/src/${MY_P}.tar.gz" + KEYWORDS="~amd64 ~arm ~ppc ~x86" +else + EGIT_REPO_URI="http://git.haproxy.org/git/haproxy-$(get_version_component_range 1-2).git/" + EGIT_BRANCH=master +fi + +LICENSE="GPL-2 LGPL-2.1" +SLOT="0" +IUSE="+crypt doc examples libressl slz net_ns +pcre pcre-jit ssl tools vim-syntax +zlib lua device-atlas 51degrees wurfl" +REQUIRED_USE="pcre-jit? ( pcre ) + device-atlas? ( pcre ) + ?? ( slz zlib )" + +DEPEND=" + pcre? ( + dev-libs/libpcre + pcre-jit? ( dev-libs/libpcre[jit] ) + ) + ssl? ( + !libressl? ( dev-libs/openssl:0=[zlib?] ) + libressl? ( dev-libs/libressl:0= ) + ) + slz? ( dev-libs/libslz:= ) + zlib? ( sys-libs/zlib ) + lua? ( dev-lang/lua:5.3 ) + device-atlas? ( dev-libs/device-atlas-api-c )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +DOCS=( CHANGELOG CONTRIBUTING MAINTAINERS README ) +version_is_at_least 1.7.0 $PV && PATCHES=( "${FILESDIR}"/haproxy-1.7-contrib.patch ) +CONTRIBS=( halog iprange ) +# ip6range is present in 1.6, but broken. +version_is_at_least 1.7.0 $PV && CONTRIBS+=( ip6range spoa_example tcploop ) + +haproxy_use() { + (( $# != 2 )) && die "${FUNCNAME} " + + usex "${1}" "USE_${2}=1" "USE_${2}=" +} + +pkg_setup() { + enewgroup haproxy + enewuser haproxy -1 -1 -1 haproxy + + if use net_ns; then + CONFIG_CHECK="~NET_NS" + linux-info_pkg_setup + fi +} + +src_prepare() { + default + + sed -e 's:@SBINDIR@:'/usr/bin':' contrib/systemd/haproxy.service.in \ + > contrib/systemd/haproxy.service || die + + sed -ie 's:/usr/sbin/haproxy:/usr/bin/haproxy:' src/haproxy-systemd-wrapper.c || die +} + +src_compile() { + local -a args=( + TARGET=linux2628 + USE_GETADDRINFO=1 + USE_TFO=1 + ) + + args+=( $(haproxy_use crypt LIBCRYPT) ) + args+=( $(haproxy_use net_ns NS) ) + args+=( $(haproxy_use pcre PCRE) ) + args+=( $(haproxy_use pcre-jit PCRE_JIT) ) + args+=( $(haproxy_use ssl OPENSSL) ) + args+=( $(haproxy_use slz SLZ) ) + args+=( $(haproxy_use zlib ZLIB) ) + args+=( $(haproxy_use lua LUA) ) + args+=( $(haproxy_use 51degrees 51DEGREES) ) + args+=( $(haproxy_use device-atlas DEVICEATLAS) ) + args+=( $(haproxy_use wurfl WURFL) ) + + # For now, until the strict-aliasing breakage will be fixed + append-cflags -fno-strict-aliasing + + emake CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" CC=$(tc-getCC) ${args[@]} + + if use tools ; then + for contrib in ${CONTRIBS[@]} ; do + emake -C contrib/${contrib} \ + CFLAGS="${CFLAGS}" OPTIMIZE="${CFLAGS}" LDFLAGS="${LDFLAGS}" CC=$(tc-getCC) ${args[@]} + done + fi +} + +src_install() { + dobin haproxy + + newconfd "${FILESDIR}/${PN}.confd" $PN + newinitd "${FILESDIR}/${PN}.initd-r3" $PN + + doman doc/haproxy.1 + + dobin haproxy-systemd-wrapper + systemd_dounit contrib/systemd/haproxy.service + + einstalldocs + + # The errorfiles are used by upstream defaults. + insinto /etc/haproxy/errors/ + doins examples/errorfiles/* + + if use doc; then + dodoc ROADMAP doc/*.txt + #if use lua; then + # TODO: doc/lua-api/ + #fi + fi + + if use tools ; then + has halog "${CONTRIBS[@]}" && dobin contrib/halog/halog + has "iprange" "${CONTRIBS[@]}" && newbin contrib/iprange/iprange haproxy_iprange + has "ip6range" "${CONTRIBS[@]}" && newbin contrib/ip6range/ip6range haproxy_ip6range + has "spoa_example" "${CONTRIBS[@]}" && newbin contrib/spoa_example/spoa haproxy_spoa_example + has "spoa_example" "${CONTRIBS[@]}" && newdoc contrib/spoa_example/README README.spoa_example + has "tcploop" "${CONTRIBS[@]}" && newbin contrib/tcploop/tcploop haproxy_tcploop + fi + + if use examples ; then + docinto examples + dodoc examples/*.cfg + dodoc examples/seamless_reload.txt + fi + + if use vim-syntax ; then + insinto /usr/share/vim/vimfiles/syntax + doins examples/haproxy.vim + fi +} + +pkg_postinst() { + if [[ ! -f "${EROOT}/etc/haproxy/haproxy.cfg" ]] ; then + ewarn "You need to create /etc/haproxy/haproxy.cfg before you start the haproxy service." + ewarn "It's best practice to not run haproxy as root, user and group haproxy was therefore created." + ewarn "Make use of them with the \"user\" and \"group\" directives." + + if [[ -d "${EROOT}/usr/share/doc/${PF}" ]]; then + einfo "Please consult the installed documentation for learning the configuration file's syntax." + einfo "The documentation and sample configuration files are installed here:" + einfo " ${EROOT}usr/share/doc/${PF}" + fi + fi +} diff --git a/net-proxy/squid/Manifest b/net-proxy/squid/Manifest index 2b7a55ef84c9..ca37c26988bc 100644 --- a/net-proxy/squid/Manifest +++ b/net-proxy/squid/Manifest @@ -1,5 +1 @@ -DIST squid-3.5.19.tar.xz 2318720 SHA256 c4b8a2efb85acc600e506605f175298ce3324048e60f4708926d354fe4b5c7a0 SHA512 b2e70845d87a3a3d57b8ff08c6fb21137cedc75c8076a8e004a4b4031a7045d13f13de2b2aa98435e39770aefe1db838538ed62fc4169f83797c99fc0883f650 WHIRLPOOL 73ce9e63bbf5d494ff40b2379930e2723f01507782b3c332ea0e2b3d1c813c914fdfea47d22f9b004d0bac5a826928b5e47fa0fdb190c2be5235e1c51c25c575 -DIST squid-3.5.20.tar.xz 2319780 SHA256 37db73bd33ddd3503fe375bc3f2b47d9fb7309042e439ad3651f21d5dcf2d395 SHA512 555e456d63bfe506e1cb84cd4857e900648382613181ff7fb70026e37d224b9b125b49e0a2e12cca63377427d33be7e9fbc3755c66a5370eab975e6ab3444bee WHIRLPOOL 37f8805e8601868cc6917e3d755ac6a42781267751379ef4f71bd3586a81292efceadd3c00defe8050c8f2e84b8dd2a81c167b3f0bb57e08517af9668e7f2147 -DIST squid-3.5.21.tar.xz 2320896 SHA256 6fb537a1e4d746276e60856acd2398f88aab94ebd476ae2cc2bf16af5c7cc251 SHA512 17c541062c785effe091cedca7c5133f20280bf8a83efe0f04778a85b44d16c695f374cb8721c2fb4a241d4c7065f132e9e6bf7deca858944b22397fbf22b301 WHIRLPOOL 8b3de7de4d869cf6e9470063d2560ff1c96a0944fe996362258235db3314b15065243dc9f226d637545a523a2523a20a02b507bca5e521ca833fc1f5c27c4616 -DIST squid-3.5.22.tar.xz 2324164 SHA256 1ce95b469257abeb2ed8a1c0417812301c1ef5a4cc40ca504167daa470ad9358 SHA512 40925c8b4d7b05a580397b1adf24457b66514eea2e05c0685251370aea3e48e0ac52b36ec9ec5ef5b1564ac46fec89bc8842e24cced413b9f3b24eb7778f6ba5 WHIRLPOOL 041ccfceb4e4111254ffb410008b727a87551827a726865b5860e9f506afcaf4f76331845e2a1b291fef4db6f4f1e042da48be03a18d667a5b917a5b2ccb76a6 DIST squid-3.5.23.tar.xz 2325884 SHA256 fa4c0c99f41e92fe1330bed3968d176c6f47ef2e3aea2f83977d5501afa40bdb SHA512 3f2b3df60fc0b2aab3d0d9e3489832d60d0aac8222f09ad2ff6afb95202b904f41f6530d713e7ce446c6f62b66f0cd792a6b12005d43c53fe68d2371f9caa880 WHIRLPOOL 39338be97e3357759b9062e3c3b353a2118ca910e56584e73560489078e76a42b230ac24468ea62f6e3df7de210492beda54b0c178804c097d4b303d16cd2914 diff --git a/net-proxy/squid/squid-3.5.19.ebuild b/net-proxy/squid/squid-3.5.19.ebuild deleted file mode 100644 index 63f6a1562e9f..000000000000 --- a/net-proxy/squid/squid-3.5.19.ebuild +++ /dev/null @@ -1,238 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 -inherit autotools linux-info pam toolchain-funcs user - -DESCRIPTION="A full-featured web proxy cache" -HOMEPAGE="http://www.squid-cache.org/" -SRC_URI="http://www.squid-cache.org/Versions/v3/3.5/${P}.tar.xz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="alpha amd64 arm hppa ia64 ~mips ppc ppc64 sparc x86 ~x86-fbsd" -IUSE="caps ipv6 pam ldap samba sasl kerberos nis radius ssl snmp selinux logrotate test \ - ecap esi ssl-crtd \ - mysql postgres sqlite \ - qos tproxy \ - +htcp +wccp +wccpv2 \ - pf-transparent ipf-transparent kqueue \ - elibc_uclibc kernel_linux" - -COMMON_DEPEND="caps? ( >=sys-libs/libcap-2.16 ) - pam? ( virtual/pam ) - ldap? ( net-nds/openldap ) - kerberos? ( virtual/krb5 ) - qos? ( net-libs/libnetfilter_conntrack ) - ssl? ( dev-libs/openssl:0 dev-libs/nettle >=net-libs/gnutls-3.1.5 ) - sasl? ( dev-libs/cyrus-sasl ) - ecap? ( net-libs/libecap:1 ) - esi? ( dev-libs/expat dev-libs/libxml2 ) - !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) - >=sys-libs/db-4:* - dev-lang/perl - dev-libs/libltdl:0" -DEPEND="${COMMON_DEPEND} - ecap? ( virtual/pkgconfig ) - test? ( dev-util/cppunit )" -RDEPEND="${COMMON_DEPEND} - samba? ( net-fs/samba ) - mysql? ( dev-perl/DBD-mysql ) - postgres? ( dev-perl/DBD-Pg ) - selinux? ( sec-policy/selinux-squid ) - sqlite? ( dev-perl/DBD-SQLite ) - !<=sci-biology/meme-4.8.1-r1" - -REQUIRED_USE="tproxy? ( caps ) - qos? ( caps )" - -pkg_pretend() { - if use tproxy; then - local CONFIG_CHECK="~NF_CONNTRACK ~NETFILTER_XT_MATCH_SOCKET ~NETFILTER_XT_TARGET_TPROXY" - linux-info_pkg_setup - fi -} - -pkg_setup() { - enewgroup squid - enewuser squid -1 -1 /var/cache/squid squid -} - -src_prepare() { - eapply "${FILESDIR}/${PN}-3.5.7-gentoo.patch" - sed -i -e 's:/usr/local/squid/etc:/etc/squid:' \ - INSTALL QUICKSTART \ - scripts/fileno-to-pathname.pl \ - scripts/check_cache.pl \ - tools/cachemgr.cgi.8 \ - tools/purge/conffile.hh \ - tools/purge/README || die - sed -i -e 's:/usr/local/squid/sbin:/usr/sbin:' \ - INSTALL QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/cache:/var/cache/squid:' \ - QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/logs:/var/log/squid:' \ - QUICKSTART \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/logs:/var/log/squid:' \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/libexec:/usr/libexec/squid:' \ - helpers/external_acl/unix_group/ext_unix_group_acl.8 \ - helpers/external_acl/session/ext_session_acl.8 \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/cache:/var/cache/squid:' \ - scripts/check_cache.pl || die - sed -i -e 's:/usr/local/squid/ssl_cert:/etc/ssl/squid:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - # /var/run/squid to /run/squid - sed -i -e 's:$(localstatedir)::' \ - src/ipc/Makefile.am || die - sed -i -e 's:_LTDL_SETUP:LTDL_INIT([installable]):' \ - libltdl/configure.ac || die - - eapply_user - eautoreconf -} - -src_configure() { - local basic_modules="MSNT-multi-domain,NCSA,POP3,getpwnam" - use samba && basic_modules+=",SMB" - use ldap && basic_modules+=",LDAP" - use pam && basic_modules+=",PAM" - use sasl && basic_modules+=",SASL" - use nis && ! use elibc_uclibc && basic_modules+=",NIS" - use radius && basic_modules+=",RADIUS" - if use mysql || use postgres || use sqlite ; then - basic_modules+=",DB" - fi - - local digest_modules="file" - use ldap && digest_modules+=",LDAP,eDirectory" - - local negotiate_modules="none" - local myconf="--without-mit-krb5 --without-heimdal-krb5" - if use kerberos ; then - negotiate_modules="kerberos,wrapper" - if has_version app-crypt/heimdal ; then - myconf="--without-mit-krb5 --with-heimdal-krb5" - else - myconf="--with-mit-krb5 --without-heimdal-krb5" - fi - fi - - local ntlm_modules="none" - use samba && ntlm_modules="smb_lm" - - local ext_helpers="file_userip,session,unix_group" - use samba && ext_helpers+=",wbinfo_group" - use ldap && ext_helpers+=",LDAP_group,eDirectory_userip" - use ldap && use kerberos && ext_helpers+=",kerberos_ldap_group" - - local storeio_modules="aufs,diskd,rock,ufs" - - local transparent - if use kernel_linux ; then - transparent+=" --enable-linux-netfilter" - use qos && transparent+=" --enable-zph-qos --with-netfilter-conntrack" - fi - - if use kernel_FreeBSD || use kernel_OpenBSD || use kernel_NetBSD ; then - transparent+=" $(use_enable kqueue)" - if use pf-transparent; then - transparent+=" --enable-pf-transparent" - elif use ipf-transparent; then - transparent+=" --enable-ipf-transparent" - fi - fi - - tc-export CC AR - - econf \ - --sysconfdir=/etc/squid \ - --libexecdir=/usr/libexec/squid \ - --localstatedir=/var \ - --with-pidfile=/run/squid.pid \ - --datadir=/usr/share/squid \ - --with-logdir=/var/log/squid \ - --with-default-user=squid \ - --enable-removal-policies="lru,heap" \ - --enable-storeio="${storeio_modules}" \ - --enable-disk-io \ - --enable-auth-basic="${basic_modules}" \ - --enable-auth-digest="${digest_modules}" \ - --enable-auth-ntlm="${ntlm_modules}" \ - --enable-auth-negotiate="${negotiate_modules}" \ - --enable-external-acl-helpers="${ext_helpers}" \ - --enable-log-daemon-helpers \ - --enable-url-rewrite-helpers \ - --enable-cache-digests \ - --enable-delay-pools \ - --enable-eui \ - --enable-icmp \ - --enable-follow-x-forwarded-for \ - --with-large-files \ - --disable-strict-error-checking \ - --disable-arch-native \ - --with-ltdl-includedir=/usr/include \ - --with-ltdl-libdir=/usr/$(get_libdir) \ - $(use_with caps libcap) \ - $(use_enable ipv6) \ - $(use_enable snmp) \ - $(use_with ssl openssl) \ - $(use_with ssl nettle) \ - $(use_with ssl gnutls) \ - $(use_enable ssl-crtd) \ - $(use_enable ecap) \ - $(use_enable esi) \ - $(use_enable htcp) \ - $(use_enable wccp) \ - $(use_enable wccpv2) \ - ${transparent} \ - ${myconf} -} - -src_install() { - emake DESTDIR="${D}" install - - # need suid root for looking into /etc/shadow - fowners root:squid /usr/libexec/squid/basic_ncsa_auth - fperms 4750 /usr/libexec/squid/basic_ncsa_auth - if use pam; then - fowners root:squid /usr/libexec/squid/basic_pam_auth - fperms 4750 /usr/libexec/squid/basic_pam_auth - fi - # pinger needs suid as well - fowners root:squid /usr/libexec/squid/pinger - fperms 4750 /usr/libexec/squid/pinger - - # cleanup - rm -f "${D}"/usr/bin/Run* - rm -rf "${D}"/run/squid "${D}"/var/cache/squid - - dodoc CONTRIBUTORS CREDITS ChangeLog INSTALL QUICKSTART README SPONSORS doc/*.txt - newdoc helpers/negotiate_auth/kerberos/README README.kerberos - newdoc helpers/basic_auth/RADIUS/README README.RADIUS - newdoc helpers/external_acl/kerberos_ldap_group/README README.kerberos_ldap_group - newdoc tools/purge/README README.purge - newdoc tools/helper-mux.README README.helper-mux - dodoc RELEASENOTES.html - - newpamd "${FILESDIR}/squid.pam" squid - newconfd "${FILESDIR}/squid.confd-r1" squid - newinitd "${FILESDIR}/squid.initd-r4" squid - if use logrotate; then - insinto /etc/logrotate.d - newins "${FILESDIR}/squid.logrotate" squid - else - exeinto /etc/cron.weekly - newexe "${FILESDIR}/squid.cron" squid.cron - fi - - diropts -m0750 -o squid -g squid - keepdir /var/log/squid /etc/ssl/squid /var/lib/squid -} diff --git a/net-proxy/squid/squid-3.5.20.ebuild b/net-proxy/squid/squid-3.5.20.ebuild deleted file mode 100644 index eee7b6d29343..000000000000 --- a/net-proxy/squid/squid-3.5.20.ebuild +++ /dev/null @@ -1,238 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 -inherit autotools linux-info pam toolchain-funcs user - -DESCRIPTION="A full-featured web proxy cache" -HOMEPAGE="http://www.squid-cache.org/" -SRC_URI="http://www.squid-cache.org/Versions/v3/3.5/${P}.tar.xz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd" -IUSE="caps ipv6 pam ldap samba sasl kerberos nis radius ssl snmp selinux logrotate test \ - ecap esi ssl-crtd \ - mysql postgres sqlite \ - qos tproxy \ - +htcp +wccp +wccpv2 \ - pf-transparent ipf-transparent kqueue \ - elibc_uclibc kernel_linux" - -COMMON_DEPEND="caps? ( >=sys-libs/libcap-2.16 ) - pam? ( virtual/pam ) - ldap? ( net-nds/openldap ) - kerberos? ( virtual/krb5 ) - qos? ( net-libs/libnetfilter_conntrack ) - ssl? ( dev-libs/openssl:0 dev-libs/nettle >=net-libs/gnutls-3.1.5 ) - sasl? ( dev-libs/cyrus-sasl ) - ecap? ( net-libs/libecap:1 ) - esi? ( dev-libs/expat dev-libs/libxml2 ) - !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) - >=sys-libs/db-4:* - dev-lang/perl - dev-libs/libltdl:0" -DEPEND="${COMMON_DEPEND} - ecap? ( virtual/pkgconfig ) - test? ( dev-util/cppunit )" -RDEPEND="${COMMON_DEPEND} - samba? ( net-fs/samba ) - mysql? ( dev-perl/DBD-mysql ) - postgres? ( dev-perl/DBD-Pg ) - selinux? ( sec-policy/selinux-squid ) - sqlite? ( dev-perl/DBD-SQLite ) - !<=sci-biology/meme-4.8.1-r1" - -REQUIRED_USE="tproxy? ( caps ) - qos? ( caps )" - -pkg_pretend() { - if use tproxy; then - local CONFIG_CHECK="~NF_CONNTRACK ~NETFILTER_XT_MATCH_SOCKET ~NETFILTER_XT_TARGET_TPROXY" - linux-info_pkg_setup - fi -} - -pkg_setup() { - enewgroup squid - enewuser squid -1 -1 /var/cache/squid squid -} - -src_prepare() { - eapply "${FILESDIR}/${PN}-3.5.7-gentoo.patch" - sed -i -e 's:/usr/local/squid/etc:/etc/squid:' \ - INSTALL QUICKSTART \ - scripts/fileno-to-pathname.pl \ - scripts/check_cache.pl \ - tools/cachemgr.cgi.8 \ - tools/purge/conffile.hh \ - tools/purge/README || die - sed -i -e 's:/usr/local/squid/sbin:/usr/sbin:' \ - INSTALL QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/cache:/var/cache/squid:' \ - QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/logs:/var/log/squid:' \ - QUICKSTART \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/logs:/var/log/squid:' \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/libexec:/usr/libexec/squid:' \ - helpers/external_acl/unix_group/ext_unix_group_acl.8 \ - helpers/external_acl/session/ext_session_acl.8 \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/cache:/var/cache/squid:' \ - scripts/check_cache.pl || die - sed -i -e 's:/usr/local/squid/ssl_cert:/etc/ssl/squid:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - # /var/run/squid to /run/squid - sed -i -e 's:$(localstatedir)::' \ - src/ipc/Makefile.am || die - sed -i -e 's:_LTDL_SETUP:LTDL_INIT([installable]):' \ - libltdl/configure.ac || die - - eapply_user - eautoreconf -} - -src_configure() { - local basic_modules="MSNT-multi-domain,NCSA,POP3,getpwnam" - use samba && basic_modules+=",SMB" - use ldap && basic_modules+=",LDAP" - use pam && basic_modules+=",PAM" - use sasl && basic_modules+=",SASL" - use nis && ! use elibc_uclibc && basic_modules+=",NIS" - use radius && basic_modules+=",RADIUS" - if use mysql || use postgres || use sqlite ; then - basic_modules+=",DB" - fi - - local digest_modules="file" - use ldap && digest_modules+=",LDAP,eDirectory" - - local negotiate_modules="none" - local myconf="--without-mit-krb5 --without-heimdal-krb5" - if use kerberos ; then - negotiate_modules="kerberos,wrapper" - if has_version app-crypt/heimdal ; then - myconf="--without-mit-krb5 --with-heimdal-krb5" - else - myconf="--with-mit-krb5 --without-heimdal-krb5" - fi - fi - - local ntlm_modules="none" - use samba && ntlm_modules="smb_lm" - - local ext_helpers="file_userip,session,unix_group" - use samba && ext_helpers+=",wbinfo_group" - use ldap && ext_helpers+=",LDAP_group,eDirectory_userip" - use ldap && use kerberos && ext_helpers+=",kerberos_ldap_group" - - local storeio_modules="aufs,diskd,rock,ufs" - - local transparent - if use kernel_linux ; then - transparent+=" --enable-linux-netfilter" - use qos && transparent+=" --enable-zph-qos --with-netfilter-conntrack" - fi - - if use kernel_FreeBSD || use kernel_OpenBSD || use kernel_NetBSD ; then - transparent+=" $(use_enable kqueue)" - if use pf-transparent; then - transparent+=" --enable-pf-transparent" - elif use ipf-transparent; then - transparent+=" --enable-ipf-transparent" - fi - fi - - tc-export CC AR - - econf \ - --sysconfdir=/etc/squid \ - --libexecdir=/usr/libexec/squid \ - --localstatedir=/var \ - --with-pidfile=/run/squid.pid \ - --datadir=/usr/share/squid \ - --with-logdir=/var/log/squid \ - --with-default-user=squid \ - --enable-removal-policies="lru,heap" \ - --enable-storeio="${storeio_modules}" \ - --enable-disk-io \ - --enable-auth-basic="${basic_modules}" \ - --enable-auth-digest="${digest_modules}" \ - --enable-auth-ntlm="${ntlm_modules}" \ - --enable-auth-negotiate="${negotiate_modules}" \ - --enable-external-acl-helpers="${ext_helpers}" \ - --enable-log-daemon-helpers \ - --enable-url-rewrite-helpers \ - --enable-cache-digests \ - --enable-delay-pools \ - --enable-eui \ - --enable-icmp \ - --enable-follow-x-forwarded-for \ - --with-large-files \ - --disable-strict-error-checking \ - --disable-arch-native \ - --with-ltdl-includedir=/usr/include \ - --with-ltdl-libdir=/usr/$(get_libdir) \ - $(use_with caps libcap) \ - $(use_enable ipv6) \ - $(use_enable snmp) \ - $(use_with ssl openssl) \ - $(use_with ssl nettle) \ - $(use_with ssl gnutls) \ - $(use_enable ssl-crtd) \ - $(use_enable ecap) \ - $(use_enable esi) \ - $(use_enable htcp) \ - $(use_enable wccp) \ - $(use_enable wccpv2) \ - ${transparent} \ - ${myconf} -} - -src_install() { - emake DESTDIR="${D}" install - - # need suid root for looking into /etc/shadow - fowners root:squid /usr/libexec/squid/basic_ncsa_auth - fperms 4750 /usr/libexec/squid/basic_ncsa_auth - if use pam; then - fowners root:squid /usr/libexec/squid/basic_pam_auth - fperms 4750 /usr/libexec/squid/basic_pam_auth - fi - # pinger needs suid as well - fowners root:squid /usr/libexec/squid/pinger - fperms 4750 /usr/libexec/squid/pinger - - # cleanup - rm -f "${D}"/usr/bin/Run* - rm -rf "${D}"/run/squid "${D}"/var/cache/squid - - dodoc CONTRIBUTORS CREDITS ChangeLog INSTALL QUICKSTART README SPONSORS doc/*.txt - newdoc helpers/negotiate_auth/kerberos/README README.kerberos - newdoc helpers/basic_auth/RADIUS/README README.RADIUS - newdoc helpers/external_acl/kerberos_ldap_group/README README.kerberos_ldap_group - newdoc tools/purge/README README.purge - newdoc tools/helper-mux.README README.helper-mux - dodoc RELEASENOTES.html - - newpamd "${FILESDIR}/squid.pam" squid - newconfd "${FILESDIR}/squid.confd-r1" squid - newinitd "${FILESDIR}/squid.initd-r4" squid - if use logrotate; then - insinto /etc/logrotate.d - newins "${FILESDIR}/squid.logrotate" squid - else - exeinto /etc/cron.weekly - newexe "${FILESDIR}/squid.cron" squid.cron - fi - - diropts -m0750 -o squid -g squid - keepdir /var/log/squid /etc/ssl/squid /var/lib/squid -} diff --git a/net-proxy/squid/squid-3.5.21.ebuild b/net-proxy/squid/squid-3.5.21.ebuild deleted file mode 100644 index d2965c6625cf..000000000000 --- a/net-proxy/squid/squid-3.5.21.ebuild +++ /dev/null @@ -1,241 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 -inherit autotools linux-info pam toolchain-funcs user - -DESCRIPTION="A full-featured web proxy cache" -HOMEPAGE="http://www.squid-cache.org/" -SRC_URI="http://www.squid-cache.org/Versions/v3/3.5/${P}.tar.xz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd" -IUSE="caps ipv6 pam ldap libressl samba sasl kerberos nis radius ssl snmp selinux logrotate test \ - ecap esi ssl-crtd \ - mysql postgres sqlite \ - qos tproxy \ - +htcp +wccp +wccpv2 \ - pf-transparent ipf-transparent kqueue \ - elibc_uclibc kernel_linux" - -COMMON_DEPEND="caps? ( >=sys-libs/libcap-2.16 ) - pam? ( virtual/pam ) - ldap? ( net-nds/openldap ) - kerberos? ( virtual/krb5 ) - qos? ( net-libs/libnetfilter_conntrack ) - ssl? ( - libressl? ( dev-libs/libressl:0 ) - !libressl? ( dev-libs/openssl:0 ) - dev-libs/nettle >=net-libs/gnutls-3.1.5 ) - sasl? ( dev-libs/cyrus-sasl ) - ecap? ( net-libs/libecap:1 ) - esi? ( dev-libs/expat dev-libs/libxml2 ) - !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) - >=sys-libs/db-4:* - dev-lang/perl - dev-libs/libltdl:0" -DEPEND="${COMMON_DEPEND} - ecap? ( virtual/pkgconfig ) - test? ( dev-util/cppunit )" -RDEPEND="${COMMON_DEPEND} - samba? ( net-fs/samba ) - mysql? ( dev-perl/DBD-mysql ) - postgres? ( dev-perl/DBD-Pg ) - selinux? ( sec-policy/selinux-squid ) - sqlite? ( dev-perl/DBD-SQLite ) - !<=sci-biology/meme-4.8.1-r1" - -REQUIRED_USE="tproxy? ( caps ) - qos? ( caps )" - -pkg_pretend() { - if use tproxy; then - local CONFIG_CHECK="~NF_CONNTRACK ~NETFILTER_XT_MATCH_SOCKET ~NETFILTER_XT_TARGET_TPROXY" - linux-info_pkg_setup - fi -} - -pkg_setup() { - enewgroup squid - enewuser squid -1 -1 /var/cache/squid squid -} - -src_prepare() { - eapply "${FILESDIR}/${PN}-3.5.7-gentoo.patch" - sed -i -e 's:/usr/local/squid/etc:/etc/squid:' \ - INSTALL QUICKSTART \ - scripts/fileno-to-pathname.pl \ - scripts/check_cache.pl \ - tools/cachemgr.cgi.8 \ - tools/purge/conffile.hh \ - tools/purge/README || die - sed -i -e 's:/usr/local/squid/sbin:/usr/sbin:' \ - INSTALL QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/cache:/var/cache/squid:' \ - QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/logs:/var/log/squid:' \ - QUICKSTART \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/logs:/var/log/squid:' \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/libexec:/usr/libexec/squid:' \ - helpers/external_acl/unix_group/ext_unix_group_acl.8 \ - helpers/external_acl/session/ext_session_acl.8 \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/cache:/var/cache/squid:' \ - scripts/check_cache.pl || die - sed -i -e 's:/usr/local/squid/ssl_cert:/etc/ssl/squid:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - # /var/run/squid to /run/squid - sed -i -e 's:$(localstatedir)::' \ - src/ipc/Makefile.am || die - sed -i -e 's:_LTDL_SETUP:LTDL_INIT([installable]):' \ - libltdl/configure.ac || die - - eapply_user - eautoreconf -} - -src_configure() { - local basic_modules="MSNT-multi-domain,NCSA,POP3,getpwnam" - use samba && basic_modules+=",SMB" - use ldap && basic_modules+=",LDAP" - use pam && basic_modules+=",PAM" - use sasl && basic_modules+=",SASL" - use nis && ! use elibc_uclibc && basic_modules+=",NIS" - use radius && basic_modules+=",RADIUS" - if use mysql || use postgres || use sqlite ; then - basic_modules+=",DB" - fi - - local digest_modules="file" - use ldap && digest_modules+=",LDAP,eDirectory" - - local negotiate_modules="none" - local myconf="--without-mit-krb5 --without-heimdal-krb5" - if use kerberos ; then - negotiate_modules="kerberos,wrapper" - if has_version app-crypt/heimdal ; then - myconf="--without-mit-krb5 --with-heimdal-krb5" - else - myconf="--with-mit-krb5 --without-heimdal-krb5" - fi - fi - - local ntlm_modules="none" - use samba && ntlm_modules="smb_lm" - - local ext_helpers="file_userip,session,unix_group" - use samba && ext_helpers+=",wbinfo_group" - use ldap && ext_helpers+=",LDAP_group,eDirectory_userip" - use ldap && use kerberos && ext_helpers+=",kerberos_ldap_group" - - local storeio_modules="aufs,diskd,rock,ufs" - - local transparent - if use kernel_linux ; then - transparent+=" --enable-linux-netfilter" - use qos && transparent+=" --enable-zph-qos --with-netfilter-conntrack" - fi - - if use kernel_FreeBSD || use kernel_OpenBSD || use kernel_NetBSD ; then - transparent+=" $(use_enable kqueue)" - if use pf-transparent; then - transparent+=" --enable-pf-transparent" - elif use ipf-transparent; then - transparent+=" --enable-ipf-transparent" - fi - fi - - tc-export CC AR - - econf \ - --sysconfdir=/etc/squid \ - --libexecdir=/usr/libexec/squid \ - --localstatedir=/var \ - --with-pidfile=/run/squid.pid \ - --datadir=/usr/share/squid \ - --with-logdir=/var/log/squid \ - --with-default-user=squid \ - --enable-removal-policies="lru,heap" \ - --enable-storeio="${storeio_modules}" \ - --enable-disk-io \ - --enable-auth-basic="${basic_modules}" \ - --enable-auth-digest="${digest_modules}" \ - --enable-auth-ntlm="${ntlm_modules}" \ - --enable-auth-negotiate="${negotiate_modules}" \ - --enable-external-acl-helpers="${ext_helpers}" \ - --enable-log-daemon-helpers \ - --enable-url-rewrite-helpers \ - --enable-cache-digests \ - --enable-delay-pools \ - --enable-eui \ - --enable-icmp \ - --enable-follow-x-forwarded-for \ - --with-large-files \ - --disable-strict-error-checking \ - --disable-arch-native \ - --with-ltdl-includedir=/usr/include \ - --with-ltdl-libdir=/usr/$(get_libdir) \ - $(use_with caps libcap) \ - $(use_enable ipv6) \ - $(use_enable snmp) \ - $(use_with ssl openssl) \ - $(use_with ssl nettle) \ - $(use_with ssl gnutls) \ - $(use_enable ssl-crtd) \ - $(use_enable ecap) \ - $(use_enable esi) \ - $(use_enable htcp) \ - $(use_enable wccp) \ - $(use_enable wccpv2) \ - ${transparent} \ - ${myconf} -} - -src_install() { - emake DESTDIR="${D}" install - - # need suid root for looking into /etc/shadow - fowners root:squid /usr/libexec/squid/basic_ncsa_auth - fperms 4750 /usr/libexec/squid/basic_ncsa_auth - if use pam; then - fowners root:squid /usr/libexec/squid/basic_pam_auth - fperms 4750 /usr/libexec/squid/basic_pam_auth - fi - # pinger needs suid as well - fowners root:squid /usr/libexec/squid/pinger - fperms 4750 /usr/libexec/squid/pinger - - # cleanup - rm -f "${D}"/usr/bin/Run* - rm -rf "${D}"/run/squid "${D}"/var/cache/squid - - dodoc CONTRIBUTORS CREDITS ChangeLog INSTALL QUICKSTART README SPONSORS doc/*.txt - newdoc helpers/negotiate_auth/kerberos/README README.kerberos - newdoc helpers/basic_auth/RADIUS/README README.RADIUS - newdoc helpers/external_acl/kerberos_ldap_group/README README.kerberos_ldap_group - newdoc tools/purge/README README.purge - newdoc tools/helper-mux.README README.helper-mux - dodoc RELEASENOTES.html - - newpamd "${FILESDIR}/squid.pam" squid - newconfd "${FILESDIR}/squid.confd-r1" squid - newinitd "${FILESDIR}/squid.initd-r4" squid - if use logrotate; then - insinto /etc/logrotate.d - newins "${FILESDIR}/squid.logrotate" squid - else - exeinto /etc/cron.weekly - newexe "${FILESDIR}/squid.cron" squid.cron - fi - - diropts -m0750 -o squid -g squid - keepdir /var/log/squid /etc/ssl/squid /var/lib/squid -} diff --git a/net-proxy/squid/squid-3.5.22.ebuild b/net-proxy/squid/squid-3.5.22.ebuild deleted file mode 100644 index d2965c6625cf..000000000000 --- a/net-proxy/squid/squid-3.5.22.ebuild +++ /dev/null @@ -1,241 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 -inherit autotools linux-info pam toolchain-funcs user - -DESCRIPTION="A full-featured web proxy cache" -HOMEPAGE="http://www.squid-cache.org/" -SRC_URI="http://www.squid-cache.org/Versions/v3/3.5/${P}.tar.xz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd" -IUSE="caps ipv6 pam ldap libressl samba sasl kerberos nis radius ssl snmp selinux logrotate test \ - ecap esi ssl-crtd \ - mysql postgres sqlite \ - qos tproxy \ - +htcp +wccp +wccpv2 \ - pf-transparent ipf-transparent kqueue \ - elibc_uclibc kernel_linux" - -COMMON_DEPEND="caps? ( >=sys-libs/libcap-2.16 ) - pam? ( virtual/pam ) - ldap? ( net-nds/openldap ) - kerberos? ( virtual/krb5 ) - qos? ( net-libs/libnetfilter_conntrack ) - ssl? ( - libressl? ( dev-libs/libressl:0 ) - !libressl? ( dev-libs/openssl:0 ) - dev-libs/nettle >=net-libs/gnutls-3.1.5 ) - sasl? ( dev-libs/cyrus-sasl ) - ecap? ( net-libs/libecap:1 ) - esi? ( dev-libs/expat dev-libs/libxml2 ) - !x86-fbsd? ( logrotate? ( app-admin/logrotate ) ) - >=sys-libs/db-4:* - dev-lang/perl - dev-libs/libltdl:0" -DEPEND="${COMMON_DEPEND} - ecap? ( virtual/pkgconfig ) - test? ( dev-util/cppunit )" -RDEPEND="${COMMON_DEPEND} - samba? ( net-fs/samba ) - mysql? ( dev-perl/DBD-mysql ) - postgres? ( dev-perl/DBD-Pg ) - selinux? ( sec-policy/selinux-squid ) - sqlite? ( dev-perl/DBD-SQLite ) - !<=sci-biology/meme-4.8.1-r1" - -REQUIRED_USE="tproxy? ( caps ) - qos? ( caps )" - -pkg_pretend() { - if use tproxy; then - local CONFIG_CHECK="~NF_CONNTRACK ~NETFILTER_XT_MATCH_SOCKET ~NETFILTER_XT_TARGET_TPROXY" - linux-info_pkg_setup - fi -} - -pkg_setup() { - enewgroup squid - enewuser squid -1 -1 /var/cache/squid squid -} - -src_prepare() { - eapply "${FILESDIR}/${PN}-3.5.7-gentoo.patch" - sed -i -e 's:/usr/local/squid/etc:/etc/squid:' \ - INSTALL QUICKSTART \ - scripts/fileno-to-pathname.pl \ - scripts/check_cache.pl \ - tools/cachemgr.cgi.8 \ - tools/purge/conffile.hh \ - tools/purge/README || die - sed -i -e 's:/usr/local/squid/sbin:/usr/sbin:' \ - INSTALL QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/cache:/var/cache/squid:' \ - QUICKSTART || die - sed -i -e 's:/usr/local/squid/var/logs:/var/log/squid:' \ - QUICKSTART \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/logs:/var/log/squid:' \ - src/log/access_log.cc || die - sed -i -e 's:/usr/local/squid/libexec:/usr/libexec/squid:' \ - helpers/external_acl/unix_group/ext_unix_group_acl.8 \ - helpers/external_acl/session/ext_session_acl.8 \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/cache:/var/cache/squid:' \ - scripts/check_cache.pl || die - sed -i -e 's:/usr/local/squid/ssl_cert:/etc/ssl/squid:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/usr/local/squid/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - sed -i -e 's:/var/lib/ssl_db:/var/lib/squid/ssl_db:' \ - src/ssl/ssl_crtd.8 || die - # /var/run/squid to /run/squid - sed -i -e 's:$(localstatedir)::' \ - src/ipc/Makefile.am || die - sed -i -e 's:_LTDL_SETUP:LTDL_INIT([installable]):' \ - libltdl/configure.ac || die - - eapply_user - eautoreconf -} - -src_configure() { - local basic_modules="MSNT-multi-domain,NCSA,POP3,getpwnam" - use samba && basic_modules+=",SMB" - use ldap && basic_modules+=",LDAP" - use pam && basic_modules+=",PAM" - use sasl && basic_modules+=",SASL" - use nis && ! use elibc_uclibc && basic_modules+=",NIS" - use radius && basic_modules+=",RADIUS" - if use mysql || use postgres || use sqlite ; then - basic_modules+=",DB" - fi - - local digest_modules="file" - use ldap && digest_modules+=",LDAP,eDirectory" - - local negotiate_modules="none" - local myconf="--without-mit-krb5 --without-heimdal-krb5" - if use kerberos ; then - negotiate_modules="kerberos,wrapper" - if has_version app-crypt/heimdal ; then - myconf="--without-mit-krb5 --with-heimdal-krb5" - else - myconf="--with-mit-krb5 --without-heimdal-krb5" - fi - fi - - local ntlm_modules="none" - use samba && ntlm_modules="smb_lm" - - local ext_helpers="file_userip,session,unix_group" - use samba && ext_helpers+=",wbinfo_group" - use ldap && ext_helpers+=",LDAP_group,eDirectory_userip" - use ldap && use kerberos && ext_helpers+=",kerberos_ldap_group" - - local storeio_modules="aufs,diskd,rock,ufs" - - local transparent - if use kernel_linux ; then - transparent+=" --enable-linux-netfilter" - use qos && transparent+=" --enable-zph-qos --with-netfilter-conntrack" - fi - - if use kernel_FreeBSD || use kernel_OpenBSD || use kernel_NetBSD ; then - transparent+=" $(use_enable kqueue)" - if use pf-transparent; then - transparent+=" --enable-pf-transparent" - elif use ipf-transparent; then - transparent+=" --enable-ipf-transparent" - fi - fi - - tc-export CC AR - - econf \ - --sysconfdir=/etc/squid \ - --libexecdir=/usr/libexec/squid \ - --localstatedir=/var \ - --with-pidfile=/run/squid.pid \ - --datadir=/usr/share/squid \ - --with-logdir=/var/log/squid \ - --with-default-user=squid \ - --enable-removal-policies="lru,heap" \ - --enable-storeio="${storeio_modules}" \ - --enable-disk-io \ - --enable-auth-basic="${basic_modules}" \ - --enable-auth-digest="${digest_modules}" \ - --enable-auth-ntlm="${ntlm_modules}" \ - --enable-auth-negotiate="${negotiate_modules}" \ - --enable-external-acl-helpers="${ext_helpers}" \ - --enable-log-daemon-helpers \ - --enable-url-rewrite-helpers \ - --enable-cache-digests \ - --enable-delay-pools \ - --enable-eui \ - --enable-icmp \ - --enable-follow-x-forwarded-for \ - --with-large-files \ - --disable-strict-error-checking \ - --disable-arch-native \ - --with-ltdl-includedir=/usr/include \ - --with-ltdl-libdir=/usr/$(get_libdir) \ - $(use_with caps libcap) \ - $(use_enable ipv6) \ - $(use_enable snmp) \ - $(use_with ssl openssl) \ - $(use_with ssl nettle) \ - $(use_with ssl gnutls) \ - $(use_enable ssl-crtd) \ - $(use_enable ecap) \ - $(use_enable esi) \ - $(use_enable htcp) \ - $(use_enable wccp) \ - $(use_enable wccpv2) \ - ${transparent} \ - ${myconf} -} - -src_install() { - emake DESTDIR="${D}" install - - # need suid root for looking into /etc/shadow - fowners root:squid /usr/libexec/squid/basic_ncsa_auth - fperms 4750 /usr/libexec/squid/basic_ncsa_auth - if use pam; then - fowners root:squid /usr/libexec/squid/basic_pam_auth - fperms 4750 /usr/libexec/squid/basic_pam_auth - fi - # pinger needs suid as well - fowners root:squid /usr/libexec/squid/pinger - fperms 4750 /usr/libexec/squid/pinger - - # cleanup - rm -f "${D}"/usr/bin/Run* - rm -rf "${D}"/run/squid "${D}"/var/cache/squid - - dodoc CONTRIBUTORS CREDITS ChangeLog INSTALL QUICKSTART README SPONSORS doc/*.txt - newdoc helpers/negotiate_auth/kerberos/README README.kerberos - newdoc helpers/basic_auth/RADIUS/README README.RADIUS - newdoc helpers/external_acl/kerberos_ldap_group/README README.kerberos_ldap_group - newdoc tools/purge/README README.purge - newdoc tools/helper-mux.README README.helper-mux - dodoc RELEASENOTES.html - - newpamd "${FILESDIR}/squid.pam" squid - newconfd "${FILESDIR}/squid.confd-r1" squid - newinitd "${FILESDIR}/squid.initd-r4" squid - if use logrotate; then - insinto /etc/logrotate.d - newins "${FILESDIR}/squid.logrotate" squid - else - exeinto /etc/cron.weekly - newexe "${FILESDIR}/squid.cron" squid.cron - fi - - diropts -m0750 -o squid -g squid - keepdir /var/log/squid /etc/ssl/squid /var/lib/squid -} diff --git a/profiles/package.mask b/profiles/package.mask index aadb77916a50..5ec9cc9c1b87 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -30,6 +30,10 @@ #--- END OF EXAMPLES --- +# Fabian Groffen (31 Jan 2017) +# Mask upcoming Exim release candidates +=mail-mta/exim-4.89_rc1 + # David Seifert (30 Jan 2017) # No maintainer activity since git migration, dated eclass # Multiple open bugs, with no activity: diff --git a/sci-chemistry/PyMca/files/4.4.1_p1-gentoo.patch b/sci-chemistry/PyMca/files/4.4.1_p1-gentoo.patch deleted file mode 100644 index 487a45963d21..000000000000 --- a/sci-chemistry/PyMca/files/4.4.1_p1-gentoo.patch +++ /dev/null @@ -1,40 +0,0 @@ -diff --git a/setup.py b/setup.py -index 0b0fa58..a4fdab6 100755 ---- a/setup.py -+++ b/setup.py -@@ -41,34 +41,8 @@ for line in file(os.path.join('PyMca', 'PyMcaMain.py')).readlines(): - print "PyMca X-Ray Fluorescence Toolkit %s" % __version__ - print - --print "Type 'L' to view the license." --print "Type 'yes' to accept the terms of the license." --print "Type 'no' to decline the terms of the license." --print -- --while 1: -- try: -- resp = raw_input("Do you accept the terms of the license? ") -- except KeyboardInterrupt: -- raise SystemExit -- except: -- resp = "" -- -- resp = string.lower(string.strip(resp)) -- -- if resp == "yes": -- break -- -- if resp == "no": -- sys.exit(1) -- -- if resp == "l": -- os.system("more LICENSE.GPL") -- -- - # Specify all the required PyMca data --data_files = [('PyMca', ['LICENSE.GPL', -- 'PyMca/Scofield1973.dict', -+data_files = [('PyMca', ['PyMca/Scofield1973.dict', - 'PyMca/changelog.txt', - 'PyMca/McaTheory.cfg', - 'PyMca/PyMcaSplashImage.png', diff --git a/sci-chemistry/PyMca/files/4.4.1_p1-impl-dec.patch b/sci-chemistry/PyMca/files/4.4.1_p1-impl-dec.patch deleted file mode 100644 index ea37348066d2..000000000000 --- a/sci-chemistry/PyMca/files/4.4.1_p1-impl-dec.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/PyMca/specfile/src/sfwrite.c b/PyMca/specfile/src/sfwrite.c -index 24df907..93c18e9 100755 ---- a/PyMca/specfile/src/sfwrite.c -+++ b/PyMca/specfile/src/sfwrite.c -@@ -55,6 +55,7 @@ - */ - #include - #include -+#include - - /* - * Declarations diff --git a/sci-chemistry/acpype/files/acpype.patch b/sci-chemistry/acpype/files/acpype.patch deleted file mode 100644 index 9354527cc8a9..000000000000 --- a/sci-chemistry/acpype/files/acpype.patch +++ /dev/null @@ -1,37 +0,0 @@ -Index: acpype.py -=================================================================== ---- acpype.py (revision 366) -+++ acpype.py (working copy) -@@ -3020,32 +3020,6 @@ - acMol2FileName = '%s_%s_%s.mol2' % (base, chargeType, atomType) - self.acMol2FileName = acMol2FileName - self.charmmBase = '%s_CHARMM' % base -- # check for which version of antechamber -- if 'amber10' in self.acExe: -- if qprog == 'sqm': -- self.printWarn("SQM is not implemented in AmberTools 1.2") -- self.printWarn("Setting mopac for antechamber") -- qprog = 'mopac' -- elif qprog == 'divcon': -- if not os.path.exists(os.path.join(os.path.dirname(self.acExe), qprog)): -- self.printWarn("DIVCON is not installed") -- self.printWarn("Setting mopac for antechamber") -- qprog = 'mopac' -- elif 'amber11' in self.acExe: -- if qprog == 'divcon': -- self.printWarn("DIVCON is not implemented in AmberTools 1.3 anymore") -- self.printWarn("Setting sqm for antechamber") -- qprog = 'sqm' -- elif qprog == 'mopac': -- if not os.path.exists(os.path.join(os.path.dirname(self.acExe), qprog)): -- self.printWarn("MOPAC is not installed") -- self.printWarn("Setting sqm for antechamber") -- return None -- qprog = 'sqm' -- else: -- self.printWarn("Old version of antechamber. Strongly consider upgrading to AmberTools") -- self.printWarn("Setting mopac for antechamber") -- qprog = 'mopac' - self.qFlag = qDict[qprog] - self.outTopols = [outTopol] - if outTopol == 'all': diff --git a/sci-chemistry/aria/files/aria-2.3.2-python.patch b/sci-chemistry/aria/files/aria-2.3.2-python.patch deleted file mode 100644 index 1f9ae1fcc5f6..000000000000 --- a/sci-chemistry/aria/files/aria-2.3.2-python.patch +++ /dev/null @@ -1,30 +0,0 @@ - src/py/aria/legacy/QualityChecks/Descriptive.py | 5 +++-- - 1 files changed, 3 insertions(+), 2 deletions(-) - -diff --git a/src/py/aria/legacy/QualityChecks/Descriptive.py b/src/py/aria/legacy/QualityChecks/Descriptive.py -index ae5913c..550d20c 100644 ---- a/src/py/aria/legacy/QualityChecks/Descriptive.py -+++ b/src/py/aria/legacy/QualityChecks/Descriptive.py -@@ -1,3 +1,6 @@ -+from math import * -+from numpy import * -+ - class Descriptive: - """ - some basic statistics -@@ -55,7 +58,6 @@ class Descriptive: - - def getStdDev(self): - if( len(self.myData) == 0): return None -- from math import * - if( (self.count - 1) > 0 ): - return sqrt( self.pseudoVariance/ (self.count - 1)) - else: -@@ -89,7 +91,6 @@ class Descriptive: - def getMedian(self): - if( len(self.myData) == 0): return None - if( self.median == None ): -- from numpy import * - sort(self.myData) - if( self.count%2 == 1): - self.median = self.myData[(self.count-1)/2] diff --git a/sci-chemistry/aria/files/aria-2.3.2-through-space-2.patch b/sci-chemistry/aria/files/aria-2.3.2-through-space-2.patch deleted file mode 100644 index 6a363d098632..000000000000 --- a/sci-chemistry/aria/files/aria-2.3.2-through-space-2.patch +++ /dev/null @@ -1,139 +0,0 @@ - src/py/aria/exportToCcpn.py | 24 +++++++++++------------- - src/py/aria/importFromCcpn.py | 32 ++++++++++++-------------------- - 2 files changed, 23 insertions(+), 33 deletions(-) - -diff --git a/src/py/aria/exportToCcpn.py b/src/py/aria/exportToCcpn.py -index c742a88..aae7b7d 100644 ---- a/src/py/aria/exportToCcpn.py -+++ b/src/py/aria/exportToCcpn.py -@@ -1,5 +1,5 @@ - from ccpnmr.analysis.core.ConstraintBasic import makeNmrConstraintStore, makeStructureGeneration, getFixedResonance --from ccpnmr.analysis.core.ExperimentBasic import getOnebondDataDims -+from ccpnmr.analysis.core.ExperimentBasic import getOnebondDataDims, getThroughSpaceDataDims - from ccpnmr.analysis.core.AssignmentBasic import assignAtomsToRes, assignResToDim - from ccpnmr.analysis.core.PeakBasic import pickPeak, setManualPeakIntensity - from ccpnmr.analysis.core.MoleculeBasic import DEFAULT_ISOTOPES -@@ -791,12 +791,13 @@ def getPeakAssignmentsFromAria2(project, ariaRestraints, namesDict=None, - ariaDims = ariaDimDict.get(spectrum) - if not ariaDims: - ariaDims = [] #[0,1,2] -+ throughSpaceDataDims = getThroughSpaceDataDims(spectrum) - - dataDims = spectrum.sortedDataDims() - if len(dataDims) == 3: - for dataDim in dataDims: - expDimRef = dataDim.findFirstDataDimRef().expDimRef -- if '1H' in expDimRef.isotopeCodes: # 0 or 2 -+ if dataDim in throughSpaceDataDims: # 0 or 2 - if onebondDims.get(dataDim.dim): - if ppmX1 is None: - ariaDims.append(2) -@@ -816,21 +817,18 @@ def getPeakAssignmentsFromAria2(project, ariaRestraints, namesDict=None, - ariaDims.append(1) - - else: -- transfer = spectrum.experiment.findFirstExpTransfer(transferType='through-space') or \ -- spectrum.experiment.findFirstExpTransfer(transferType='NOESY') - -+ i = 0 - for dataDim in dataDims: -- expDimRefs = [dataDimRef.expDimRef for dataDimRef in dataDim.dataDimRefs] -- i = 0 -- for expDimRef in transfer.sortedExpDimRefs(): -- if expDimRef in expDimRefs: -- ariaDims.append(i) -- boundDim = onebondDims.get(dataDim.dim) -- if boundDim: -- ariaDims.append(i+1) -- -+ if dataDim in throughSpaceDataDims: -+ ariaDims.append(i) -+ boundDim = onebondDims.get(dataDim.dim) -+ if boundDim: -+ ariaDims.append(i+1) -+ - i += 2 - -+ - ariaDimDict[spectrum] = ariaDims - - if namesDict: -diff --git a/src/py/aria/importFromCcpn.py b/src/py/aria/importFromCcpn.py -index a65ae3e..f63ba16 100644 ---- a/src/py/aria/importFromCcpn.py -+++ b/src/py/aria/importFromCcpn.py -@@ -165,7 +165,7 @@ def getStructureEnsembles(project, ccpChains): - - return ensembles - --def getNoesyPeakLists(project, molSystem=None): -+def getNoesyPeakLists(project, molSystem=None, excludeSimulated=True): - """Descrn: Get the NOE peak lists from a CCPN project. Can filter if appropriate to a given - molecular system if passed in. - Inputs: Implementation.Project, ccp.molecule.MolSystem.MolSystem -@@ -196,19 +196,10 @@ def getNoesyPeakLists(project, molSystem=None): - - for spectrum in experiment.dataSources: - if (spectrum.dataType == 'processed') and (spectrum.numDim > 1): -- -- isotopes = [] -- for dataDim in spectrum.dataDims: -- for expDimRef in dataDim.expDim.expDimRefs: -- if expDimRef.measurementType in ('shift','Shift'): -- isotope = ','.join(expDimRef.isotopeCodes) -- isotopes.append(isotope) -- break -- -- if isotopes.count('1H') > 1: -- for peakList in spectrum.peakLists: -- if peakList.findFirstPeak(): -- peakLists.append(peakList) -+ for peakList in spectrum.sortedPeakLists(): -+ if excludeSimulated and peakList.isSimulated: -+ continue -+ peakLists.append(peakList) - - - return peakLists -@@ -490,7 +481,10 @@ def makeAriaChain(ccpChain): - # Does below work for DNA/RNA? - - aria_settings = ChainSettings() -- aria_settings['type'] = chainTypeMapping[ccpChain.molecule.molType] -+ # wb104: below changed 31 Oct 2011 to try and get around case when molType is None -+ #aria_settings['type'] = chainTypeMapping[ccpChain.molecule.molType] -+ molType = ccpChain.molecule.molType or 'protein' -+ aria_settings['type'] = chainTypeMapping[molType] - - aria_chain = Chain(settings=aria_settings, segid=string_to_segid(ccpChain.code)) - -@@ -952,8 +946,6 @@ def makeAriaSpectrum(peakList, ariaMolecule, filterRejected=True): - expDimRefDict = {} - - for expDimRef in transfer.sortedExpDimRefs(): -- if expDimRef.isotopeCodes != ('1H',): -- raise Exception('Not an H-H experiment') - - onebondTransfer = expDimRef.findFirstExpTransfer(transferType='onebond') - -@@ -1095,7 +1087,7 @@ def getAriaAtomsFromResonance(resonance, ariaMolecule, cache={}): - - # TJS modify to return just a list of atoms, rather than a list of list - ariaAtoms = [] -- for atom in atomSet.sortedAtoms(): -+ for atom in atomSet.atoms: - ariaAtom = ariaResidue.atoms.get(atom.name) - if not ariaAtom: - messager.warning('Could not find ARIA Atom for CCPN atom %d%s %s' % (residue.seqCode,residue.ccpCode, atom.name)) -@@ -1256,9 +1248,9 @@ def getAriaDistanceRestraintsList(constraint_list, constraint_type, aria_mol): - restraint.setWeight(weight) - - -- for constrItem in distConstr.sortedItems(): -+ for constrItem in distConstr.items: - -- reso1, reso2 = constrItem.sortedResonances() -+ reso1, reso2 = constrItem.resonances - - # TJS fix for mapping prochirals - # always use real resonnances where possible diff --git a/sci-chemistry/aria/files/aria-2.3.2-through-space.patch b/sci-chemistry/aria/files/aria-2.3.2-through-space.patch deleted file mode 100644 index bda76aa11c80..000000000000 --- a/sci-chemistry/aria/files/aria-2.3.2-through-space.patch +++ /dev/null @@ -1,118 +0,0 @@ - src/py/aria/exportToCcpn.py | 24 +++++++++++------------- - src/py/aria/importFromCcpn.py | 25 +++++++------------------ - 2 files changed, 18 insertions(+), 31 deletions(-) - -diff --git a/src/py/aria/exportToCcpn.py b/src/py/aria/exportToCcpn.py -index c742a88..aae7b7d 100644 ---- a/src/py/aria/exportToCcpn.py -+++ b/src/py/aria/exportToCcpn.py -@@ -1,5 +1,5 @@ - from ccpnmr.analysis.core.ConstraintBasic import makeNmrConstraintStore, makeStructureGeneration, getFixedResonance --from ccpnmr.analysis.core.ExperimentBasic import getOnebondDataDims -+from ccpnmr.analysis.core.ExperimentBasic import getOnebondDataDims, getThroughSpaceDataDims - from ccpnmr.analysis.core.AssignmentBasic import assignAtomsToRes, assignResToDim - from ccpnmr.analysis.core.PeakBasic import pickPeak, setManualPeakIntensity - from ccpnmr.analysis.core.MoleculeBasic import DEFAULT_ISOTOPES -@@ -791,12 +791,13 @@ def getPeakAssignmentsFromAria2(project, ariaRestraints, namesDict=None, - ariaDims = ariaDimDict.get(spectrum) - if not ariaDims: - ariaDims = [] #[0,1,2] -+ throughSpaceDataDims = getThroughSpaceDataDims(spectrum) - - dataDims = spectrum.sortedDataDims() - if len(dataDims) == 3: - for dataDim in dataDims: - expDimRef = dataDim.findFirstDataDimRef().expDimRef -- if '1H' in expDimRef.isotopeCodes: # 0 or 2 -+ if dataDim in throughSpaceDataDims: # 0 or 2 - if onebondDims.get(dataDim.dim): - if ppmX1 is None: - ariaDims.append(2) -@@ -816,21 +817,18 @@ def getPeakAssignmentsFromAria2(project, ariaRestraints, namesDict=None, - ariaDims.append(1) - - else: -- transfer = spectrum.experiment.findFirstExpTransfer(transferType='through-space') or \ -- spectrum.experiment.findFirstExpTransfer(transferType='NOESY') - -+ i = 0 - for dataDim in dataDims: -- expDimRefs = [dataDimRef.expDimRef for dataDimRef in dataDim.dataDimRefs] -- i = 0 -- for expDimRef in transfer.sortedExpDimRefs(): -- if expDimRef in expDimRefs: -- ariaDims.append(i) -- boundDim = onebondDims.get(dataDim.dim) -- if boundDim: -- ariaDims.append(i+1) -- -+ if dataDim in throughSpaceDataDims: -+ ariaDims.append(i) -+ boundDim = onebondDims.get(dataDim.dim) -+ if boundDim: -+ ariaDims.append(i+1) -+ - i += 2 - -+ - ariaDimDict[spectrum] = ariaDims - - if namesDict: -diff --git a/src/py/aria/importFromCcpn.py b/src/py/aria/importFromCcpn.py -index a65ae3e..91ad123 100644 ---- a/src/py/aria/importFromCcpn.py -+++ b/src/py/aria/importFromCcpn.py -@@ -196,19 +196,10 @@ def getNoesyPeakLists(project, molSystem=None): - - for spectrum in experiment.dataSources: - if (spectrum.dataType == 'processed') and (spectrum.numDim > 1): -- -- isotopes = [] -- for dataDim in spectrum.dataDims: -- for expDimRef in dataDim.expDim.expDimRefs: -- if expDimRef.measurementType in ('shift','Shift'): -- isotope = ','.join(expDimRef.isotopeCodes) -- isotopes.append(isotope) -- break -- -- if isotopes.count('1H') > 1: -- for peakList in spectrum.peakLists: -- if peakList.findFirstPeak(): -- peakLists.append(peakList) -+ for peakList in spectrum.sortedPeakLists(): -+ if excludeSimulated and peakList.isSimulated: -+ continue -+ peakLists.append(peakList) - - - return peakLists -@@ -952,8 +943,6 @@ def makeAriaSpectrum(peakList, ariaMolecule, filterRejected=True): - expDimRefDict = {} - - for expDimRef in transfer.sortedExpDimRefs(): -- if expDimRef.isotopeCodes != ('1H',): -- raise Exception('Not an H-H experiment') - - onebondTransfer = expDimRef.findFirstExpTransfer(transferType='onebond') - -@@ -1095,7 +1084,7 @@ def getAriaAtomsFromResonance(resonance, ariaMolecule, cache={}): - - # TJS modify to return just a list of atoms, rather than a list of list - ariaAtoms = [] -- for atom in atomSet.sortedAtoms(): -+ for atom in atomSet.atoms: - ariaAtom = ariaResidue.atoms.get(atom.name) - if not ariaAtom: - messager.warning('Could not find ARIA Atom for CCPN atom %d%s %s' % (residue.seqCode,residue.ccpCode, atom.name)) -@@ -1256,9 +1245,9 @@ def getAriaDistanceRestraintsList(constraint_list, constraint_type, aria_mol): - restraint.setWeight(weight) - - -- for constrItem in distConstr.sortedItems(): -+ for constrItem in distConstr.items: - -- reso1, reso2 = constrItem.sortedResonances() -+ reso1, reso2 = constrItem.resonances - - # TJS fix for mapping prochirals - # always use real resonnances where possible diff --git a/sci-chemistry/autodock/files/4.0.1-gcc-4.3.patch b/sci-chemistry/autodock/files/4.0.1-gcc-4.3.patch deleted file mode 100644 index b9eb3c409c64..000000000000 --- a/sci-chemistry/autodock/files/4.0.1-gcc-4.3.patch +++ /dev/null @@ -1,10 +0,0 @@ ---- autodocksuite-4.0.1.orig/src/autogrid/check_size.cpp 2008-08-04 22:44:46.000000000 -0700 -+++ autodocksuite-4.0.1/src/autogrid/check_size.cpp 2008-08-04 22:45:12.000000000 -0700 -@@ -27,6 +27,7 @@ - - #include - #include -+#include - #include "autogrid.h" - - diff --git a/sci-chemistry/autodock_vina/files/1.1.1-gentoo.patch b/sci-chemistry/autodock_vina/files/1.1.1-gentoo.patch deleted file mode 100644 index 356ae2ee547d..000000000000 --- a/sci-chemistry/autodock_vina/files/1.1.1-gentoo.patch +++ /dev/null @@ -1,68 +0,0 @@ -diff --git a/build/linux/debug/Makefile b/build/linux/debug/Makefile -index d2c2d3b..d1f02e5 100644 ---- a/build/linux/debug/Makefile -+++ b/build/linux/debug/Makefile -@@ -1,6 +1,6 @@ - BASE=/usr/local - BOOST_VERSION=1_41 --C_PLATFORM=-static-libgcc -pthread -+C_PLATFORM=-pthread - GPP=/usr/bin/g++ - C_OPTIONS= -g - BOOST_LIB_VERSION= -diff --git a/build/linux/release/Makefile b/build/linux/release/Makefile -index bfbcc1e..c9fd630 100644 ---- a/build/linux/release/Makefile -+++ b/build/linux/release/Makefile -@@ -1,6 +1,6 @@ - BASE=/usr/local - BOOST_VERSION=1_41 --C_PLATFORM=-static-libgcc -pthread -+C_PLATFORM=-pthread - GPP=/usr/bin/g++ - C_OPTIONS= -O3 -DNDEBUG - BOOST_LIB_VERSION= -diff --git a/build/makefile_common b/build/makefile_common -index 885935c..e72142d 100644 ---- a/build/makefile_common -+++ b/build/makefile_common -@@ -1,30 +1,30 @@ --BOOST_INCLUDE = $(BASE)/include/boost-${BOOST_VERSION} -+BOOST_INCLUDE = $(BASE)/include/boost - - LIBOBJ = cache.o coords.o current_weights.o everything.o grid.o szv_grid.o manifold.o model.o monte_carlo.o mutate.o my_pid.o naive_non_cache.o non_cache.o parallel_mc.o parse_pdbqt.o pdb.o quasi_newton.o quaternion.o random.o ssd.o terms.o weighted_terms.o - MAINOBJ = main.o - SPLITOBJ = split.o - --INCFLAGS = -I $(BOOST_INCLUDE) -+INCFLAGS = -I$(BOOST_INCLUDE) - --CC = ${GPP} ${C_PLATFORM} -ansi -pedantic -Wno-long-long ${C_OPTIONS} $(INCFLAGS) -+CC = ${GPP} ${C_PLATFORM} ${C_OPTIONS} $(INCFLAGS) - --LDFLAGS = -L$(BASE)/lib -L. -+LDFLAGS += -L. - --LIBS = -l boost_system${BOOST_LIB_VERSION} -l boost_thread${BOOST_LIB_VERSION} -l boost_serialization${BOOST_LIB_VERSION} -l boost_filesystem${BOOST_LIB_VERSION} -l boost_program_options${BOOST_LIB_VERSION}#-l pthread -+LIBS = -lboost_system -lboost_thread -lboost_serialization -lboost_filesystem -lboost_program_options -lpthread - - .SUFFIXES: .cpp .o - - %.o : ../../../src/lib/%.cpp -- $(CC) $(CFLAGS) -o $@ -c $< -+ $(CC) $(CXXFLAGS) -o $@ -c $< - - %.o : ../../../src/design/%.cpp -- $(CC) $(CFLAGS) -I ../../../src/lib -o $@ -c $< -+ $(CC) $(CXXFLAGS) -I ../../../src/lib -o $@ -c $< - - %.o : ../../../src/main/%.cpp -- $(CC) $(CFLAGS) -I ../../../src/lib -o $@ -c $< -+ $(CC) $(CXXFLAGS) -I ../../../src/lib -o $@ -c $< - - %.o : ../../../src/split/%.cpp -- $(CC) $(CFLAGS) -I ../../../src/lib -o $@ -c $< -+ $(CC) $(CXXFLAGS) -I ../../../src/lib -o $@ -c $< - - all: vina vina_split - diff --git a/sci-chemistry/bkchem/files/0.14.0_pre1-piddle-Fix-assertions.patch b/sci-chemistry/bkchem/files/0.14.0_pre1-piddle-Fix-assertions.patch deleted file mode 100644 index 6270e59d5320..000000000000 --- a/sci-chemistry/bkchem/files/0.14.0_pre1-piddle-Fix-assertions.patch +++ /dev/null @@ -1,48 +0,0 @@ -diff --git a/bkchem/plugins/piddle/pdfgen.py b/bkchem/plugins/piddle/pdfgen.py -index 5213672..4c056c7 100644 ---- a/bkchem/plugins/piddle/pdfgen.py -+++ b/bkchem/plugins/piddle/pdfgen.py -@@ -639,7 +639,7 @@ class Canvas: - - #use a flate filter and Ascii Base 85 to compress - raw = myimage.tostring() -- assert(len(raw) == imgwidth * imgheight, "Wrong amount of data for image") -+ assert len(raw) == imgwidth * imgheight, "Wrong amount of data for image" - compressed = zlib.compress(raw) #this bit is very fast... - encoded = pdfutils._AsciiBase85Encode(compressed) #...sadly this isn't - -diff --git a/bkchem/plugins/piddle/pdfutils.py b/bkchem/plugins/piddle/pdfutils.py -index ebde677..4a7675d 100644 ---- a/bkchem/plugins/piddle/pdfutils.py -+++ b/bkchem/plugins/piddle/pdfutils.py -@@ -27,7 +27,7 @@ def cacheImageFile(filename): - code.append('ID') - #use a flate filter and Ascii Base 85 - raw = img.tostring() -- assert(len(raw) == imgwidth * imgheight, "Wrong amount of data for image") -+ assert len(raw) == imgwidth * imgheight, "Wrong amount of data for image" - compressed = zlib.compress(raw) #this bit is very fast... - encoded = _AsciiBase85Encode(compressed) #...sadly this isn't - -diff --git a/bkchem/plugins/piddle/piddlePS.py b/bkchem/plugins/piddle/piddlePS.py -index 4d3c327..3afa361 100644 ---- a/bkchem/plugins/piddle/piddlePS.py -+++ b/bkchem/plugins/piddle/piddlePS.py -@@ -866,7 +866,7 @@ translate - # piddlePDF again - - rawimage = myimage.tostring() -- assert(len(rawimage) == imgwidth*imgheight, 'Wrong amount of data for image') -+ assert len(rawimage) == imgwidth*imgheight, 'Wrong amount of data for image' - #compressed = zlib.compress(rawimage) # no zlib at moment - hex_encoded = self._AsciiHexEncode(rawimage) - -@@ -957,7 +957,7 @@ translate - 'image']) - # after image operator just need to dump image dat to file as hexstring - rawimage = myimage.tostring() -- assert(len(rawimage) == imwidth*imheight, 'Wrong amount of data for image') -+ assert len(rawimage) == imwidth*imheight, 'Wrong amount of data for image' - #compressed = zlib.compress(rawimage) # no zlib at moment - hex_encoded = self._AsciiHexEncode(rawimage) - diff --git a/sci-chemistry/burrow-owl/files/1.4-glibc-2.12.patch b/sci-chemistry/burrow-owl/files/1.4-glibc-2.12.patch deleted file mode 100644 index cca640a6347d..000000000000 --- a/sci-chemistry/burrow-owl/files/1.4-glibc-2.12.patch +++ /dev/null @@ -1,38 +0,0 @@ -Fix build with GLIBC-2.12 - -http://bugs.gentoo.org/show_bug.cgi?id=333843 - ---- src/Makefile.am -+++ src/Makefile.am -@@ -82,8 +82,8 @@ - painter.h \ - ticket.c \ - ticket.h \ --endian.c \ --endian.h \ -+bo_endian.c \ -+bo_endian.h \ - version.c \ - version.h - ---- src/hosbackingfile.c -+++ src/hosbackingfile.c -@@ -18,6 +18,7 @@ - */ - - #include "hosbackingfile.h" -+#include "bo_endian.h" - - #define DEFAULT_BUF_SIZE 512 - ---- src/nih.c -+++ src/nih.c -@@ -24,7 +24,7 @@ - #include "hosdimensionblock.h" - #include "hosbackingblock.h" - #include "hosbackingfile.h" --#include "endian.h" -+#include "bo_endian.h" - - /* --- header contents ---- - * diff --git a/sci-chemistry/burrow-owl/files/1.4-include.patch b/sci-chemistry/burrow-owl/files/1.4-include.patch deleted file mode 100644 index 3dc4cbdf8000..000000000000 --- a/sci-chemistry/burrow-owl/files/1.4-include.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/src/gw/spectrum-spec.scm b/src/gw/spectrum-spec.scm -index 253464c..605796c 100644 ---- a/src/gw/spectrum-spec.scm -+++ b/src/gw/spectrum-spec.scm -@@ -30,6 +30,7 @@ - "#include \n" - "#include \n" - "#include \n" -+ "#include \n" - "\n")) - - ; couple of disabled sources diff --git a/sci-chemistry/burrow-owl/files/burrow-owl-1.5-prll.patch b/sci-chemistry/burrow-owl/files/burrow-owl-1.5-prll.patch deleted file mode 100644 index 340ccd2366e5..000000000000 --- a/sci-chemistry/burrow-owl/files/burrow-owl-1.5-prll.patch +++ /dev/null @@ -1,20 +0,0 @@ - burrow/canvas/gw/Makefile.am | 4 +++- - 1 files changed, 3 insertions(+), 1 deletions(-) - -diff --git a/burrow/canvas/gw/Makefile.am b/burrow/canvas/gw/Makefile.am -index da50ee3..2ed89bc 100644 ---- a/burrow/canvas/gw/Makefile.am -+++ b/burrow/canvas/gw/Makefile.am -@@ -31,9 +31,11 @@ H2DEF=@top_srcdir@/utils/h2def.py - canvas.defs: $(HEADERS_1) - $(H2DEF) --all $(HEADERS_1) > $@ - --canvas-gw.c canvas-gw.h canvas-gw.scm: canvas.defs -+canvas-gw.c canvas-gw.h: canvas.defs - GUILE_LOAD_PATH=@srcdir@:@builddir@:@GUILE_GNOME_MODULE_DIR@:@G_WRAP_MODULE_DIR@:$$GUILE_LOAD_PATH $(GUILE) -s @srcdir@/run-g-wrap.scm - -+BUILT_SOURCES=canvas-gw.c canvas-gw.h canvas.defs -+ - INCLUDES=@GTK_CFLAGS@ @G_WRAP_CFLAGS@ @GUILE_GNOME_CFLAGS@ @GUILE_CAIRO_CFLAGS@ @GUILE_CFLAGS@ -I$(headers_dir) -I@top_srcdir@ - - moduledir=$(datadir)/guile/burrow diff --git a/sci-chemistry/ccpn/files/talosn.patch b/sci-chemistry/ccpn/files/talosn.patch deleted file mode 100644 index e19a0ab19783..000000000000 --- a/sci-chemistry/ccpn/files/talosn.patch +++ /dev/null @@ -1,16 +0,0 @@ - ccpnmr2.3/python/ccpnmr/format/general/Constants.py | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/ccpnmr2.3/python/ccpnmr/format/general/Constants.py b/ccpnmr2.3/python/ccpnmr/format/general/Constants.py -index d10553e..fb732db 100644 ---- a/ccpnmr2.3/python/ccpnmr/format/general/Constants.py -+++ b/ccpnmr2.3/python/ccpnmr/format/general/Constants.py -@@ -865,7 +865,7 @@ IoSetupList = [ - 'cyana': ['dihedrals.aco',1,1, [['SelectionList','version','Cyana version:',['2.0','2.1'],None]], - [['SelectionList','version','Cyana version:',['2.0','2.1'],None]]], - 'nmrStar': ['nmrStar.str',1,0, [],[]], -- 'talos': ['dihedral.tab',1,0, [['MultiSelectionList','validClasses','Classes for valid constraint:',['Good','New','Warn','None'],None], -+ 'talos': ['dihedral.tab',1,0, [['MultiSelectionList','validClasses','Classes for valid constraint:',['Good','New','Warn','Dyn', 'Strong', 'Generous', 'None'],None], - ['IntEntry','validCount','Count variable lower limit for valid constraint:',0,None], - ['FloatEntry','multiplyDeviation','Multiplication factor to convert deviation in constraint range:',2.0,None]], - []]}, diff --git a/sci-chemistry/coot/files/0.6.2-clipper-config.patch b/sci-chemistry/coot/files/0.6.2-clipper-config.patch deleted file mode 100644 index 311b5e88d84e..000000000000 --- a/sci-chemistry/coot/files/0.6.2-clipper-config.patch +++ /dev/null @@ -1,17 +0,0 @@ - macros/clipper.m4 | 3 +++ - 1 files changed, 3 insertions(+), 0 deletions(-) - -diff --git a/macros/clipper.m4 b/macros/clipper.m4 -index 0bf087a..d0e8b6b 100644 ---- a/macros/clipper.m4 -+++ b/macros/clipper.m4 -@@ -98,6 +98,9 @@ case $ac_cv_build_alias in - ;; - esac - -+CLIPPER_CXXFLAGS=`clipper-config --cflags` -+CLIPPER_LDOPTS=`clipper-config --libs` -+ - AC_MSG_CHECKING([for Clipper]) - - LIBS="$save_LIBS $CLIPPER_LDOPTS" diff --git a/sci-chemistry/coot/files/0.6.2-gl.patch b/sci-chemistry/coot/files/0.6.2-gl.patch deleted file mode 100644 index bbd858c646df..000000000000 --- a/sci-chemistry/coot/files/0.6.2-gl.patch +++ /dev/null @@ -1,10 +0,0 @@ -Index: coot-surface/Makefile.am -=================================================================== ---- coot-surface/Makefile.am (revision 3478) -+++ coot-surface/Makefile.am (working copy) -@@ -29,4 +29,4 @@ - - libcoot_surface_la_LIBADD = \ - $(top_builddir)/surface/libccp4mg-surface.la \ -- $(GLUT_LIBS) $(CLIPPER_LIBS) $(MMDB_LIBS) -+ $(GLUT_LIBS) $(CLIPPER_LIBS) $(MMDB_LIBS) -lGL diff --git a/sci-chemistry/coot/files/0.6.2-libpng15.patch b/sci-chemistry/coot/files/0.6.2-libpng15.patch deleted file mode 100644 index bddd251698de..000000000000 --- a/sci-chemistry/coot/files/0.6.2-libpng15.patch +++ /dev/null @@ -1,29 +0,0 @@ ---- ccp4mg-utils/ppmutil.cc -+++ ccp4mg-utils/ppmutil.cc -@@ -2494,15 +2494,21 @@ - - pixels = new unsigned char[width*height*colourspace]; - -+ png_colorp palette; -+ int num_trans; -+#if PNG_LIBPNG_VER_MAJOR >= 1 && PNG_LIBPNG_VER_MINOR >=4 -+ png_bytep trans_alpha; -+#endif -+ - for (int i=0; ipalette[row_pointers[i][j]].red; -- pixels[i*width*colourspace+j*colourspace+1] = png_ptr->palette[row_pointers[i][j]].green; -- pixels[i*width*colourspace+j*colourspace+2] = png_ptr->palette[row_pointers[i][j]].blue; -- if(row_pointers[i][j]num_trans){ -+ pixels[i*width*colourspace+j*colourspace] = palette[row_pointers[i][j]].red; -+ pixels[i*width*colourspace+j*colourspace+1] = palette[row_pointers[i][j]].green; -+ pixels[i*width*colourspace+j*colourspace+2] = palette[row_pointers[i][j]].blue; -+ if(row_pointers[i][j]= 1 && PNG_LIBPNG_VER_MINOR >=4 -- pixels[i*width*colourspace+j*colourspace+3] = png_ptr->trans_alpha[row_pointers[i][j]]; -+ pixels[i*width*colourspace+j*colourspace+3] = trans_alpha[row_pointers[i][j]]; - #else - pixels[i*width*colourspace+j*colourspace+3] = png_ptr->trans[row_pointers[i][j]]; - #endif diff --git a/sci-chemistry/coot/files/0.6.2-mmdb-config.patch b/sci-chemistry/coot/files/0.6.2-mmdb-config.patch deleted file mode 100644 index 1d7cbd452f7b..000000000000 --- a/sci-chemistry/coot/files/0.6.2-mmdb-config.patch +++ /dev/null @@ -1,18 +0,0 @@ - macros/mmdb.m4 | 4 ++++ - 1 files changed, 4 insertions(+), 0 deletions(-) - -diff --git a/macros/mmdb.m4 b/macros/mmdb.m4 -index b477597..d05cf66 100644 ---- a/macros/mmdb.m4 -+++ b/macros/mmdb.m4 -@@ -86,6 +86,10 @@ else - ac_MMDB_LDOPTS="-lmmdb -lm" - fi - -+PKG_CHECK_MODULES([MMDB],[mmdb >= 1.2]) -+ac_MMDB_LDOPTS="${MMDB_LIBS}" -+ac_MMDB_CXXFLAGS="${MMDB_CFLAGS}" -+ - AC_MSG_CHECKING([for MMDB]) - - LIBS="$save_LIBS $ac_MMDB_LDOPTS" diff --git a/sci-chemistry/coot/files/0.6.2-ssm.patch b/sci-chemistry/coot/files/0.6.2-ssm.patch deleted file mode 100644 index c801da72410a..000000000000 --- a/sci-chemistry/coot/files/0.6.2-ssm.patch +++ /dev/null @@ -1,56 +0,0 @@ - macros/mmdb-ssm.m4 | 42 +----------------------------------------- - 1 files changed, 1 insertions(+), 41 deletions(-) - -diff --git a/macros/mmdb-ssm.m4 b/macros/mmdb-ssm.m4 -index 1937a16..6ef547c 100644 ---- a/macros/mmdb-ssm.m4 -+++ b/macros/mmdb-ssm.m4 -@@ -22,47 +22,7 @@ - AC_DEFUN([AM_WITH_MMDBSSM], - [AC_PROVIDE([AM_USE_MMDBSSM]) - -- --AC_ARG_WITH(ssmlib-prefix, -- AC_HELP_STRING( [--with-ssmlib-prefix=PFX], [Prefix where SSMLib has been installed] ), -- [ with_ssmlib_prefix="$withval" ], -- with_ssmlib_prefix="") -- --AC_MSG_CHECKING([for SSMLib]) -- --if test x$with_ssmlib_prefix != x; then -- -- MMDBSSM_CXXFLAGS="-DHAVE_SSMLIB" -- MMDBSSM_LIBS="-L$with_ssmlib_prefix/$acl_libdirstem -lssm" -- --ac_mmdb_dirs=' --. --include --include/ssm --include/mmdb --lib --src --lib/src --lib/src/mmdb' -- -- for ac_dir in $ac_mmdb_dirs; do -- if test -r "$with_ssmlib_prefix/$ac_dir/ssm_superpose.h"; then -- ac_MMDBSSM_CXXFLAGS="-I$with_ssmlib_prefix/$ac_dir" -- break -- fi -- done -- -- MMDBSSM_CXXFLAGS="$MMDBSSM_CXXFLAGS $ac_MMDBSSM_CXXFLAGS" -- --else -- -- MMDBSSM_CXXFLAGS="" -- MMDBSSM_LIBS="" -- with_ssmlib_prefix=no -- --fi -- --AC_MSG_RESULT([$with_ssmlib_prefix]) -+PKG_CHECK_MODULES([MMDBSSM],[ssm]) - - AC_SUBST(MMDBSSM_CXXFLAGS) - AC_SUBST(MMDBSSM_LIBS) diff --git a/sci-chemistry/coot/files/0.6.2-test.patch b/sci-chemistry/coot/files/0.6.2-test.patch deleted file mode 100644 index 8cb79e65d767..000000000000 --- a/sci-chemistry/coot/files/0.6.2-test.patch +++ /dev/null @@ -1,16 +0,0 @@ - src/testing.cc | 4 +++- - 1 files changed, 3 insertions(+), 1 deletions(-) - -diff --git a/src/testing.cc b/src/testing.cc -index f767bf6..097b9b9 100644 ---- a/src/testing.cc -+++ b/src/testing.cc -@@ -86,6 +86,8 @@ std::string greg_test(const std::string &file_name) { - const char *c = getenv("COOT_TEST_DATA_DIR"); - if (c) { - dd = c; -+ dd += "/"; -+ dd += file_name; - } else { - const char *d = getenv("HOME"); - if (d) { diff --git a/sci-chemistry/coot/files/coot-0.7-clipper-config.patch b/sci-chemistry/coot/files/coot-0.7-clipper-config.patch deleted file mode 100644 index 311b5e88d84e..000000000000 --- a/sci-chemistry/coot/files/coot-0.7-clipper-config.patch +++ /dev/null @@ -1,17 +0,0 @@ - macros/clipper.m4 | 3 +++ - 1 files changed, 3 insertions(+), 0 deletions(-) - -diff --git a/macros/clipper.m4 b/macros/clipper.m4 -index 0bf087a..d0e8b6b 100644 ---- a/macros/clipper.m4 -+++ b/macros/clipper.m4 -@@ -98,6 +98,9 @@ case $ac_cv_build_alias in - ;; - esac - -+CLIPPER_CXXFLAGS=`clipper-config --cflags` -+CLIPPER_LDOPTS=`clipper-config --libs` -+ - AC_MSG_CHECKING([for Clipper]) - - LIBS="$save_LIBS $CLIPPER_LDOPTS" diff --git a/sci-chemistry/coot/files/coot-0.7-goocanvas.patch b/sci-chemistry/coot/files/coot-0.7-goocanvas.patch deleted file mode 100644 index ce0d4a00abba..000000000000 --- a/sci-chemistry/coot/files/coot-0.7-goocanvas.patch +++ /dev/null @@ -1,25 +0,0 @@ -Index: macros/goo-canvas.m4 -=================================================================== ---- macros/goo-canvas.m4 (revision 3307) -+++ macros/goo-canvas.m4 (working copy) -@@ -56,9 +56,9 @@ - fi - fi - --AC_MSG_CHECKING([for Goocanvas]) -+PKG_CHECK_MODULES(GOOCANVAS, goocanvas) - --LIBS="$saved_LIBS $GOOCANVAS_LDOPTS $GTK_LIBS" -+LIBS="$saved_LIBS $GOOCANVAS_LIBS $GTK_LIBS" - CXXFLAGS="$saved_CXXFLAGS $GOOCANVAS_CFLAGS $GTK_CFLAGS" - # - # AC_TRY_LINK uses the c compiler (set by AC_LANG), so we will -@@ -76,7 +76,7 @@ - if test x$have_goocanvas = xyes; then - - GOOCANVAS_CFLAGS="$GOOCANVAS_CFLAGS" -- GOOCANVAS_LIBS="$GOOCANVAS_LDOPTS" -+ GOOCANVAS_LIBS="$GOOCANVAS_LIBS" - - ifelse([$1], , :, [$1]) - diff --git a/sci-chemistry/coot/files/coot-0.7-mmdb-config.patch b/sci-chemistry/coot/files/coot-0.7-mmdb-config.patch deleted file mode 100644 index b3b66ab65786..000000000000 --- a/sci-chemistry/coot/files/coot-0.7-mmdb-config.patch +++ /dev/null @@ -1,18 +0,0 @@ -Index: macros/mmdb.m4 -=================================================================== ---- macros/mmdb.m4 (revision 3579) -+++ macros/mmdb.m4 (working copy) -@@ -86,8 +86,12 @@ - ac_MMDB_LDOPTS="-lmmdb -lm" - fi - --AC_MSG_CHECKING([for MMDB]) -+PKG_CHECK_MODULES([MMDB],[mmdb >= 1.2]) -+ac_MMDB_LDOPTS="${MMDB_LIBS}" -+ac_MMDB_CXXFLAGS="${MMDB_CFLAGS}" - -+AC_MSG_CHECKING([for CISPEP in MMDB]) -+ - LIBS="$save_LIBS $ac_MMDB_LDOPTS" - CXXFLAGS="$save_CXXFLAGS $ac_MMDB_CXXFLAGS" - # diff --git a/sci-chemistry/coot/files/coot-0.7-ssm.patch b/sci-chemistry/coot/files/coot-0.7-ssm.patch deleted file mode 100644 index c801da72410a..000000000000 --- a/sci-chemistry/coot/files/coot-0.7-ssm.patch +++ /dev/null @@ -1,56 +0,0 @@ - macros/mmdb-ssm.m4 | 42 +----------------------------------------- - 1 files changed, 1 insertions(+), 41 deletions(-) - -diff --git a/macros/mmdb-ssm.m4 b/macros/mmdb-ssm.m4 -index 1937a16..6ef547c 100644 ---- a/macros/mmdb-ssm.m4 -+++ b/macros/mmdb-ssm.m4 -@@ -22,47 +22,7 @@ - AC_DEFUN([AM_WITH_MMDBSSM], - [AC_PROVIDE([AM_USE_MMDBSSM]) - -- --AC_ARG_WITH(ssmlib-prefix, -- AC_HELP_STRING( [--with-ssmlib-prefix=PFX], [Prefix where SSMLib has been installed] ), -- [ with_ssmlib_prefix="$withval" ], -- with_ssmlib_prefix="") -- --AC_MSG_CHECKING([for SSMLib]) -- --if test x$with_ssmlib_prefix != x; then -- -- MMDBSSM_CXXFLAGS="-DHAVE_SSMLIB" -- MMDBSSM_LIBS="-L$with_ssmlib_prefix/$acl_libdirstem -lssm" -- --ac_mmdb_dirs=' --. --include --include/ssm --include/mmdb --lib --src --lib/src --lib/src/mmdb' -- -- for ac_dir in $ac_mmdb_dirs; do -- if test -r "$with_ssmlib_prefix/$ac_dir/ssm_superpose.h"; then -- ac_MMDBSSM_CXXFLAGS="-I$with_ssmlib_prefix/$ac_dir" -- break -- fi -- done -- -- MMDBSSM_CXXFLAGS="$MMDBSSM_CXXFLAGS $ac_MMDBSSM_CXXFLAGS" -- --else -- -- MMDBSSM_CXXFLAGS="" -- MMDBSSM_LIBS="" -- with_ssmlib_prefix=no -- --fi -- --AC_MSG_RESULT([$with_ssmlib_prefix]) -+PKG_CHECK_MODULES([MMDBSSM],[ssm]) - - AC_SUBST(MMDBSSM_CXXFLAGS) - AC_SUBST(MMDBSSM_LIBS) diff --git a/sci-chemistry/dssp/files/Makefile b/sci-chemistry/dssp/files/Makefile deleted file mode 100644 index 575202ebbe2d..000000000000 --- a/sci-chemistry/dssp/files/Makefile +++ /dev/null @@ -1,7 +0,0 @@ -#OBJ = AccSurf.o CalcAccSurf.o Contacts.o Date.o Dssp.o DsspCMBI.o p2clib.o Vector.o -OBJ = AccSurf.o CalcAccSurf.o Contacts.o Date.o DsspCMBI.o p2clib.o Vector.o - -LIBS = -lm - -dssp: $(OBJ) - $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(OBJ) $(LIBS) diff --git a/sci-chemistry/easychem/files/easychem-0.6-prestrip.patch b/sci-chemistry/easychem/files/easychem-0.6-prestrip.patch deleted file mode 100644 index a1cbbb055d0c..000000000000 --- a/sci-chemistry/easychem/files/easychem-0.6-prestrip.patch +++ /dev/null @@ -1,10 +0,0 @@ ---- Makefile.linux.orig 2009-02-23 21:17:25.000000000 +0200 -+++ Makefile.linux 2009-02-23 21:17:50.000000000 +0200 -@@ -29,7 +29,6 @@ - - easychem: postscript/ graph/ $(OBJECTS) - $(CC) -o easychem $(OBJECTS) $(GTK_LIBS) $(C_FLAGS) -- strip easychem - - clean: FORCE - -cd graph; make clean diff --git a/sci-chemistry/gabedit/files/gabedit-2.4.2-gold.patch b/sci-chemistry/gabedit/files/gabedit-2.4.2-gold.patch deleted file mode 100644 index 68823d0d7663..000000000000 --- a/sci-chemistry/gabedit/files/gabedit-2.4.2-gold.patch +++ /dev/null @@ -1,16 +0,0 @@ - Makefile | 2 +- - 1 files changed, 1 insertions(+), 1 deletions(-) - -diff --git a/Makefile b/Makefile -index ae08e60..eee2b46 100644 ---- a/Makefile -+++ b/Makefile -@@ -62,7 +62,7 @@ all: gabedit - gabedit: $(SUBDIRS) - $(MKDIR) tmp - cp $(OBJECTS) tmp -- $(CC) $(LDFLAGS) tmp/*.o -o gabedit $(GLTOPS) $(X11LIB) $(GTKLIB) $(OGLLIB) $(JPEGLIB) $(LIBPTHREAD) $(WIN32LIB) $(OMPLIB) -g -+ $(CC) $(LDFLAGS) tmp/*.o -o gabedit $(GLTOPS) $(X11LIB) $(GTKLIB) $(OGLLIB) $(JPEGLIB) $(LIBPTHREAD) $(WIN32LIB) $(OMPLIB) -g -lm - @$(RMTMP) > ptmp - rmdir tmp - @$(RM) ptmp diff --git a/sci-chemistry/ghemical/files/ghemical-gcc43.patch b/sci-chemistry/ghemical/files/ghemical-gcc43.patch deleted file mode 100644 index 93557d48720c..000000000000 --- a/sci-chemistry/ghemical/files/ghemical-gcc43.patch +++ /dev/null @@ -1,14 +0,0 @@ ---- src-orig/pangofont_wcl.cpp 2008-11-30 16:15:23.932475487 -0600 -+++ src/pangofont_wcl.cpp 2008-11-30 16:16:09.620396370 -0600 -@@ -22,6 +22,10 @@ - - #include - -+#include -+ -+#include -+using namespace std; - /*################################################################################################*/ - - pangofont_wcl::pangofont_wcl(ogl_camera * cam) : - diff --git a/sci-chemistry/gsim/files/0.20.1-build.conf.patch b/sci-chemistry/gsim/files/0.20.1-build.conf.patch deleted file mode 100644 index e0c68d222323..000000000000 --- a/sci-chemistry/gsim/files/0.20.1-build.conf.patch +++ /dev/null @@ -1,44 +0,0 @@ - gsim.pro | 25 +++++++++++++++---------- - 1 files changed, 15 insertions(+), 10 deletions(-) - -diff --git a/gsim.pro b/gsim.pro -index 7316aee..9278b6a 100755 ---- a/gsim.pro -+++ b/gsim.pro -@@ -16,21 +16,26 @@ - #CONFIG+=use_script - - # Change directories locations for libcmatrix, MinUIT and muParser libraries --unix:INCLUDEPATH += /home/vjuser/gsim/libcmatrixR3/include \ -- /home/vjuser/gsim/Minuit2/include \ -- /usr/include/muParser -+#unix:INCLUDEPATH += /home/vjuser/gsim/libcmatrixR3/include \ -+# /home/vjuser/gsim/Minuit2/include \ -+# /usr/include/muParser - --win32:INCLUDEPATH += "C:\gsim\libcmatrixR3\include" "C:\gsim\Minuit2\include" "C:\gsim\muparser\include" -+#win32:INCLUDEPATH += "C:\gsim\libcmatrixR3\include" "C:\gsim\Minuit2\include" "C:\gsim\muparser\include" - --unix:LIBS += -lcmatrix -L/home/vjuser/gsim/libcmatrixR3/lib -lMinuit2 -L/home/vjuser/gsim/Minuit2/lib -L/home/vjuser/gsim/muparser/lib -lmuparser -+#unix:LIBS += -lcmatrix -L/home/vjuser/gsim/libcmatrixR3/lib -lMinuit2 -L/home/vjuser/gsim/Minuit2/lib -L/home/vjuser/gsim/muparser/lib -lmuparser - --win32:LIBS += -lcmatrix -L"C:\gsim\libcmatrixR3\lib" -lMinuit2 -L"C:\gsim\Minuit2\lib" -L"C:\gsim\muparser\lib" -lmuparser -+#win32:LIBS += -lcmatrix -L"C:\gsim\libcmatrixR3\lib" -lMinuit2 -L"C:\gsim\Minuit2\lib" -L"C:\gsim\muparser\lib" -lmuparser - - #Change directories location for libEMF (if used) --use_emf { -- DEFINES+=USE_EMF_OUTPUT -- unix:LIBS +=-lEMF -L/usr/include/libEmf -- win32:LIBS +=-lgdi32 -+#use_emf { -+# DEFINES+=USE_EMF_OUTPUT -+# unix:LIBS +=-lEMF -L/usr/include/libEmf -+# win32:LIBS +=-lgdi32 -+#} -+ -+GSIM_ROOT = . -+!include( $$GSIM_ROOT/build.conf ) { -+ message( "You need a build.conf file with local settings!" ) - } - - ################################################################################################# diff --git a/sci-chemistry/gsim/files/gsim-21.0-build.conf.patch b/sci-chemistry/gsim/files/gsim-21.0-build.conf.patch deleted file mode 100644 index cbd529a49ac4..000000000000 --- a/sci-chemistry/gsim/files/gsim-21.0-build.conf.patch +++ /dev/null @@ -1,42 +0,0 @@ - gsim.pro | 23 ++++++++++++++--------- - 1 file changed, 14 insertions(+), 9 deletions(-) - -diff --git a/gsim.pro b/gsim.pro -index f06e5d2..6e28178 100755 ---- a/gsim.pro -+++ b/gsim.pro -@@ -16,20 +16,25 @@ - #CONFIG+=use_script - - # Change directories locations for libcmatrix, MinUIT and muParser libraries --unix:INCLUDEPATH += /home/dch1vz/libcmatrixR3/include \ -- /home/dch1vz/Minuit2/include \ -+#unix:INCLUDEPATH += /home/dch1vz/libcmatrixR3/include \ -+# /home/dch1vz/Minuit2/include \ - --win32:INCLUDEPATH += "C:\gsim\libcmatrixR3\include" "C:\gsim\Minuit2\include" "C:\gsim\muparser\include" -+#win32:INCLUDEPATH += "C:\gsim\libcmatrixR3\include" "C:\gsim\Minuit2\include" "C:\gsim\muparser\include" - --unix:LIBS += -lcmatrix -L/home/dch1vz/libcmatrixR3/lib -lMinuit2Base -L/home/dch1vz/Minuit2/lib -lmuparser -+#unix:LIBS += -lcmatrix -L/home/dch1vz/libcmatrixR3/lib -lMinuit2Base -L/home/dch1vz/Minuit2/lib -lmuparser - --win32:LIBS += -lcmatrix -L"C:\gsim\libcmatrixR3\lib" -lMinuit2 -L"C:\gsim\Minuit2\lib" -L"C:\gsim\muparser\lib" -lmuparser -+#win32:LIBS += -lcmatrix -L"C:\gsim\libcmatrixR3\lib" -lMinuit2 -L"C:\gsim\Minuit2\lib" -L"C:\gsim\muparser\lib" -lmuparser - - #Change directories location for libEMF (if used) --use_emf { -- DEFINES+=USE_EMF_OUTPUT -- unix:LIBS +=-lEMF -L/usr/include/libEmf -- win32:LIBS +=-lgdi32 -+#use_emf { -+# DEFINES+=USE_EMF_OUTPUT -+# unix:LIBS +=-lEMF -L/usr/include/libEmf -+# win32:LIBS +=-lgdi32 -+#} -+ -+GSIM_ROOT = . -+!include( $$GSIM_ROOT/build.conf ) { -+ message( "You need a build.conf file with local settings!" ) - } - - ################################################################################################# diff --git a/sci-chemistry/mead/files/mead-2.2.7-respect-cflags.patch b/sci-chemistry/mead/files/mead-2.2.7-respect-cflags.patch deleted file mode 100644 index 61c54737778e..000000000000 --- a/sci-chemistry/mead/files/mead-2.2.7-respect-cflags.patch +++ /dev/null @@ -1,57 +0,0 @@ -diff -Naur mead-2.2.7-orig/apps/libmso/Makefile.in mead-2.2.7/apps/libmso/Makefile.in ---- mead-2.2.7-orig/apps/libmso/Makefile.in 2004-12-10 14:33:49.000000000 -0600 -+++ mead-2.2.7/apps/libmso/Makefile.in 2009-02-15 16:32:40.000000000 -0600 -@@ -35,8 +35,8 @@ - INSTALL_PROGRAM = @INSTALL_PROGRAM@ - - ALL_CPPFLAGS = -I. $(LOCALINCS) $(CPPFLAGS) $(REGEX_CPP) $(CXX_DEFS) --ALL_CXXFLAGS = $(CXX_OPTFLAGS) $(CXX_DEBUGFLAGS) --ALL_CFLAGS = $(CC_DEBUGFLAGS) $(CC_OPTFLAGS) -+ALL_CXXFLAGS = @CXXFLAGS@ -+ALL_CFLAGS = @CFLAGS@ - - .SUFFIXES: - .SUFFIXES: .cc .o -diff -Naur mead-2.2.7-orig/apps/Makefile.common.in mead-2.2.7/apps/Makefile.common.in ---- mead-2.2.7-orig/apps/Makefile.common.in 2004-11-19 16:49:56.000000000 -0600 -+++ mead-2.2.7/apps/Makefile.common.in 2009-02-15 16:32:22.000000000 -0600 -@@ -36,10 +36,10 @@ - LIBS = @LIBS@ -lm - - ALL_CPPFLAGS = -I. $(LOCALINCS) $(CPPFLAGS) $(REGEX_CPP) $(CXX_DEFS) --ALL_CXXFLAGS = $(CXX_OPTFLAGS) $(CXX_DEBUGFLAGS) --ALL_CFLAGS = $(CC_DEBUGFLAGS) $(CC_OPTFLAGS) -+ALL_CXXFLAGS = @CXXFLAGS@ -+ALL_CFLAGS = @CFLAGS@ - --CXXLINK = $(CXX) $(ALL_CPPFLAGS) $(CXX_DEBUGFLAGS) $(CXX_OPTFLAGS) \ -+CXXLINK = $(CXX) $(ALL_CPPFLAGS) @CXXFLAGS@ \ - $(LDFLAGS) - - .SUFFIXES: .cc .o -diff -Naur mead-2.2.7-orig/libmead/Makefile.in mead-2.2.7/libmead/Makefile.in ---- mead-2.2.7-orig/libmead/Makefile.in 2008-03-04 14:18:22.000000000 -0600 -+++ mead-2.2.7/libmead/Makefile.in 2009-02-15 16:31:56.000000000 -0600 -@@ -99,8 +99,8 @@ - INCLUDES = -I$(top_srcdir) - - ALL_CPPFLAGS = $(INCLUDES) $(CPPFLAGS) $(REGEX_CPP) $(CXX_DEFS) --ALL_CXXFLAGS = $(CXX_OPTFLAGS) $(CXX_DEBUGFLAGS) $(CXX_SHAREDFLAGS) --ALL_CFLAGS = $(CC_DEBUGFLAGS) $(CC_OPTFLAGS) -+ALL_CXXFLAGS = @CXXFLAGS@ -+ALL_CFLAGS = @CFLAGS@ - - - -diff -Naur mead-2.2.7-orig/swig/Makefile.in mead-2.2.7/swig/Makefile.in ---- mead-2.2.7-orig/swig/Makefile.in 2007-11-27 15:57:17.000000000 -0600 -+++ mead-2.2.7/swig/Makefile.in 2009-02-15 16:34:35.000000000 -0600 -@@ -58,7 +58,7 @@ - CXX_FLAGS = @CXX_NOOPTFLAGS@ @CXX_DEBUGFLAGS@ @CXX_SHAREDFLAGS@ - CXX_DYNLIB_FLAGS = @CXX_DYNLIB_FLAGS@ - --ALL_CXXFLAGS = $(CPP_FLAGS) $(CXX_FLAGS) -+ALL_CXXFLAGS = $(CPP_FLAGS) @CXXFLAGS@ @CXX_SHAREDFLAGS@ - - MEADINC = -I$(top_srcdir) -I$(srcdir) - MEADLIBS = -L../libmead -lmead diff --git a/sci-chemistry/namd/files/namd-2.6-gentoo.patch b/sci-chemistry/namd/files/namd-2.6-gentoo.patch deleted file mode 100644 index 9a71de8d3bd7..000000000000 --- a/sci-chemistry/namd/files/namd-2.6-gentoo.patch +++ /dev/null @@ -1,107 +0,0 @@ -diff -Naur NAMD_2.6_Source/Makefile NAMD_2.6_Source.new/Makefile ---- NAMD_2.6_Source/Makefile 2006-08-30 00:19:25.000000000 -0400 -+++ NAMD_2.6_Source.new/Makefile 2006-09-19 15:56:17.000000000 -0400 -@@ -232,10 +232,10 @@ - $(DSTDIR)/stringhash.o - - # definitions for Charm routines --CHARMC = $(CHARM)/bin/charmc --CHARMXI = $(CHARM)/bin/charmc --CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1 --CHARMLIB = $(CHARM)/lib -+CHARMC = /usr/bin/charmc -+CHARMXI = /usr/bin/charmc -+CHARMINC = /usr/include/charm-5.9 $(COPTD)CMK_OPTIMIZE=1 -+CHARMLIB = /usr/lib - - # Libraries we may have changed - LIBS = $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL) -@@ -255,7 +255,7 @@ - - # Add new executables here. - --BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb -+BINARIES = namd2 psfgen flipdcd flipbinpdb - - # This should be rebuilt at every compile, but not on Win32. - BUILDINFO = $(DSTDIR)/buildinfo -@@ -284,11 +284,6 @@ - $(CHARMOPTS) \ - -lm -o namd2 - --charmrun: $(CHARM)/bin/charmrun # XXX -- $(COPY) $(CHARM)/bin/charmrun $@ -- --windowsbinaries: namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe -- - namd2.exe: $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) - $(MAKEBUILDINFO) - $(CHARMC) -verbose \ -@@ -309,9 +304,6 @@ - charmd_faceless.exe: - $(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe - --charmrun.exe: -- $(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe -- - psfgen: $(DSTDIR) $(SBOBJS) - $(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(TCLLIB) $(TCLAPPLIB) -lm - -@@ -571,9 +563,7 @@ - - DOC_FILES = README.txt announce.txt license.txt notes.txt - --RELEASE_FILES = flipdcd flipbinpdb psfgen charmrun namd2 -- --WIN32_RELEASE_FILES = namd2.exe psfgen.exe charmrun.exe charmd.exe charmd_faceless.exe $(TCLDLL) -+RELEASE_FILES = flipdcd flipbinpdb psfgen namd2 - - release: all - $(ECHO) Creating release $(RELEASE_DIR_NAME) -@@ -582,17 +572,9 @@ - for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done - cp -r .rootdir/lib $(RELEASE_DIR_NAME) - /bin/rm -rf $(RELEASE_DIR_NAME)/lib/CVS $(RELEASE_DIR_NAME)/lib/*/CVS -- if [ -r $(CHARM)/bin/charmd ]; then \ -- $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \ -- fi -- if [ -r $(CHARM)/bin/charmd_faceless ]; then \ -- $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \ -- fi - chmod -R a+rX $(RELEASE_DIR_NAME) - tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME) - gzip $(RELEASE_DIR_NAME).tar -- echo $(CHARM) -- ls -l $(CHARM)/lib - -for f in $(RELEASE_FILES); do echo $$f; $(LDD) $$f; done - - winrelease: winall -diff -Naur NAMD_2.6_Source/arch/Linux-i686.fftw NAMD_2.6_Source.new/arch/Linux-i686.fftw ---- NAMD_2.6_Source/arch/Linux-i686.fftw 2004-02-20 17:38:36.000000000 -0500 -+++ NAMD_2.6_Source.new/arch/Linux-i686.fftw 2006-09-19 15:52:32.000000000 -0400 -@@ -1,7 +1,7 @@ - --FFTDIR=/Projects/namd2/fftw/linux --FFTINCL=-I$(FFTDIR)/include -I$(HOME)/fftw/include --FFTLIB=-L$(FFTDIR)/lib -L$(HOME)/fftw/lib -lsrfftw -lsfftw -+#FFTDIR=/Projects/namd2/fftw/linux -+FFTINCL=-I/usr/include -+FFTLIB=-L/usr/lib -lsrfftw -lsfftw - FFTFLAGS=-DNAMD_FFTW - FFT=$(FFTINCL) $(FFTFLAGS) - -diff -Naur NAMD_2.6_Source/arch/Linux-i686.tcl NAMD_2.6_Source.new/arch/Linux-i686.tcl ---- NAMD_2.6_Source/arch/Linux-i686.tcl 2004-10-27 17:40:55.000000000 -0400 -+++ NAMD_2.6_Source.new/arch/Linux-i686.tcl 2006-09-19 15:56:45.000000000 -0400 -@@ -1,8 +1,8 @@ - --TCLDIR=/Projects/namd2/tcl/linux -+#TCLDIR=/Projects/namd2/tcl/linux - #TCLDIR=$(HOME)/tcl/cray-xt3 --TCLINCL=-I$(TCLDIR)/include -I$(HOME)/tcl/include --TCLLIB=-L$(TCLDIR)/lib -L$(HOME)/tcl/lib -ltcl8.3 -ldl -+TCLINCL=-I/usr/include -+TCLLIB=-L/usr/lib -L$(HOME)/tcl/lib -ltcl -ldl - TCLFLAGS=-DNAMD_TCL -DUSE_NON_CONST - TCL=$(TCLINCL) $(TCLFLAGS) - diff --git a/sci-chemistry/namd/files/namd-2.7-gentoo.patch b/sci-chemistry/namd/files/namd-2.7-gentoo.patch deleted file mode 100644 index 28a580e3113c..000000000000 --- a/sci-chemistry/namd/files/namd-2.7-gentoo.patch +++ /dev/null @@ -1,117 +0,0 @@ -diff -aurN NAMD_2.7b1_Source.orig/Make.charm NAMD_2.7b1_Source/Make.charm ---- NAMD_2.7b1_Source.orig/Make.charm 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/Make.charm 2009-06-07 15:15:11.000000000 -0500 -@@ -2,5 +2,5 @@ - # The config script will override this setting if there is a directory - # called charm-6.1 or charm in the NAMD base directory. - --CHARMBASE = /Projects/namd2/charm-6.1 -+CHARMBASE = /usr/include/charm-6.1.2 - -diff -aurN NAMD_2.7b1_Source.orig/Makefile NAMD_2.7b1_Source/Makefile ---- NAMD_2.7b1_Source.orig/Makefile 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/Makefile 2009-06-07 15:15:11.000000000 -0500 -@@ -297,10 +297,10 @@ - $(DSTDIR)/stringhash.o - - # definitions for Charm routines --CHARMC = $(CHARM)/bin/charmc --CHARMXI = $(CHARM)/bin/charmc --CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1 --CHARMLIB = $(CHARM)/lib -+CHARMC = /usr/bin/charmc -+CHARMXI = /usr/bin/charmc -+CHARMINC = /usr/include/gentoo-charm $(COPTD)CMK_OPTIMIZE=1 -+CHARMLIB = /usr/gentoo-libdir - - # Libraries we may have changed - LIBS = $(CUDAOBJS) $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL) -@@ -320,7 +320,7 @@ - - # Add new executables here. - --BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb -+BINARIES = namd2 psfgen flipdcd flipbinpdb - - # This should be rebuilt at every compile, but not on Win32. - BUILDINFO = $(DSTDIR)/buildinfo -@@ -351,14 +351,6 @@ - $(CHARMOPTS) \ - -lm -o namd2 - --charmrun: $(CHARM)/bin/charmrun # XXX -- $(COPY) $(CHARM)/bin/charmrun $@ -- --WINDOWSBINARIES = namd2.exe psfgen.exe --# WINDOWSBINARIES = namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe -- --windowsbinaries: $(WINDOWSBINARIES) -- - namd2.exe: $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) $(TCLDLL) - $(MAKEBUILDINFO) - $(CHARMC) -verbose \ -@@ -381,9 +373,6 @@ - charmd_faceless.exe: - $(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe - --charmrun.exe: -- $(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe -- - psfgen: $(DSTDIR) $(SBOBJS) $(PLUGINOBJS) - $(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm - -@@ -700,9 +689,7 @@ - - DOC_FILES = README.txt announce.txt license.txt notes.txt - --RELEASE_FILES = flipdcd flipbinpdb psfgen charmrun namd2 -- --WINDOWS_RELEASE_FILES = $(WINDOWSBINARIES) $(TCLDLL) -+RELEASE_FILES = flipdcd flipbinpdb psfgen namd2 - - release: all - $(ECHO) Creating release $(RELEASE_DIR_NAME) -@@ -711,17 +698,9 @@ - for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done - cp -r .rootdir/lib $(RELEASE_DIR_NAME) - /bin/rm -rf $(RELEASE_DIR_NAME)/lib/CVS $(RELEASE_DIR_NAME)/lib/*/CVS -- if [ -r $(CHARM)/bin/charmd ]; then \ -- $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \ -- fi -- if [ -r $(CHARM)/bin/charmd_faceless ]; then \ -- $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \ -- fi - chmod -R a+rX $(RELEASE_DIR_NAME) - tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME) - gzip $(RELEASE_DIR_NAME).tar -- echo $(CHARM) -- ls -l $(CHARM)/lib - -for f in $(RELEASE_FILES); do echo $$f; $(LDD) $$f; done - - winrelease: winall -diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw NAMD_2.7b1_Source/arch/Linux-x86_64.fftw ---- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/arch/Linux-x86_64.fftw 2009-06-07 15:15:11.000000000 -0500 -@@ -1,7 +1,7 @@ - --FFTDIR=/Projects/namd2/fftw/linux-x86_64 -+FFTDIR=/usr - FFTINCL=-I$(FFTDIR)/include --FFTLIB=-L$(FFTDIR)/lib -lsrfftw -lsfftw -+FFTLIB=-L$(FFTDIR)/gentoo-libdir -lsrfftw -lsfftw - FFTFLAGS=-DNAMD_FFTW - FFT=$(FFTINCL) $(FFTFLAGS) - -diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl NAMD_2.7b1_Source/arch/Linux-x86_64.tcl ---- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/arch/Linux-x86_64.tcl 2009-06-07 18:25:07.000000000 -0500 -@@ -1,7 +1,7 @@ - --TCLDIR=/Projects/namd2/tcl/linux-x86_64 -+TCLDIR=/usr - TCLINCL=-I$(TCLDIR)/include --TCLLIB=-L$(TCLDIR)/lib -ltcl8.3 -ldl -+TCLLIB=-L$(TCLDIR)/gentoo-libdir -ltcl -ldl - TCLFLAGS=-DNAMD_TCL - TCL=$(TCLINCL) $(TCLFLAGS) - diff --git a/sci-chemistry/namd/files/namd-2.7-ldflags.patch b/sci-chemistry/namd/files/namd-2.7-ldflags.patch deleted file mode 100644 index 686eba83a2de..000000000000 --- a/sci-chemistry/namd/files/namd-2.7-ldflags.patch +++ /dev/null @@ -1,41 +0,0 @@ -diff --git a/Makefile b/Makefile -index fd20f12..0821bed 100644 ---- a/Makefile -+++ b/Makefile -@@ -339,7 +339,7 @@ all: $(BINARIES) $(LIBCUDARTSO) - - namd2: $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) - $(MAKEBUILDINFO) -- $(CHARMC) -verbose -ld++-option \ -+ $(CHARMC) $(LDFLAGS) -verbose -ld++-option \ - "$(COPTI)$(CHARMINC) $(COPTI)$(INCDIR) $(COPTI)$(SRCDIR) $(CXXOPTS)" \ - -module NeighborLB -module commlib -language charm++ \ - $(BUILDINFO).o \ -@@ -394,23 +394,23 @@ charmrun.exe: - $(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe - - psfgen: $(DSTDIR) $(SBOBJS) $(PLUGINOBJS) -- $(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm -+ $(CC) $(SBCFLAGS) $(LDFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm - - psfgen.exe: $(DSTDIR) $(SBOBJS) $(PLUGINOBJS) $(TCLDLL) - $(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm - - flipdcd: $(SRCDIR)/flipdcd.c -- $(CC) $(CFLAGS) -o $@ $(SRCDIR)/flipdcd.c || \ -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(SRCDIR)/flipdcd.c || \ - echo "#!/bin/sh\necho unavailable on this platform" > $@; \ - chmod +x $@ - - flipbinpdb: $(SRCDIR)/flipbinpdb.c -- $(CC) $(CFLAGS) -o $@ $(SRCDIR)/flipbinpdb.c || \ -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(SRCDIR)/flipbinpdb.c || \ - echo "#!/bin/sh\necho unavailable on this platform" > $@; \ - chmod +x $@ - - fixdcd: $(SRCDIR)/fixdcd.c -- $(CC) $(CFLAGS) -o fixdcd $(SRCDIR)/fixdcd.c -+ $(CC) $(CFLAGS) $(LDFLAGS) -o fixdcd $(SRCDIR)/fixdcd.c - - dumpdcd: $(SRCDIR)/dumpdcd.c - $(CC) $(CFLAGS) -o dumpdcd $(SRCDIR)/dumpdcd.c diff --git a/sci-chemistry/namd/files/namd-2.7_beta2-gentoo.patch b/sci-chemistry/namd/files/namd-2.7_beta2-gentoo.patch deleted file mode 100644 index 898d6b5d0980..000000000000 --- a/sci-chemistry/namd/files/namd-2.7_beta2-gentoo.patch +++ /dev/null @@ -1,126 +0,0 @@ -diff -ur NAMD_2.7b2_Source.orig//arch/Linux-x86_64.fftw NAMD_2.7b2_Source//arch/Linux-x86_64.fftw ---- NAMD_2.7b2_Source.orig//arch/Linux-x86_64.fftw 2010-04-23 14:40:54.566510874 -0500 -+++ NAMD_2.7b2_Source//arch/Linux-x86_64.fftw 2010-04-23 14:41:08.106528893 -0500 -@@ -1,7 +1,7 @@ - --FFTDIR=/Projects/namd2/fftw/linux-x86_64 -+FFTDIR=/usr - FFTINCL=-I$(FFTDIR)/include --FFTLIB=-L$(FFTDIR)/lib -lsrfftw -lsfftw -+FFTLIB=-L$(FFTDIR)/gentoo-libdir -lsrfftw -lsfftw - FFTFLAGS=-DNAMD_FFTW - FFT=$(FFTINCL) $(FFTFLAGS) - -diff -ur NAMD_2.7b2_Source.orig//arch/Linux-x86_64.tcl NAMD_2.7b2_Source//arch/Linux-x86_64.tcl ---- NAMD_2.7b2_Source.orig//arch/Linux-x86_64.tcl 2010-04-23 14:40:54.566510874 -0500 -+++ NAMD_2.7b2_Source//arch/Linux-x86_64.tcl 2010-04-23 14:41:08.106528893 -0500 -@@ -1,7 +1,7 @@ - --TCLDIR=/Projects/namd2/tcl/linux-x86_64 -+TCLDIR=/usr - TCLINCL=-I$(TCLDIR)/include --TCLLIB=-L$(TCLDIR)/lib -ltcl8.3 -ldl -+TCLLIB=-L$(TCLDIR)/gentoo-libdir -ltcl8.5 -ldl - TCLFLAGS=-DNAMD_TCL - TCL=$(TCLINCL) $(TCLFLAGS) - -diff -ur NAMD_2.7b2_Source.orig//Make.charm NAMD_2.7b2_Source//Make.charm ---- NAMD_2.7b2_Source.orig//Make.charm 2010-04-23 14:40:54.556517020 -0500 -+++ NAMD_2.7b2_Source//Make.charm 2010-04-23 14:42:16.026530011 -0500 -@@ -2,5 +2,5 @@ - # The config script will override this setting if there is a directory - # called charm-6.1 or charm in the NAMD base directory. - --CHARMBASE = /Projects/namd2/charm-6.1.3 -+CHARMBASE = /usr/include/charm-6.1.3 - -Only in NAMD_2.7b2_Source/: Make.charm.~1~ -Only in NAMD_2.7b2_Source/: Make.charm.porig -diff -ur NAMD_2.7b2_Source.orig//Makefile NAMD_2.7b2_Source//Makefile ---- NAMD_2.7b2_Source.orig//Makefile 2010-04-23 14:40:54.556517020 -0500 -+++ NAMD_2.7b2_Source//Makefile 2010-04-23 14:42:59.446523306 -0500 -@@ -300,10 +300,10 @@ - $(DSTDIR)/stringhash.o - - # definitions for Charm routines --CHARMC = $(CHARM)/bin/charmc --CHARMXI = $(CHARM)/bin/charmc --CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1 --CHARMLIB = $(CHARM)/lib -+CHARMC = /usr/bin/charmc -+CHARMXI = /usr/bin/charmc -+CHARMINC = /usr/include/gentoo-charm $(COPTD)CMK_OPTIMIZE=1 -+CHARMLIB = /usr/gentoo-libdir - - # Libraries we may have changed - LIBS = $(CUDAOBJS) $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL) -@@ -323,7 +323,7 @@ - - # Add new executables here. - --BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb -+BINARIES = namd2 psfgen flipdcd flipbinpdb - - # This should be rebuilt at every compile, but not on Win32. - BUILDINFO = $(DSTDIR)/buildinfo -@@ -354,9 +354,6 @@ - $(CHARMOPTS) \ - -lm -o namd2 - --charmrun: $(CHARM)/bin/charmrun # XXX -- $(COPY) $(CHARM)/bin/charmrun $@ -- - $(LIBCUDARTSO): - if [ -r $(CUDADIR)/lib64/$(LIBCUDARTSO) ]; then \ - $(COPY) $(CUDADIR)/lib64/$(LIBCUDARTSO) $@; \ -@@ -364,10 +361,6 @@ - $(COPY) $(CUDADIR)/lib/$(LIBCUDARTSO) $@; \ - fi - --WINDOWSBINARIES = namd2.exe psfgen.exe --# WINDOWSBINARIES = namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe --windowsbinaries: $(WINDOWSBINARIES) -- - namd2.exe: $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) $(TCLDLL) - $(MAKEBUILDINFO) - $(CHARMC) -verbose \ -@@ -390,9 +383,6 @@ - charmd_faceless.exe: - $(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe - --charmrun.exe: -- $(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe -- - psfgen: $(DSTDIR) $(SBOBJS) $(PLUGINOBJS) - $(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm - -@@ -716,9 +706,7 @@ - - DOC_FILES = README.txt announce.txt license.txt notes.txt - --RELEASE_FILES = $(LIBCUDARTSO) flipdcd flipbinpdb psfgen charmrun namd2 -- --WINDOWS_RELEASE_FILES = $(WINDOWSBINARIES) $(TCLDLL) -+RELEASE_FILES = $(LIBCUDARTSO) flipdcd flipbinpdb psfgen namd2 - - release: all - $(ECHO) Creating release $(RELEASE_DIR_NAME) -@@ -727,17 +715,9 @@ - for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done - cp -r .rootdir/lib $(RELEASE_DIR_NAME) - /bin/rm -rf $(RELEASE_DIR_NAME)/lib/CVS $(RELEASE_DIR_NAME)/lib/*/CVS -- if [ -r $(CHARM)/bin/charmd ]; then \ -- $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \ -- fi -- if [ -r $(CHARM)/bin/charmd_faceless ]; then \ -- $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \ -- fi - chmod -R a+rX $(RELEASE_DIR_NAME) - tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME) - gzip $(RELEASE_DIR_NAME).tar -- echo $(CHARM) -- ls -l $(CHARM)/lib - -for f in $(RELEASE_FILES); do echo $$f; $(LDD) $$f; done - - winrelease: winall -Only in NAMD_2.7b2_Source/: Makefile.porig diff --git a/sci-chemistry/namd/files/namd-barrier-fix-gentoo.patch b/sci-chemistry/namd/files/namd-barrier-fix-gentoo.patch deleted file mode 100644 index 40e8e68b5ba3..000000000000 --- a/sci-chemistry/namd/files/namd-barrier-fix-gentoo.patch +++ /dev/null @@ -1,61 +0,0 @@ -# patch to fix compile error on gcc-3.x - -diff -Naur NAMD_2.6b1_Source/src/BackEnd.C NAMD_2.6b1_Source_patched/src/BackEnd.C ---- NAMD_2.6b1_Source/src/BackEnd.C 2003-12-31 06:37:15.000000000 +0000 -+++ NAMD_2.6b1_Source_patched/src/BackEnd.C 2005-08-22 18:59:59.000000000 +0000 -@@ -162,7 +162,7 @@ - } - - // start QD and scheduler --void BackEnd::barrier(void) { -+void BackEnd::namd_barrier(void) { - awaken(); - suspend(); - } -diff -Naur NAMD_2.6b1_Source/src/BackEnd.h NAMD_2.6b1_Source_patched/src/BackEnd.h ---- NAMD_2.6b1_Source/src/BackEnd.h 2000-01-29 00:20:05.000000000 +0000 -+++ NAMD_2.6b1_Source_patched/src/BackEnd.h 2005-08-22 18:59:47.000000000 +0000 -@@ -17,7 +17,7 @@ - - static void suspend(void); // Let message code run... - static void awaken(void); // ...then return -- static void barrier(void); // Let message code run, then return -+ static void namd_barrier(void); // Let message code run, then return - static void ExitSchedOn(int pe); // Tell a remote processor to stop - // his scheduler - -diff -Naur NAMD_2.6b1_Source/src/ScriptTcl.C NAMD_2.6b1_Source_patched/src/ScriptTcl.C ---- NAMD_2.6b1_Source/src/ScriptTcl.C 2005-06-23 18:47:00.000000000 +0000 -+++ NAMD_2.6b1_Source_patched/src/ScriptTcl.C 2005-08-22 19:00:21.000000000 +0000 -@@ -56,7 +56,7 @@ - } - - void ScriptTcl::barrier() { -- BackEnd::barrier(); -+ BackEnd::namd_barrier(); - } - - void ScriptTcl::initcheck() { -diff -Naur NAMD_2.6b1_Source/src/main.C NAMD_2.6b1_Source_patched/src/main.C ---- NAMD_2.6b1_Source/src/main.C 2005-05-27 22:56:49.000000000 +0000 -+++ NAMD_2.6b1_Source_patched/src/main.C 2005-08-22 19:17:34.000000000 +0000 -@@ -67,7 +67,9 @@ - - #ifndef NOHOSTNAME - iout << iINFO << -- "Sending usage information to NAMD developers via UDP. Sent data is:\n" -+ "Markus says: I don't want to send usage information \n" -+ << endi; -+ iout << iINFO << "to NAMD developers :) Data not sent is:\n" - << endi; - - char sendbuf[TBSOFT_TRACK_MAXLEN]; -@@ -88,7 +90,7 @@ - sprintf(sendbuf, "1 %s %s %s %s %s %s %s", - program, versionnum, platform, numcpus, miscinfo, host, user); - iout << iINFO << sendbuf << "\n" << endi; -- send_dgram(TBSOFT_TRACK_HOST, TBSOFT_TRACK_PORT, sendbuf, strlen(sendbuf)); -+ //send_dgram(TBSOFT_TRACK_HOST, TBSOFT_TRACK_PORT, sendbuf, strlen(sendbuf)); - - #endif - return 0; diff --git a/sci-chemistry/namd/files/namd-fftw-lib-gentoo.patch b/sci-chemistry/namd/files/namd-fftw-lib-gentoo.patch deleted file mode 100644 index 731ea2337e91..000000000000 --- a/sci-chemistry/namd/files/namd-fftw-lib-gentoo.patch +++ /dev/null @@ -1,15 +0,0 @@ -# adjust paths for proper linking to fftw libs - ---- NAMD_2.6b1_Source/arch/Linux-i686.fftw 2004-02-20 22:38:36.000000000 +0000 -+++ NAMD_2.6b1_Source_patched/arch/Linux-i686.fftw 2005-08-22 18:50:38.000000000 +0000 -@@ -1,7 +1,7 @@ - --FFTDIR=/Projects/namd2/fftw/linux --FFTINCL=-I$(FFTDIR)/include -I$(HOME)/fftw/include --FFTLIB=-L$(FFTDIR)/lib -L$(HOME)/fftw/lib -lsrfftw -lsfftw -+#FFTDIR=/Projects/namd2/fftw/linux -+FFTINCL=-I/usr/include -+FFTLIB=-L/usr/lib -lsrfftw -lsfftw - FFTFLAGS=-DNAMD_FFTW - FFT=$(FFTINCL) $(FFTFLAGS) - diff --git a/sci-chemistry/namd/files/namd-makefile-gentoo.patch b/sci-chemistry/namd/files/namd-makefile-gentoo.patch deleted file mode 100644 index 4ee5822ccb8f..000000000000 --- a/sci-chemistry/namd/files/namd-makefile-gentoo.patch +++ /dev/null @@ -1,88 +0,0 @@ -# provide paths for charm++ provided includes/libraries/binaries - ---- NAMD_2.6b1_Source-patched/Makefile 2005-07-22 18:50:58.000000000 +0000 -+++ NAMD_2.6b1_Source/Makefile 2005-09-30 02:28:35.000000000 +0000 -@@ -227,10 +227,10 @@ - $(DSTDIR)/stringhash.o - - # definitions for Charm routines --CHARMC = $(CHARM)/bin/charmc --CHARMXI = $(CHARM)/bin/charmc --CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1 --CHARMLIB = $(CHARM)/lib -+CHARMC = /usr/bin/charmc -+CHARMXI = /usr/bin/charmc -+CHARMINC = /usr/include/charm-5.9 $(COPTD)CMK_OPTIMIZE=1 -+CHARMLIB = /usr/lib - - # Libraries we may have changed - LIBS = $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL) -@@ -250,7 +250,7 @@ - - # Add new executables here. - --BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb -+BINARIES = namd2 psfgen flipdcd flipbinpdb - - # This should be rebuilt at every compile, but not on Win32. - BUILDINFO = $(DSTDIR)/buildinfo -@@ -279,10 +279,7 @@ - $(CHARMOPTS) \ - -lm -o namd2 - --charmrun: $(CHARM)/bin/charmrun # XXX -- $(COPY) $(CHARM)/bin/charmrun $@ -- --win32binaries: namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe -+win32binaries: namd2.exe psfgen.exe charmd.exe charmd_faceless.exe - - namd2.exe: $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) - $(MAKEBUILDINFO) -@@ -304,9 +301,6 @@ - charmd_faceless.exe: - $(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe - --charmrun.exe: -- $(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe -- - psfgen: $(DSTDIR) $(SBOBJS) - $(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(TCLLIB) $(TCLAPPLIB) -lm - -@@ -565,9 +559,9 @@ - - DOC_FILES = README.txt announce.txt license.txt notes.txt - --RELEASE_FILES = namd2 psfgen charmrun flipdcd flipbinpdb -+RELEASE_FILES = namd2 psfgen flipdcd flipbinpdb - --WIN32_RELEASE_FILES = namd2.exe psfgen.exe charmrun.exe charmd.exe charmd_faceless.exe $(TCLDLL) -+WIN32_RELEASE_FILES = namd2.exe psfgen.exe charmd.exe charmd_faceless.exe $(TCLDLL) - - release: all - $(ECHO) Creating release $(RELEASE_DIR_NAME) -@@ -575,18 +569,18 @@ - cp $(RELEASE_FILES) $(RELEASE_DIR_NAME) - for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done - cp -r .rootdir/lib $(RELEASE_DIR_NAME) -- if [ -r $(CHARM)/bin/charmd ]; then \ -- $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \ -+ if [ -r /usr/bin/charmd ]; then \ -+ $(COPY) /usr/bin/charmd $(RELEASE_DIR_NAME); \ - fi -- if [ -r $(CHARM)/bin/charmd_faceless ]; then \ -- $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \ -+ if [ -r /usr/bin/charmd_faceless ]; then \ -+ $(COPY) /usr/bin/charmd_faceless $(RELEASE_DIR_NAME); \ - fi - chmod -R a+rX $(RELEASE_DIR_NAME) - tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME) - gzip $(RELEASE_DIR_NAME).tar -- echo $(CHARM) -- ls -l $(CHARM)/lib -- echo $(CHARM) -+ echo /usr -+ ls -l /usr/lib -+ echo /usr - file $(RELEASE_FILES) - - winrelease: winall diff --git a/sci-chemistry/namd/files/namd-tcl-lib-gentoo.patch b/sci-chemistry/namd/files/namd-tcl-lib-gentoo.patch deleted file mode 100644 index 0e6f0dd337e5..000000000000 --- a/sci-chemistry/namd/files/namd-tcl-lib-gentoo.patch +++ /dev/null @@ -1,16 +0,0 @@ -# adjust paths for proper linking to tcl libs - ---- NAMD_2.6b1_Source/arch/Linux-i686.tcl 2004-10-27 21:40:55.000000000 +0000 -+++ NAMD_2.6b1_Source_patched/arch/Linux-i686.tcl 2005-09-14 20:50:14.000000000 +0000 -@@ -1,8 +1,8 @@ - --TCLDIR=/Projects/namd2/tcl/linux -+#TCLDIR=/Projects/namd2/tcl/linux - #TCLDIR=$(HOME)/tcl/cray-xt3 --TCLINCL=-I$(TCLDIR)/include -I$(HOME)/tcl/include --TCLLIB=-L$(TCLDIR)/lib -L$(HOME)/tcl/lib -ltcl8.3 -ldl -+TCLINCL=-I/usr/include -+TCLLIB=-L/usr/lib -L$(HOME)/tcl/lib -ltcl -ldl - TCLFLAGS=-DNAMD_TCL -DUSE_NON_CONST - TCL=$(TCLINCL) $(TCLFLAGS) - diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch deleted file mode 100644 index 597c9a79c103..000000000000 --- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-makefile.patch +++ /dev/null @@ -1,28 +0,0 @@ - scripts/CMakeLists.txt | 2 +- - scripts/perl/Makefile.PL | 1 + - 2 files changed, 2 insertions(+), 1 deletions(-) - -diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt -index bf2527b..3c45111 100644 ---- a/scripts/CMakeLists.txt -+++ b/scripts/CMakeLists.txt -@@ -223,7 +223,7 @@ if (DO_PERL_BINDINGS) - COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/Makefile.PL ${openbabel_BINARY_DIR}/scripts/perl - COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/OpenBabel.pm ${openbabel_BINARY_DIR}/scripts/perl - COMMAND ${CMAKE_COMMAND} -E copy ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp ${openbabel_BINARY_DIR}/scripts/perl -- COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc SRC_DIR=${openbabel_SOURCE_DIR} OBJ_DIR=${openbabel_BINARY_DIR} ${PERL_EXECUTABLE} ${openbabel_BINARY_DIR}/scripts/perl/Makefile.PL ${PERL_PREFIX_TEXT} -+ COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc SRC_DIR=${openbabel_SOURCE_DIR} OBJ_DIR=${openbabel_BINARY_DIR} ${PERL_EXECUTABLE} ${openbabel_BINARY_DIR}/scripts/perl/Makefile.PL INSTALLDIRS=vendor ${PERL_PREFIX_TEXT} - COMMAND PERL5LIB=${openbabel_SOURCE_DIR}/scripts/perl/inc make - DEPENDS ${openbabel_SOURCE_DIR}/scripts/perl/openbabel-perl.cpp - WORKING_DIRECTORY ${openbabel_BINARY_DIR}/scripts/perl -diff --git a/scripts/perl/Makefile.PL b/scripts/perl/Makefile.PL -index a3a2116..44ad27d 100644 ---- a/scripts/perl/Makefile.PL -+++ b/scripts/perl/Makefile.PL -@@ -32,5 +32,6 @@ WriteMakefile( - 'CC' => $CC, - 'LD' => '$(CC)', - 'INC' => '-I../../include -I'.$cmakesrcdir.'/include', -+ 'DESTDIR' => @ENV{"D"}, - 'OBJECT' => 'openbabel-perl.o' - ); diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-swig.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-swig.patch deleted file mode 100644 index 6beacf74880c..000000000000 --- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.0-swig.patch +++ /dev/null @@ -1,25 +0,0 @@ - scripts/CMakeLists.txt | 6 +----- - 1 files changed, 1 insertions(+), 5 deletions(-) - -diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt -index bf2527b..16feeb4 100644 ---- a/scripts/CMakeLists.txt -+++ b/scripts/CMakeLists.txt -@@ -8,16 +8,12 @@ if (RUN_SWIG) - # SWIG_EXECUTABLE - the path to the swig executable - # SWIG_VERSION - the version number of the swig executable - -- find_package(SWIG) -+ find_package(SWIG 2.0.0) - if (NOT SWIG_FOUND) - message(STATUS "SWIG NOT found") - return() - endif (NOT SWIG_FOUND) - message(STATUS "SWIG version is ${SWIG_VERSION}") -- if (NOT ${SWIG_VERSION} STREQUAL "2.0.0" AND NOT ${SWIG_VERSION} STREQUAL "2.0.1") -- message(STATUS "SWIG version 2.0.0 exactly is required") -- return() -- endif (NOT ${SWIG_VERSION} STREQUAL "2.0.0" AND NOT ${SWIG_VERSION} STREQUAL "2.0.1") - endif (RUN_SWIG) - - ################### diff --git a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch b/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch deleted file mode 100644 index 88248b4432f1..000000000000 --- a/sci-chemistry/openbabel-perl/files/openbabel-perl-2.3.1-makefile.patch +++ /dev/null @@ -1,9 +0,0 @@ ---- scripts/perl/Makefile.PL -+++ scripts/perl/Makefile.PL -@@ -37,5 +37,6 @@ 'LDFROM' => $ldfrom, - 'CC' => $CC, - 'LD' => '$(CC)', - 'INC' => '-I../../include -I'.$cmakesrcdir.'/include', -+ 'DESTDIR' => @ENV{"D"}, - 'OBJECT' => 'openbabel-perl.o' - ); diff --git a/sci-chemistry/platon/files/20110126-buffer-overflow.patch b/sci-chemistry/platon/files/20110126-buffer-overflow.patch deleted file mode 100644 index 548bd2b20ca4..000000000000 --- a/sci-chemistry/platon/files/20110126-buffer-overflow.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- xdrvr.c 2010-06-27 15:21:49.026967128 +0200 -+++ xdrvr_new.c 2010-06-27 15:22:57.132069867 +0200 -@@ -864,11 +864,9 @@ - int zdate_(string) - char *string; - { -- static char tmp[25]; - time_t now; - now = time(NULL); -- strcpy(tmp,ctime(&now)); -- strncpy(string,tmp,25); -+ strncpy(string,ctime(&now),25); - return(1); - } - int slaap_(int *i) \ No newline at end of file diff --git a/sci-chemistry/pymol/files/pymol-1.7.3.1-maeffplugin.cpp.patch b/sci-chemistry/pymol/files/pymol-1.7.3.1-maeffplugin.cpp.patch deleted file mode 100644 index cd4650bbf4e0..000000000000 --- a/sci-chemistry/pymol/files/pymol-1.7.3.1-maeffplugin.cpp.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- contrib/uiuc/plugins/molfile_plugin/src/maeffplugin_orig.cpp 2014-02-07 19:50:50.132261610 -0800 -+++ contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp 2014-02-07 19:52:12.527797099 -0800 -@@ -1983,7 +1983,7 @@ - } - } - catch (std::exception &e) { -- fprintf(stderr, e.what()); -+ fprintf(stderr, "%s", e.what()); - return MOLFILE_ERROR; - } - return MOLFILE_SUCCESS; diff --git a/sci-chemistry/raster3d/files/2.9.1-as-needed.patch b/sci-chemistry/raster3d/files/2.9.1-as-needed.patch deleted file mode 100644 index 2139804c8962..000000000000 --- a/sci-chemistry/raster3d/files/2.9.1-as-needed.patch +++ /dev/null @@ -1,41 +0,0 @@ -diff --git a/Makefile b/Makefile -index e75ffcf..bcdd05c 100644 ---- a/Makefile -+++ b/Makefile -@@ -188,7 +188,7 @@ avs2ps: avs2ps.c - $(CC) $(CFLAGS) $(FLAGS) $(LDFLAGS) -o avs2ps avs2ps.c -lm - - balls: balls.f -- $(FC) $(FFLAGS) -o balls balls.f -+ $(FC) $(LDFLAGS) $(FFLAGS) -o balls balls.f - - local.o: Makefile.incl local.c - $(CC) $(CFLAGS) $(FLAGS) -c local.c -@@ -201,21 +201,18 @@ ribbon: ribbon.f ribbon1.f modsubs.f - ribbon.f ribbon1.f modsubs.f -o ribbon - - rastep: rastep.f quadric.o suv.o -- $(FC) $(FFLAGS) \ -- rastep.f quadric.o suv.o $(LDFLAGS) \ -- -o rastep -+ $(FC) $(FFLAGS) $(LDFLAGS) -o rastep \ -+ rastep.f quadric.o suv.o - - render: render.o local.o quadric.o parse.o r3dtops.o ungz.o qinp.o -- $(FC) $(FFLAGS) \ -+ $(FC) $(FFLAGS) $(LDFLAGS) -o render \ - render.o local.o quadric.o parse.o r3dtops.o ungz.o \ - qinp.o \ -- $(LIBS) $(LDFLAGS) \ -- -o render -+ $(LIBS) - - normal3d: normal3d.o quadric.o qinp.o ungz.o parameters.incl -- $(FC) $(FFLAGS) \ -- normal3d.o quadric.o ungz.o qinp.o $(LDFLAGS) \ -- -o normal3d -+ $(FC) $(FFLAGS) $(LDFLAGS) -o normal3d \ -+ normal3d.o quadric.o ungz.o qinp.o - - stereo3d: - diff --git a/sci-chemistry/raster3d/files/raster3d-gcc-4.1-gentoo.patch b/sci-chemistry/raster3d/files/raster3d-gcc-4.1-gentoo.patch deleted file mode 100644 index 4525f5fdc8ba..000000000000 --- a/sci-chemistry/raster3d/files/raster3d-gcc-4.1-gentoo.patch +++ /dev/null @@ -1,74 +0,0 @@ -diff -Naur Raster3D_2.7c/normal3d.f Raster3D_2.7c.new/normal3d.f ---- Raster3D_2.7c/normal3d.f 2003-10-20 18:50:11.000000000 -0400 -+++ Raster3D_2.7c.new/normal3d.f 2007-09-08 10:23:08.000000000 -0400 -@@ -443,7 +443,8 @@ - READ (INPUT,'(A)',ERR=101) TITLE - IF (TITLE(1:1).EQ.'#') GOTO 100 - GOTO 102 -- 101 WRITE (NOISE,'(A,A)') ' >> Cannot open or read file ',TITLE(2:132) -+ 101 WRITE (NOISE,'(A,A)') ' >> Cannot open or read file ', -+ * TITLE(2:132) - CALL EXIT(-1) - 102 CONTINUE - ENDIF -diff -Naur Raster3D_2.7c/parse.f Raster3D_2.7c.new/parse.f ---- Raster3D_2.7c/parse.f 2003-10-20 18:50:11.000000000 -0400 -+++ Raster3D_2.7c.new/parse.f 2007-09-08 10:23:48.000000000 -0400 -@@ -4,7 +4,8 @@ - COMMON /OPTIONS/ FONTSCALE, GAMMA, ZOOM, NSCHEME, SHADOWFLAG, XBG, - & NAX, NAY, OTMODE, QUALITY, INVERT, LFLAG - REAL FONTSCALE, GAMMA, ZOOM -- INTEGER NSCHEME, SHADOWFLAG, XBG -+ INTEGER NSCHEME, SHADOWFLAG -+ INTEGER*8 XBG - INTEGER*2 NAX, NAY, OTMODE, QUALITY - LOGICAL*2 INVERT, LFLAG - c -diff -Naur Raster3D_2.7c/rastep.f Raster3D_2.7c.new/rastep.f ---- Raster3D_2.7c/rastep.f 2004-02-12 12:01:31.000000000 -0500 -+++ Raster3D_2.7c.new/rastep.f 2007-09-08 10:23:08.000000000 -0400 -@@ -133,7 +133,7 @@ - c - c Support for validation of similarity of bonded atoms - logical suvflag -- integer suvlun, suvbad -+ integer suvlun, suvbad, defcols - real anisov(6) - c - c Default to CPK colors and VDW radii -diff -Naur Raster3D_2.7c/render.f Raster3D_2.7c.new/render.f ---- Raster3D_2.7c/render.f 2003-10-20 18:50:11.000000000 -0400 -+++ Raster3D_2.7c.new/render.f 2007-09-08 10:23:08.000000000 -0400 -@@ -792,9 +792,9 @@ - * Get background colour - READ (INPUT,*,ERR=104) BKGND - if (XBG.NE.0) then -- BKGND(3) = FLOAT(iand(XBG,'00FF'X)) / 255. -- BKGND(2) = FLOAT(iand(XBG,'FF00'X)/256) / 255. -- BKGND(1) = FLOAT(iand(XBG,'FF0000'X)/65536) / 255. -+ BKGND(3) = REAL(iand(XBG,'00FF'X)) / 255. -+ BKGND(2) = REAL(iand(XBG,'FF00'X)/256) / 255. -+ BKGND(1) = REAL(iand(XBG,'FF0000'X)/65536) / 255. - BKGND(3) = BKGND(3)**2 - BKGND(2) = BKGND(2)**2 - BKGND(1) = BKGND(1)**2 -@@ -3679,7 +3679,7 @@ - FRAC = DETAIL(K+8) - INEXT = INDTOP + 1 - IF (TYPE(INEXT).EQ.VERTEXRGB) INEXT = INEXT + 1 -- CALL ASSERT(TYPE(INEXT).EQ.VERTRANSP,'lost vertex transp') -+ CALL ASSERT(TYPE(INEXT).EQ.VERTRANSP,'lost vertex transp') - K = LIST(INEXT) - CLRITY = FRAC*DETAIL(K+1) + (1.-FRAC)*DETAIL(K+2) - ELSE IF (TYPE(INDTOP).EQ.TRIANG) THEN -diff -Naur Raster3D_2.7c/rings3d.f Raster3D_2.7c.new/rings3d.f ---- Raster3D_2.7c/rings3d.f 2003-10-20 18:50:11.000000000 -0400 -+++ Raster3D_2.7c.new/rings3d.f 2007-09-08 10:23:08.000000000 -0400 -@@ -16,7 +16,6 @@ - integer input, output, noise - parameter (input=5, output=6, noise=0) - integer iargc, narg -- external iargc - character*64 options - logical bflag, pflag, sflag - c diff --git a/sci-chemistry/shelx/files/20060317-autotool.patch b/sci-chemistry/shelx/files/20060317-autotool.patch deleted file mode 100644 index b90fb0a921c1..000000000000 --- a/sci-chemistry/shelx/files/20060317-autotool.patch +++ /dev/null @@ -1,47 +0,0 @@ -diff -urN unix.orig/configure.ac unix/configure.ac ---- unix.orig/configure.ac 1969-12-31 16:00:00.000000000 -0800 -+++ unix/configure.ac 2006-06-04 22:31:49.000000000 -0700 -@@ -0,0 +1,12 @@ -+# -*- Autoconf -*- -+# Process this file with autoconf to produce a configure script. -+ -+AC_PREREQ(2.59) -+AC_INIT(shelx, 20060317, https://bugs.gentoo.org/) -+AC_CONFIG_SRCDIR([ciftab.f]) -+AM_INIT_AUTOMAKE([foreign]) -+ -+# Checks for programs. -+AC_PROG_FC -+AC_PROG_F77 -+AC_OUTPUT([Makefile]) -diff -urN unix.orig/Makefile.am unix/Makefile.am ---- unix.orig/Makefile.am 1969-12-31 16:00:00.000000000 -0800 -+++ unix/Makefile.am 2006-06-04 23:06:39.000000000 -0700 -@@ -0,0 +1,27 @@ -+bin_PROGRAMS = \ -+ ciftab \ -+ shelxa \ -+ shelxc \ -+ shelxd \ -+ shelxe \ -+ shelxh \ -+ shelxl \ -+ shelxpro \ -+ shelxs \ -+ shelxwat -+ -+dist_pkgdata_DATA = \ -+ ciftab.def \ -+ ciftab.rta \ -+ ciftab.rtm -+ -+ciftab_SOURCES = ciftab.f -+shelxa_SOURCES = shelxa.f -+shelxc_SOURCES = shelxc.f -+shelxd_SOURCES = shelxd.f -+shelxe_SOURCES = shelxe.f -+shelxh_SOURCES = shelxh.f shelxlv.f -+shelxl_SOURCES = shelxl.f shelxlv.f -+shelxpro_SOURCES = shelxpro.f -+shelxs_SOURCES = shelxs.f shelxsv.f -+shelxwat_SOURCES = shelxwat.f diff --git a/sci-chemistry/shelx/files/20060317-gfortran.patch b/sci-chemistry/shelx/files/20060317-gfortran.patch deleted file mode 100644 index d414a8e45c31..000000000000 --- a/sci-chemistry/shelx/files/20060317-gfortran.patch +++ /dev/null @@ -1,20 +0,0 @@ ---- unix.orig/ciftab.f 2006-10-12 11:44:46.000000000 -0700 -+++ unix/ciftab.f 2006-10-12 11:38:22.000000000 -0700 -@@ -377,7 +377,7 @@ - C systems. It enables a 'read-only' file to be opened for reading. - C - OPEN(LR,FILE=CIFDIR(1:K)//'ciftab.'//IS(1:L),STATUS='OLD', -- +READONLY,ERR=5) -+ +ERR=5) - GOTO 6 - 4 WRITE(*,'(/A)')' ** Cannot open file **' - GOTO 108 -@@ -1332,7 +1332,7 @@ - 6 FORMAT(3X,4('h k l Fo Fc s',5X),'h k l Fo Fc s', - +A1/A1) - 7 FORMAT(4(I4,2I3,2I5,I4,2X),I4,2I3,2I5,I4) -- 8 FORMAT($,1X,A) -+ 8 FORMAT(1X,A,$) - C - WRITE(LO,1)' '//ESC//AMP//'l0o5c1x'//ESC//'(0u'// - +ESC//'(s0p16.66h8.5v0s0b0T'//CR diff --git a/sci-chemistry/sparky/files/3.115-fpic.patch b/sci-chemistry/sparky/files/3.115-fpic.patch deleted file mode 100644 index 37725aa029e2..000000000000 --- a/sci-chemistry/sparky/files/3.115-fpic.patch +++ /dev/null @@ -1,42 +0,0 @@ -diff --git a/c++/Makefile b/c++/Makefile -index 421ff77..7442ed3 100644 ---- a/c++/Makefile -+++ b/c++/Makefile -@@ -158,7 +158,7 @@ winsystem-$(PLATFORM).o: winsystem-$(PLATFORM).cc - $(CXX) $(CXXFLAGS) $(TKFLAGS) -c $(SPARKY_SRC)/winsystem-$(PLATFORM).cc - - python.o: python.cc -- $(CXX) $(CXXFLAGS) $(PYFLAGS) $(TKFLAGS) -c $(SPARKY_SRC)/python.cc -+ $(CXX) $(CXXFLAGS) -fPIC $(PYFLAGS) $(TKFLAGS) -c $(SPARKY_SRC)/python.cc - - _tkinter.so: _tkinter.o - $(CXX) $(LDSHARED) $(LDFLAGS) -o $@ _tkinter.o $(TKLIBS) -diff --git a/c++/Makefile b/c++/Makefile -index 353122d..84b0c24 100644 ---- a/c++/Makefile -+++ b/c++/Makefile -@@ -168,7 +168,7 @@ _tkinter.o: _tkinter.c - - Makefile.dep: force - cd $(SPARKY_SRC) ; \ -- $(CXX) $(DEPEND) $(CXXFLAGS) $(TKFLAGS) $(PYFLAGS) \ -+ $(CXX) $(DEPEND) $(CXXFLAGS) -fPIC $(TKFLAGS) $(PYFLAGS) \ - $(SPARKY_OBJS:.o=.cc) $(OTHER_OBJS:.o=.cc) > $@ - - TAGS: force -diff --git a/c++/Makefile b/c++/Makefile -index 84b0c24..933f347 100644 ---- a/c++/Makefile -+++ b/c++/Makefile -@@ -30,9 +30,9 @@ TCL_LIBNAME = tcl$(TCLTK_VERSION) - PLATFORM = unix - - CXX = g++ --CXXFLAGS = -+CXXFLAGS += -fPIC - CC = gcc --CFLAGS = -+CFLAGS += -fPIC - PYFLAGS = -I$(PYTHON_INC) -I$(PYTHON_LIB)/config - TKFLAGS = -I$(TK_PREFIX)/include - TKLIBS = -L$(TK_PREFIX)/lib -l$(TK_LIBNAME) -l$(TCL_LIBNAME) -lX11 diff --git a/sci-chemistry/sparky/files/3.115-wrapper.patch b/sci-chemistry/sparky/files/3.115-wrapper.patch deleted file mode 100644 index 9498c0bec837..000000000000 --- a/sci-chemistry/sparky/files/3.115-wrapper.patch +++ /dev/null @@ -1,41 +0,0 @@ -diff --git a/bin/sparky b/bin/sparky -index 8b51212..270723a 100644 ---- a/bin/sparky -+++ b/bin/sparky -@@ -4,18 +4,6 @@ - # - - # ----------------------------------------------------------------------------- --# Figure out Sparky installation directory from $0. --# --set sparky_exe = "$0" --while (-l "$sparky_exe") -- set ls_sparky_exe = `ls -l "$sparky_exe"` -- set sparky_exe = `echo "$ls_sparky_exe" | sed 's/.* -> //'` --end --set sparky_bin = `dirname "$sparky_exe"` --set sparky_bin = `cd "$sparky_bin"; pwd` --set sparky_inst = `dirname "$sparky_bin"` -- --# ----------------------------------------------------------------------------- - # Sparky uses the SPARKY_INSTALL environment variable to find its - # application resource file and print prolog file. - # -@@ -25,7 +13,7 @@ setenv SPARKY_INSTALL "$sparky_inst" - # If Python is available start Sparky as a Python extension. - # Otherwise the standalone version of Sparky is started. - # --set PYTHON = "$SPARKY_INSTALL/python2.5/bin/python2.5" -+set PYTHON = "@GENTOO_PORTAGE_EPREFIX@/usr/bin/python" - if (! -e "$PYTHON") then - set PYTHON = python2.5 - endif -@@ -79,7 +67,7 @@ if ($status == 0) then - # --------------------------------------------------------------------------- - # Add the Sparky package and Tkinter to the Python path - # -- set SPARKY_PYTHONPATH = "$SPARKY_INSTALL/python:$SPARKY_INSTALL/python/lib-tk" -+ set SPARKY_PYTHONPATH = "$SPARKY_INSTALL/python:$SPARKY_INSTALL/python/sparky" - if ($?PYTHONPATH) then - setenv PYTHONPATH "${SPARKY_PYTHONPATH}:$PYTHONPATH" - else diff --git a/sci-chemistry/sparky/files/fix-install.patch b/sci-chemistry/sparky/files/fix-install.patch deleted file mode 100644 index 4eefaa891f99..000000000000 --- a/sci-chemistry/sparky/files/fix-install.patch +++ /dev/null @@ -1,259 +0,0 @@ -diff -ur -x make-sparky sparky.orig/bin/sparky sparky/bin/sparky ---- sparky.orig/bin/sparky 2004-03-05 11:32:10.000000000 -0800 -+++ sparky/bin/sparky 2005-12-17 17:36:51.000000000 -0800 -@@ -4,22 +4,10 @@ - # - - # ----------------------------------------------------------------------------- --# Figure out Sparky installation directory from $0. --# --set sparky_exe = $0 --while (-l $sparky_exe) -- set ls_sparky_exe = `ls -l "$sparky_exe"` -- set sparky_exe = `echo "$ls_sparky_exe" | sed 's/.* -> //'` --end --set sparky_bin = `dirname "$sparky_exe"` --set sparky_bin = `cd "$sparky_bin"; pwd` --set sparky_inst = `dirname "$sparky_bin"` -- --# ----------------------------------------------------------------------------- - # Sparky uses the SPARKY_INSTALL environment variable to find its - # application resource file and print prolog file. - # --setenv SPARKY_INSTALL $sparky_inst -+setenv SPARKY_INSTALL @GENTOO_PORTAGE_EPREFIX@/usr/lib/sparky - - # ----------------------------------------------------------------------------- - # If Python is available start Sparky as a Python extension. -diff -ur -x make-sparky sparky.orig/c++/Makefile sparky/c++/Makefile ---- sparky.orig/c++/Makefile 2004-02-03 15:56:24.000000000 -0800 -+++ sparky/c++/Makefile 2005-12-18 10:49:08.000000000 -0800 -@@ -22,6 +22,7 @@ - PYTHON_PREFIX = /usr/local - PYTHON_LIB = $(PYTHON_PREFIX)/lib/python$(PYTHON_VERSION) - PYTHON_INC = $(PYTHON_PREFIX)/include/python$(PYTHON_VERSION) -+PYDIR = $(SPARKY_INSTALL)/lib/python$(PYTHON_VERSION)/site-packages - TCLTK_VERSION = 8.4 - TCLTK_VER_WIN32 = 84 - TK_PREFIX = /usr/local -@@ -113,21 +114,20 @@ - - nopython: $(EXECUTABLES) - --install-python: $(SPY_PYMOD) $(TKINTER_PYMOD) $(SPARKY_INSTALL)/python \ -- $(SPARKY_INSTALL)/python/sparky $(SPARKY_INSTALL)/python/lib-tk -- $(INSTALL) $(SPY_PYMOD) $(SPARKY_INSTALL)/python/sparky -- chmod 755 $(SPARKY_INSTALL)/python/sparky/$(SPY_PYMOD) -- $(INSTALL) $(TKINTER_PYMOD) $(SPARKY_INSTALL)/python/lib-tk -- chmod 755 $(SPARKY_INSTALL)/python/lib-tk/$(TKINTER_PYMOD) -+install-python: $(SPY_PYMOD) $(TKINTER_PYMOD) $(PYDIR) \ -+ $(PYDIR)/sparky $(PYDIR)/lib-tk -+ $(INSTALL) $(SPY_PYMOD) $(PYDIR)/sparky -+ chmod 755 $(PYDIR)/sparky/$(SPY_PYMOD) -+ $(INSTALL) $(TKINTER_PYMOD) $(PYDIR)/lib-tk -+ chmod 755 $(PYDIR)/lib-tk/$(TKINTER_PYMOD) - - install-nopython: $(EXECUTABLES) $(SPARKY_INSTALL)/bin - $(INSTALL) $(EXECUTABLES) $(SPARKY_INSTALL)/bin - cd $(SPARKY_INSTALL)/bin ; \ - chmod 755 $(EXECUTABLES) - --$(SPARKY_INSTALL)/bin $(SPARKY_INSTALL)/python \ --$(SPARKY_INSTALL)/python/sparky $(SPARKY_INSTALL)/python/lib-tk: -- mkdir $@ -+$(SPARKY_INSTALL)/bin $(PYDIR) $(PYDIR)/sparky $(PYDIR)/lib-tk: -+ mkdir -p $@ - chmod 755 $@ - - sparky-no-python$(EXE_SUFFIX): main.o $(SPARKY_OBJS) -diff -ur -x make-sparky sparky.orig/c++/paths.h sparky/c++/paths.h ---- sparky.orig/c++/paths.h 2002-01-17 19:15:06.000000000 -0800 -+++ sparky/c++/paths.h 2005-12-17 20:57:15.000000000 -0800 -@@ -19,7 +19,7 @@ - // Installation subdirectories and files - // - #define SPARKY_MANUAL "manual" --#define SPARKY_LIB "lib" -+#define SPARKY_LIB "" - #define SPARKY_PRINT "print-prolog.ps" // under lib directory - #define SPARKY_RESOURCE "Sparky" // under lib directory - #define SPARKY_SAMPLE_DATA "example" -diff -ur -x make-sparky sparky.orig/c++/system-unix.cc sparky/c++/system-unix.cc ---- sparky.orig/c++/system-unix.cc 2004-02-26 10:57:54.000000000 -0800 -+++ sparky/c++/system-unix.cc 2005-12-17 20:56:58.000000000 -0800 -@@ -95,7 +95,7 @@ - // - Stringy default_sparky_install_path() - { -- return file_path(file_path(file_path("", "usr"), "local"), "sparky"); -+ return file_path(file_path(file_path("", "usr"), "lib"), "sparky"); - } - - // ---------------------------------------------------------------------------- -diff -ur -x make-sparky sparky.orig/lib/Makefile sparky/lib/Makefile ---- sparky.orig/lib/Makefile 2004-02-18 10:53:29.000000000 -0800 -+++ sparky/lib/Makefile 2005-12-17 16:03:21.000000000 -0800 -@@ -18,9 +18,9 @@ - TCL_SHLIB = lib$(TCL_VERSION)$(TCLTK_SHLIB_SUFFIX) - TK_SHLIB = lib$(TK_VERSION)$(TCLTK_SHLIB_SUFFIX) - --install: $(SPARKY_INSTALL)/lib install-tcl-tk -- $(INSTALL) Sparky print-prolog.ps $(SPARKY_INSTALL)/lib -- cd $(SPARKY_INSTALL)/lib ; \ -+install: $(SPARKY_INSTALL)/lib -+ $(INSTALL) Sparky print-prolog.ps $(SPARKY_INSTALL)/lib/sparky -+ cd $(SPARKY_INSTALL)/lib/sparky ; \ - chmod 644 Sparky print-prolog.ps - - install-tcl-tk: $(SPARKY_INSTALL)/lib -diff -ur -x make-sparky sparky.orig/Makefile sparky/Makefile ---- sparky.orig/Makefile 2004-02-18 10:40:04.000000000 -0800 -+++ sparky/Makefile 2005-12-17 19:40:48.000000000 -0800 -@@ -40,18 +40,22 @@ - - PYTHON_VERSION = 2.3 - PYTHON_DIR = -+PYDIR = $(SPARKY_INSTALL)/lib/python$(PYTHON_VERSION)/site-packages - - PYMOD_SUFFIX = .so - SPY_PYMOD = spy$(PYMOD_SUFFIX) - TKINTER_PYMOD = _tkinter$(PYMOD_SUFFIX) - -+PYDIR = $(SPARKY_INSTALL)/lib/sparky/python -+DOCDIR = $(SPARKY_INSTALL)/share/doc/sparky -+ - all nopython $(SPY_PYMOD) $(TKINTER_PYMOD) $(EXECUTABLES) debug-sparky clean: force - cd $(SPARKY_OBJ) && $(MAKE) -f $(SPARKY_SRC)/Makefile -e $@ - - Makefile.dep TAGS: force - cd $(SPARKY_SRC) && $(MAKE) -f Makefile -e $@ - --install: install-nopython $(SPARKY_INSTALL) install-python -+install: install-nopython $(SPARKY_INSTALL) - cd $(SPARKY_OBJ) && \ - $(MAKE) -f $(SPARKY_SRC)/Makefile -e install-python - cd $(SPARKY)/python && $(MAKE) -f Makefile -e install -@@ -67,7 +71,8 @@ - chmod 755 sparky$(SCRIPT_SUFFIX) - - install-example: $(SPARKY_INSTALL) -- cd $(SPARKY) ; $(INSTALLDIR) example $(SPARKY_INSTALL) -+ mkdir -p $(DOCDIR)/example -+ cd $(SPARKY) ; $(INSTALLDIR) example $(DOCDIR) - - install-lib: $(SPARKY_INSTALL) - cd $(SPARKY)/lib && $(MAKE) -f Makefile -e install -@@ -76,21 +81,14 @@ - cd $(SPARKY)/manual && $(MAKE) -f Makefile -e install - - install-misc: $(SPARKY_INSTALL) -- cd $(SPARKY) ; $(INSTALL) LICENSE README $(SPARKY_INSTALL) -- cd $(SPARKY_INSTALL) ; chmod 644 LICENSE README -- --install-python: $(SPARKY_INSTALL) $(SPARKY_INSTALL)/python$(PYTHON_VERSION) --ifdef PYTHON_DIR -- $(INSTALLDIR) $(PYTHON_DIR)/* $(SPARKY_INSTALL)/python$(PYTHON_VERSION) --else -- echo "Not packaging Python with Sparky." --endif -+ cd $(SPARKY) ; $(INSTALL) LICENSE README $(DOCDIR) -+ cd $(DOCDIR) ; chmod 644 LICENSE README - - install-mac: - cd $(SPARKY)/mac && $(MAKE) -f Makefile -e install - --$(SPARKY_INSTALL) $(SPARKY_INSTALL)/bin $(SPARKY_INSTALL)/python$(PYTHON_VERSION): -- mkdir $@ -+$(SPARKY_INSTALL) $(SPARKY_INSTALL)/bin $(PYDIR): -+ mkdir -p $@ - chmod 755 $@ - - force: -diff -ur -x make-sparky sparky.orig/manual/Makefile sparky/manual/Makefile ---- sparky.orig/manual/Makefile 2004-03-08 15:40:06.000000000 -0800 -+++ sparky/manual/Makefile 2005-12-17 19:37:45.000000000 -0800 -@@ -13,6 +13,8 @@ - - SPARKY_INSTALL = /usr/local/sparky - MANUAL_WWW = /usr/local/html/cgl/sparky/manual -+DOCDIR = $(SPARKY_INSTALL)/share/doc/sparky -+MANUAL_LOC = $(DOCDIR)/manual - - MANUAL_SECTIONS = overview.html intro.html views.html peaks.html \ - extensions.html autoassign.html misc.html \ -@@ -45,17 +47,17 @@ - - all: $(MANUAL_FILES) - --install: $(MANUAL_FILES) $(SPARKY_INSTALL)/manual \ -- $(SPARKY_INSTALL)/manual/images -- $(INSTALL) $(MANUAL_FILES) $(SPARKY_INSTALL)/manual -- cd $(SPARKY_INSTALL)/manual ; \ -+install: $(MANUAL_FILES) $(MANUAL_LOC) \ -+ $(MANUAL_LOC)/images -+ $(INSTALL) $(MANUAL_FILES) $(MANUAL_LOC) -+ cd $(MANUAL_LOC) ; \ - chmod 644 $(MANUAL_FILES) - cd images ; \ -- $(INSTALL) $(IMAGE_FILES) $(SPARKY_INSTALL)/manual/images -- cd $(SPARKY_INSTALL)/manual/images ; \ -+ $(INSTALL) $(IMAGE_FILES) $(MANUAL_LOC)/images -+ cd $(MANUAL_LOC)/images ; \ - chmod 644 $(IMAGE_FILES) - --$(SPARKY_INSTALL)/manual $(SPARKY_INSTALL)/manual/images: -+$(MANUAL_LOC) $(MANUAL_LOC)/images: - mkdir $@ - chmod 755 $@ - -Only in sparky/manual: manual-postscript.gz -diff -ur -x make-sparky sparky.orig/python/Makefile sparky/python/Makefile ---- sparky.orig/python/Makefile 2004-02-18 10:51:06.000000000 -0800 -+++ sparky/python/Makefile 2005-12-17 19:43:06.000000000 -0800 -@@ -9,6 +9,8 @@ - PYTHON_VERSION = 2.3 - PYTHON = $(PYTHON_PREFIX)/bin/python$(PYTHON_VERSION) - PYTHON_LIB = $(PYTHON_PREFIX)/lib/python$(PYTHON_VERSION) -+PYDIR = $(SPARKY_INSTALL)/lib/python$(PYTHON_VERSION)/site-packages -+DOCDIR = $(SPARKY_INSTALL)/share/doc/sparky - - PYTHON_CODE = __init__.py align.py assigngraph.py atomnames.py \ - atoms.py autoassign.py axes.py \ -@@ -27,18 +29,13 @@ - sputil.py start_in_chimera.py strips.py subprocess.py \ - tkutil.py volumeerror.py xeasy.py xplor.py - --install: $(SPARKY_INSTALL)/python $(SPARKY_INSTALL)/python/sparky \ -- $(SPARKY_INSTALL)/python/lib-tk -- $(INSTALL) README $(SPARKY_INSTALL)/python -- $(INSTALL) $(PYTHON_CODE) $(SPARKY_INSTALL)/python/sparky -- $(INSTALL) lib-tk/*.py $(SPARKY_INSTALL)/python/lib-tk -- chmod 644 $(SPARKY_INSTALL)/python/README -- cd $(SPARKY_INSTALL)/python/sparky ; chmod 644 $(PYTHON_CODE) -- chmod 644 $(SPARKY_INSTALL)/python/lib-tk/*.py -- $(PYTHON) $(PYTHON_LIB)/compileall.py $(SPARKY_INSTALL)/python/sparky -- $(PYTHON) $(PYTHON_LIB)/compileall.py $(SPARKY_INSTALL)/python/lib-tk -+install: $(PYDIR) $(PYDIR)/sparky $(DOCDIR)/python -+ $(INSTALL) README $(DOCDIR)/python -+ $(INSTALL) $(PYTHON_CODE) $(PYDIR)/sparky -+ chmod 644 $(DOCDIR)/python/README -+ cd $(PYDIR)/sparky ; chmod 644 $(PYTHON_CODE) - --$(SPARKY_INSTALL)/python $(SPARKY_INSTALL)/python/sparky \ -- $(SPARKY_INSTALL)/python/lib-tk: -+$(PYDIR) $(PYDIR)/sparky \ -+ $(PYDIR)/lib-tk $(DOCDIR)/python: - mkdir $@ - chmod 755 $@ -diff -ur -x make-sparky sparky.orig/python/spingraph.py sparky/python/spingraph.py ---- sparky.orig/python/spingraph.py 2001-12-17 10:51:10.000000000 -0800 -+++ sparky/python/spingraph.py 2005-12-17 22:09:17.000000000 -0800 -@@ -831,7 +831,7 @@ - 'by creating a file specifying atom positions, colors,\n' + - 'sizes, and text label positions. Sparky provides a\n' + - 'default layout file\n' + -- '\n\t/usr/local/sparky/python/spinlayout.py\n\n' + -+ '\n\t/usr/lib/python*/site-packages/sparky/python/spinlayout.py\n\n' + - 'You override this file by making your own copy\n' + - '\n\t~/Sparky/Python/spinlayout.py\n\n' + - 'You can create the desired template on the screen\n' diff --git a/sci-chemistry/tinker/files/5.1.09-Makefile.patch b/sci-chemistry/tinker/files/5.1.09-Makefile.patch deleted file mode 100644 index 68a095add706..000000000000 --- a/sci-chemistry/tinker/files/5.1.09-Makefile.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/make/Makefile b/make/Makefile -index 221ab45..7634474 100644 ---- a/make/Makefile -+++ b/make/Makefile -@@ -607,7 +607,7 @@ clean: - listing: - cat *.i *.f > tinker.txt - --rename: -+rename: ${EXEFILES} - mv alchemy.x $(BINDIR)/alchemy - mv analyze.x $(BINDIR)/analyze - mv anneal.x $(BINDIR)/anneal diff --git a/sci-chemistry/tinker/files/6-openmp.patch b/sci-chemistry/tinker/files/6-openmp.patch deleted file mode 100644 index 3666fbd0bfc4..000000000000 --- a/sci-chemistry/tinker/files/6-openmp.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --git a/source/initial.f b/source/initial.f -index 835f228..4099c74 100644 ---- a/source/initial.f -+++ b/source/initial.f -@@ -73,8 +73,8 @@ c - c - c Intel compiler extensions to OpenMP standard - c --!$ call kmp_set_stacksize (2**30) --!$ call kmp_set_blocktime (0) -+! call kmp_set_stacksize (2**30) -+! call kmp_set_blocktime (0) - c - c values of machine precision constants - c diff --git a/sci-chemistry/viewmol/files/2.4.1-change-default-path-to-usr.patch b/sci-chemistry/viewmol/files/2.4.1-change-default-path-to-usr.patch deleted file mode 100644 index e5e22ffee893..000000000000 --- a/sci-chemistry/viewmol/files/2.4.1-change-default-path-to-usr.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- viewmol-2.4.1.orig/source/getrc.c 2004-10-20 05:54:35.000000000 -0700 -+++ viewmol-2.4.1/source/getrc.c 2005-12-02 11:38:32.000000000 -0800 -@@ -87,7 +87,7 @@ - - static char viewmolpath[MAXLENLINE]; - --#define DEFAULTPATH "/usr/local/lib/viewmol" -+#define DEFAULTPATH "/usr/lib/viewmol" - - int getrc(void) - { diff --git a/sci-chemistry/viewmol/files/2.4.1-look-for-python-in-right-place.patch b/sci-chemistry/viewmol/files/2.4.1-look-for-python-in-right-place.patch deleted file mode 100644 index 4f981a0fd1cb..000000000000 --- a/sci-chemistry/viewmol/files/2.4.1-look-for-python-in-right-place.patch +++ /dev/null @@ -1,20 +0,0 @@ ---- viewmol-2.4.1.orig/source/getmachine 2004-08-29 08:04:09.000000000 -0700 -+++ viewmol-2.4.1/source/getmachine 2005-12-02 11:19:36.000000000 -0800 -@@ -156,7 +158,7 @@ - echo "PNGINCLUDE = $pnginclude" >> .config.$os - - # Python -- list=`find /usr -name Python.h -print 2> /dev/null` -+ list=`find /usr/include -name Python.h -print 2> /dev/null` - version=`(for i in $list - do - dir=\`dirname $i\` -@@ -179,7 +181,7 @@ - echo "PYTHONINCLUDE = $pythoninclude" >> .config.$os - if [ "$version" != "" ] - then -- pythonlib=`dirname \`find /usr -name "lib${version}*.a" -print 2> /dev/null | grep "$version/"\`` -+ pythonlib=`dirname \`find /usr/lib -name "lib${version}*.a" -print 2> /dev/null | grep "$version/"\`` - else - givehint - echo -n "Please enter the name of the directory where the Python library can be found: " diff --git a/sci-chemistry/viewmol/files/2.4.1-use-root-for-app-defaults.patch b/sci-chemistry/viewmol/files/2.4.1-use-root-for-app-defaults.patch deleted file mode 100644 index c04da305c144..000000000000 --- a/sci-chemistry/viewmol/files/2.4.1-use-root-for-app-defaults.patch +++ /dev/null @@ -1,20 +0,0 @@ ---- viewmol-2.4.1.orig/source/install 2004-10-09 08:38:31.000000000 -0700 -+++ viewmol-2.4.1/source/install 2005-12-02 11:34:35.000000000 -0800 -@@ -71,7 +71,7 @@ - find $ROOT/lib/viewmol -type d -exec chmod a+rx {} \; - sed 's/\/source//g' viewmolrc > $ROOT/lib/viewmol/viewmolrc - chmod -R 644 $ROOT/lib/viewmol/viewmolrc --if [ -d /usr/X11R6/lib/X11/app-defaults ] -+if [ -d $ROOT/X11R6/lib/X11/app-defaults ] - then - locale=`echo $LANG | cut -c1-2` - if [ "$locale" = "en" ] -@@ -82,6 +82,6 @@ - # The C locale is defined by default for rpm builds, overwrite it - locale="en_US" - fi -- cp locale/${locale}/Viewmol /usr/X11R6/lib/X11/app-defaults -- chmod a+r /usr/X11R6/lib/X11/app-defaults/Viewmol -+ cp locale/${locale}/Viewmol $ROOT/X11R6/lib/X11/app-defaults -+ chmod a+r $ROOT/X11R6/lib/X11/app-defaults/Viewmol - fi diff --git a/sci-chemistry/vmd/files/vmd-1.9.1-tcl8.6.patch b/sci-chemistry/vmd/files/vmd-1.9.1-tcl8.6.patch deleted file mode 100644 index 0c3e45dd39c3..000000000000 --- a/sci-chemistry/vmd/files/vmd-1.9.1-tcl8.6.patch +++ /dev/null @@ -1,25 +0,0 @@ - plugins/molfile_plugin/src/webpdbplugin.c | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/plugins/molfile_plugin/src/webpdbplugin.c b/plugins/molfile_plugin/src/webpdbplugin.c -index 80b3bb9..78597f5 100644 ---- a/plugins/molfile_plugin/src/webpdbplugin.c -+++ b/plugins/molfile_plugin/src/webpdbplugin.c -@@ -202,7 +202,7 @@ static void *open_file_read(const char *filename, const char *filetype, - sprintf(url, "http://www.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId=%s",filename); - sprintf(cmd, "set token [::http::geturl \"%s\"]", url); - if (Tcl_Eval(interp, cmd) != TCL_OK) { -- fprintf(stderr, "Error loading PDB: %s\n",interp->result); -+ fprintf(stderr, "Error loading PDB: %s\n",Tcl_GetStringResult(interp)); - Tcl_DeleteInterp(interp); - return NULL; - } -@@ -211,7 +211,7 @@ static void *open_file_read(const char *filename, const char *filetype, - - result = Tcl_GetVar2(interp, (char *)"state", "body", TCL_GLOBAL_ONLY); - if (!result) { -- fprintf(stderr, "Error loading PDB: %s\n", interp->result); -+ fprintf(stderr, "Error loading PDB: %s\n", Tcl_GetStringResult(interp)); - Tcl_DeleteInterp(interp); - return NULL; - } diff --git a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.4.2-glew.patch b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.4.2-glew.patch deleted file mode 100644 index 08986db5bff2..000000000000 --- a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.4.2-glew.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -urN wxmacmolplt-7.4.2.orig/configure.ac wxmacmolplt-7.4.2/configure.ac ---- wxmacmolplt-7.4.2.orig/configure.ac 2010-12-05 02:48:29.000000000 +0300 -+++ wxmacmolplt-7.4.2/configure.ac 2010-12-06 19:30:24.000000000 +0300 -@@ -20,7 +20,7 @@ - ;; - *) - HOST=LINUX -- LIBGL="-lGL -lGLU" -+ LIBGL=`pkg-config --libs glu glew` - ;; - esac - AM_CONDITIONAL(HOST_IS_MSW, [test "x$HOST" == xMSW]) diff --git a/sci-libs/clipper/files/2.1_p100511-makefile.patch b/sci-libs/clipper/files/2.1_p100511-makefile.patch deleted file mode 100644 index d933e88f7c7e..000000000000 --- a/sci-libs/clipper/files/2.1_p100511-makefile.patch +++ /dev/null @@ -1,23 +0,0 @@ - Makefile.am | 6 +++--- - 1 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/Makefile.am b/Makefile.am -index 745824d..0da0ddd 100644 ---- a/Makefile.am -+++ b/Makefile.am -@@ -1,12 +1,12 @@ - # -*- mode: Makefile; mode: font-lock -*- - AUTOMAKE_OPTIONS = foreign --SUBDIRS = config clipper examples dox --DIST_SUBDIRS = config clipper examples dox -+SUBDIRS = config clipper dox -+DIST_SUBDIRS = config clipper dox - EXTRA_DIST = AUTHORS COPYING ChangeLog INSTALL NEWS README - bin_SCRIPTS = clipper-config - # pkgconfigdir = $(libdir)/pkgconfig - # pkgconfig_DATA = clipper.pc - if DEBUG --AM_CXXFLAGS = -g -DDEBUG -+AM_CXXFLAGS = -DDEBUG - endif - ACLOCAL_AMFLAGS = -I config diff --git a/sci-libs/clipper/files/20091215-missing-var.patch b/sci-libs/clipper/files/20091215-missing-var.patch deleted file mode 100644 index 9ba4b007e9d0..000000000000 --- a/sci-libs/clipper/files/20091215-missing-var.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/clipper-config.in b/clipper-config.in -index df0b77b..3ae536e 100644 ---- a/clipper-config.in -+++ b/clipper-config.in -@@ -84,7 +84,7 @@ fi - - if test "$echo_libs" = "yes" ; then - # note BOOST_LIBS should be part of CCTBX_LIBS -- libs="-lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-cif -lclipper-contrib -lclipper-ccp4 -lclipper-phs -lclipper-core @CCP4_LIBS@ @MMDB_LIBS@ @FFTW_LIBS@ @CCTBX_LIBS@" -+ libs="-lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-cif -lclipper-contrib -lclipper-ccp4 -lclipper-phs -lclipper-core @CCP4_LIBS@ @MMDB_LIBS@ @FFTW_LIBS@" - if test "${libdir}" != "/usr/lib" ; then - echo -L${libdir} $libs - else diff --git a/sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch b/sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch deleted file mode 100644 index 2db566b7b799..000000000000 --- a/sci-libs/clipper/files/clipper-2.1_p100511-outofsourcebuild.patch +++ /dev/null @@ -1,16 +0,0 @@ - examples/Makefile.am | 2 +- - 1 files changed, 1 insertions(+), 1 deletions(-) - -diff --git a/examples/Makefile.am b/examples/Makefile.am -index 203ce96..2b65f1c 100644 ---- a/examples/Makefile.am -+++ b/examples/Makefile.am -@@ -27,7 +27,7 @@ maketestdata_SOURCES = maketestdata.cpp - - TESTS = maketestdata - --INCLUDES = -I.. $(FFTW_CXXFLAGS) $(MMDB_CXXFLAGS) $(CCP4_CXXFLAGS) $(CCTBX_CXXFLAGS) $(BOOST_CXXFLAGS) -+INCLUDES = -I$(top_srcdir) $(FFTW_CXXFLAGS) $(MMDB_CXXFLAGS) $(CCP4_CXXFLAGS) $(CCTBX_CXXFLAGS) $(BOOST_CXXFLAGS) - - LIBS = $(FFTW_LIBS) $(CCP4_LIBS) $(MMDB_LIBS) $(CCTBX_LIBS) - diff --git a/sci-libs/libghemical/files/libghemical-2.98-gcc43.patch b/sci-libs/libghemical/files/libghemical-2.98-gcc43.patch deleted file mode 100644 index d92d31d93b74..000000000000 --- a/sci-libs/libghemical/files/libghemical-2.98-gcc43.patch +++ /dev/null @@ -1,43 +0,0 @@ ---- src/atom.h.orig 2008-06-09 03:59:34.262567972 -0500 -+++ src/atom.h 2008-06-09 04:00:07.136698792 -0500 -@@ -10,6 +10,8 @@ - #ifndef ATOM_H - #define ATOM_H - -+#include -+#include - #include "libghemicaldefine.h" - #include "libghemicalconfig2.h" - ---- src/notice.h.orig 2008-06-09 04:00:24.472509840 -0500 -+++ src/notice.h 2008-06-09 04:00:44.608265748 -0500 -@@ -10,6 +10,7 @@ - #ifndef NOTICE_H - #define NOTICE_H - -+#include - #include "libghemicaldefine.h" - #include "libghemicalconfig2.h" - ---- src/sasaeval.cpp 2008-08-01 09:39:01.000000000 +0530 -+++ src/sasaeval.cpp 2008-08-01 09:40:33.000000000 +0530 -@@ -21,6 +21,9 @@ - #include "sasaeval.h" - - #include "engine.h" -+#include -+#include -+using namespace std; - - // the surface area code apparently contains some bugs, since it sometimes - // crashes. another possibility is that the surface area math contains some ---- src/sasaeval.h 2008-07-31 00:40:08.000000000 +0530 -+++ src/sasaeval.h 2008-08-01 09:40:04.000000000 +0530 -@@ -24,6 +24,7 @@ - #define SASAEVAL_H - - #include "typedef.h" -+#include - - struct cg_nbt3_nl; // SASA neighbor list. - diff --git a/sci-libs/libghemical/files/libghemical-gcc43.patch b/sci-libs/libghemical/files/libghemical-gcc43.patch deleted file mode 100644 index 53db5fba4d90..000000000000 --- a/sci-libs/libghemical/files/libghemical-gcc43.patch +++ /dev/null @@ -1,21 +0,0 @@ ---- src/atom.h.orig 2008-06-09 03:59:34.262567972 -0500 -+++ src/atom.h 2008-06-09 04:00:07.136698792 -0500 -@@ -10,6 +10,8 @@ - #ifndef ATOM_H - #define ATOM_H - -+#include -+#include - #include "libghemicaldefine.h" - #include "libghemicalconfig2.h" - ---- src/notice.h.orig 2008-06-09 04:00:24.472509840 -0500 -+++ src/notice.h 2008-06-09 04:00:44.608265748 -0500 -@@ -10,6 +10,7 @@ - #ifndef NOTICE_H - #define NOTICE_H - -+#include - #include "libghemicaldefine.h" - #include "libghemicalconfig2.h" - diff --git a/sci-libs/opencascade/opencascade-6.7.1-r1.ebuild b/sci-libs/opencascade/opencascade-6.7.1-r1.ebuild index 3570e2d1999d..276acdc461db 100644 --- a/sci-libs/opencascade/opencascade-6.7.1-r1.ebuild +++ b/sci-libs/opencascade/opencascade-6.7.1-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -31,9 +31,8 @@ DEPEND="app-eselect/eselect-opencascade tbb? ( dev-cpp/tbb )" RDEPEND="${DEPEND}" -# https://bugs.gentoo.org/show_bug.cgi?id=352435 -# https://www.gentoo.org/foundation/en/minutes/2011/20110220_trustees.meeting_log.txt -RESTRICT="bindist mirror" +# https://bugs.gentoo.org/show_bug.cgi?id=600514 +RESTRICT="fetch" CHECKREQS_MEMORY="256M" CHECKREQS_DISK_BUILD="3584M" diff --git a/sci-libs/opencascade/opencascade-6.8.0-r1.ebuild b/sci-libs/opencascade/opencascade-6.8.0-r1.ebuild index 6ce45c8b6086..15b0bbb840a5 100644 --- a/sci-libs/opencascade/opencascade-6.8.0-r1.ebuild +++ b/sci-libs/opencascade/opencascade-6.8.0-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -31,9 +31,8 @@ DEPEND="app-eselect/eselect-opencascade tbb? ( dev-cpp/tbb )" RDEPEND="${DEPEND}" -# https://bugs.gentoo.org/show_bug.cgi?id=352435 -# https://www.gentoo.org/foundation/en/minutes/2011/20110220_trustees.meeting_log.txt -RESTRICT="bindist mirror" +# https://bugs.gentoo.org/show_bug.cgi?id=600514 +RESTRICT="fetch" CHECKREQS_MEMORY="256M" CHECKREQS_DISK_BUILD="3584M" diff --git a/sci-libs/opencascade/opencascade-6.9.0-r1.ebuild b/sci-libs/opencascade/opencascade-6.9.0-r1.ebuild index c155ba143d3a..48cb0a930e0d 100644 --- a/sci-libs/opencascade/opencascade-6.9.0-r1.ebuild +++ b/sci-libs/opencascade/opencascade-6.9.0-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -33,9 +33,8 @@ DEPEND="app-eselect/eselect-opencascade vtk? ( || ( =sci-libs/${MY_VTK}*[imaging] =sci-libs/${MY_VTK}*[qt4] =sci-libs/${MY_VTK}*[rendering] =sci-libs/${MY_VTK}*[views] =sci-libs/${MY_VTK}*[all-modules] ) )" RDEPEND="${DEPEND}" -# https://bugs.gentoo.org/show_bug.cgi?id=352435 -# https://www.gentoo.org/foundation/en/minutes/2011/20110220_trustees.meeting_log.txt -RESTRICT="bindist mirror" +# https://bugs.gentoo.org/show_bug.cgi?id=600514 +RESTRICT="fetch" CHECKREQS_MEMORY="256M" CHECKREQS_DISK_BUILD="3584M" diff --git a/sci-libs/opencascade/opencascade-6.9.1-r1.ebuild b/sci-libs/opencascade/opencascade-6.9.1-r1.ebuild index ce5a35c304ea..01d43e66fe53 100644 --- a/sci-libs/opencascade/opencascade-6.9.1-r1.ebuild +++ b/sci-libs/opencascade/opencascade-6.9.1-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -33,9 +33,8 @@ DEPEND="app-eselect/eselect-opencascade vtk? ( || ( =sci-libs/${MY_VTK}*[imaging] =sci-libs/${MY_VTK}*[qt4] =sci-libs/${MY_VTK}*[rendering] =sci-libs/${MY_VTK}*[views] =sci-libs/${MY_VTK}*[all-modules] ) )" RDEPEND="${DEPEND}" -# https://bugs.gentoo.org/show_bug.cgi?id=352435 -# https://www.gentoo.org/foundation/en/minutes/2011/20110220_trustees.meeting_log.txt -RESTRICT="bindist fetch mirror" +# https://bugs.gentoo.org/show_bug.cgi?id=600514 +RESTRICT="fetch" CHECKREQS_MEMORY="256M" CHECKREQS_DISK_BUILD="3584M" diff --git a/sci-libs/rosetta-fragments/files/3.1-chemshift.patch b/sci-libs/rosetta-fragments/files/3.1-chemshift.patch deleted file mode 100644 index 6ea69b210e82..000000000000 --- a/sci-libs/rosetta-fragments/files/3.1-chemshift.patch +++ /dev/null @@ -1,33 +0,0 @@ ---- chemshift/makefile 2009-01-09 16:08:00.000000000 +0100 -+++ chemshift/makefile.new 2009-04-09 11:30:34.179824057 +0200 -@@ -64,7 +64,7 @@ - # rule to compile executable - compile: $(BASE_NAME).$(COMPILER) - $(BASE_NAME).$(COMPILER) : print ${OBJS} -- $(F77) $(FFLAGS) -o $@ $(OBJS) $(LINKFLAGS) -+ $(F77) $(FFLAGS) $(LDFLAGS) -o $@ $(OBJS) $(LINKFLAGS) - - # rule to compile object files: - .$(COMPILER).%.o: %.f ---- chemshift/make.system 2009-01-09 16:08:00.000000000 +0100 -+++ chemshift/make.system.new 2009-04-09 11:35:16.126466293 +0200 -@@ -61,16 +61,14 @@ - - # defaults - F77=f77 --FFLAGS= - FOPTIMFLAGS=-O - FDEBUGFLAGS=-g - FPROFILEFLAGS=-P - - ifeq ($(COMPILER),gnu) -- F77 = g77 -- FFLAGS = -finline-functions -funroll-loops -W -ffixed-line-length-132 -Wimplicit -- FOPTIMFLAGS = -O -ffast-math -malign-double -- FDEBUGFLAGS = -g -Wall -Wimplicit -Wsurprising -Wformat -W -+ F77 = $(FORTRANC) -+ FOPTIMFLAGS = -+ FDEBUGFLAGS = - FPROFILEFLAGS = -pg - endif - diff --git a/sci-libs/rosetta-fragments/files/3.1-nnmake.patch b/sci-libs/rosetta-fragments/files/3.1-nnmake.patch deleted file mode 100644 index 35568bb9f805..000000000000 --- a/sci-libs/rosetta-fragments/files/3.1-nnmake.patch +++ /dev/null @@ -1,107 +0,0 @@ ---- nnmake/make.system 2009-01-09 16:07:59.000000000 +0100 -+++ nnmake/make.system.new 2009-04-09 10:54:50.000000000 +0200 -@@ -62,10 +62,9 @@ - FPROFILEFLAGS=-P - - ifeq ($(COMPILER),gnu) -- F77 = g77 -- FFLAGS = -finline-functions -funroll-loops -W -ffixed-line-length-132 -Wimplicit -- FOPTIMFLAGS = -O -ffast-math -malign-double -- FDEBUGFLAGS = -g -Wall -Wimplicit -Wsurprising -Wformat -W -+ F77 = $(FORTRANC) -+ FOPTIMFLAGS = -+ FDEBUGFLAGS = - FPROFILEFLAGS = -pg - endif - ---- nnmake/dipolar_nn.f 2009-01-09 16:08:00.000000000 +0100 -+++ nnmake/dipolar_nn.f.new 2009-04-09 11:06:24.923302302 +0200 -@@ -1396,7 +1396,7 @@ - write(0,*)'rejected' - write(0,*)x(1,iset),x(2,iset),x(3,iset),x(4,iset),x(5,iset) - do i=1,maplength(iset) -- write(0,'(i,6f6.3)')i,A(i,1),A(i,2),A(i,3),A(i,4),A(i,5), -+ write(0,'(i6,6f6.3)')i,A(i,1),A(i,2),A(i,3),A(i,4),A(i,5), - # b(i) - enddo - goto 300 ---- nnmake/make.system 2009-04-09 11:10:34.399945087 +0200 -+++ nnmake/make.system.new 2009-04-09 11:19:41.287390259 +0200 -@@ -55,7 +55,6 @@ - - # defaults - F77=f77 --FFLAGS= - FOPTIMFLAGS=-O - FDEBUGFLAGS=-g - FPROFILEFLAGS=-P ---- nnmake/makefile 2009-01-09 16:08:00.000000000 +0100 -+++ nnmake/makefile.new 2009-04-09 11:22:43.454037887 +0200 -@@ -102,7 +102,7 @@ - # rule to compile executable - compile: print $(BASE_NAME).$(COMPILER) - $(BASE_NAME).$(COMPILER) : ${OBJS} -- $(F77) $(FFLAGS) -o $@ $(OBJS) $(LINKFLAGS) -+ $(F77) $(FFLAGS) $(LDFLAGS) -o $@ $(OBJS) $(LINKFLAGS) - - coord_compile: print $(COORD_BASE_NAME).$(COMPILER) - $(COORD_BASE_NAME).$(COMPILER) : ${COORD_OBJS} ---- nnmake/make_fragments.pl 2009-01-09 15:53:33.000000000 +0100 -+++ nnmake/make_fragments.pl.new 2009-04-09 13:01:52.987174602 +0200 -@@ -19,38 +19,38 @@ - - my $TAIL = "_v1_3"; - --$src_dir = '/work/chu/rosetta/rosetta_C++/rosetta-2.2.0/rosetta_fragments'; --$shareware_dir = '/work/chu/src/shareware'; --$scratch = "/scratch/shared"; -+$src_dir = '/'; -+$shareware_dir = '$src_dir/usr/share'; -+$scratch = "$src_dir/scratch/shared"; - - # psi-blast - #my $BLAST_BIN_DIR = "$shareware_dir/new_blast/blast-2.2.12/bin"; --my $PSIBLAST = "$shareware_dir/blast/bin/blastpgp"; # PSI-BLAST (duh.) --my $NR = "/$scratch/genomes/nr"; # nr blast database filename --my $VALL_BLAST_DB = "/$scratch/nnmake_database/vall.blast.2006-05-05"; # vall blast database filename (cvs respository 'nnmake_database') --my $BLOSUM = "$scratch/nnmake_database/"; # BLOSUM score matrices directory (cvs repository 'nnmake_database') -+my $PSIBLAST = "$src_dir/usr/bin/blastpgp"; # PSI-BLAST (duh.) -+my $NR = "$shareware_dir/blast-db/nr"; # nr blast database filename -+my $VALL_BLAST_DB = "$shareware_dir/rosetta-fragments/nnmake_database/vall.blast.2006-05-05"; # vall blast database filename (cvs respository 'nnmake_database') -+my $BLOSUM = "$shareware_dir/rosetta-fragments/nnmake_database/"; # BLOSUM score matrices directory (cvs repository 'nnmake_database') - - # psipred --my $FILTNR = "$scratch/genomes/filtnr"; # filtnr blast database filename --my $MAKEMAT = "$shareware_dir/blast/bin/makemat"; # makemat utility (part of NCBI tools) --my $PSIPRED = "$shareware_dir/psipred/bin/psipred"; # psipred --my $PSIPASS2 = "$shareware_dir/psipred/bin/psipass2"; # psipass2 (part of psipred pkg) -+my $FILTNR = "$src_dir/tmp/filtnr"; # filtnr blast database filename -+my $MAKEMAT = "$src_dir/usr/bin/makemat"; # makemat utility (part of NCBI tools) -+my $PSIPRED = "$src_dir/usr/bin/psipred"; # psipred -+my $PSIPASS2 = "$src_dir/usr/bin/psipass2"; # psipass2 (part of psipred pkg) - my $PSIPRED_DATA = "$shareware_dir/psipred/data"; # dir containing psipred data files. - - # prof - #my $PROF = "$shareware_dir/prof/run_prof.py"; --my $PROF = "$src_dir/nnmake/run_prof.py"; # remember to change prof executable location in run_prof.py -+my $PROF = "$src_dir/usr/bin/run_prof.py"; # remember to change prof executable location in run_prof.py - - # nnmake --my $VALL = "$scratch/nnmake_database"; # dir containing vall database (cvs repository 'nnmake_database') --my $VALL2 = "$scratch/nnmake_database"; # alt dir containing vall database (cvs repository 'nnmake_database') -+my $VALL = "$shareware_dir/rosetta-fragments/nnmake_database"; # dir containing vall database (cvs repository 'nnmake_database') -+my $VALL2 = "$shareware_dir/rosetta-fragments/nnmake_database"; # alt dir containing vall database (cvs repository 'nnmake_database') - my $VALL_NAME = "vall.dat.2006-05-05"; # filename of vall (vall.dat. and vall_cst_coord.dat. must exist) --my $NNMAKE = "$src_dir/nnmake/pNNMAKE.gnu"; # nnmake binary (cvs respository 'nnmake') --my $TRIMLOOPS = "$src_dir/nnmake/trimLoopLibrary.pl"; # trimLoopLibrary.pl (cvs respository 'nnmake') -+my $NNMAKE = "$src_dir/usr/bin/pNNMAKE"; # nnmake binary (cvs respository 'nnmake') -+my $TRIMLOOPS = "$src_dir/usr/bin/trimLoopLibrary.pl"; # trimLoopLibrary.pl (cvs respository 'nnmake') - - # chemshift --my $CHEMSHIFT = "$src_dir/chemshift/pCHEMSHIFT.gnu"; # chemshift binary (cvs repository 'chemshift') --my $TALOS_DB = "$scratch/chemshift_database"; # TALOS databases directory (cvs respository 'chemshift_database') -+my $CHEMSHIFT = "$src_dir/usr/bin/pCHEMSHIFT"; # chemshift binary (cvs repository 'chemshift') -+my $TALOS_DB = "$shareware_dir/rosetta-fragments/chemshift_database"; # TALOS databases directory (cvs respository 'chemshift_database') - - # jufo (secondary structure prediction software) - my $JUFO = "$shareware_dir/jufo/molecule.exe"; # jufo executable diff --git a/sci-libs/rtabmap/Manifest b/sci-libs/rtabmap/Manifest index 85dc4c86f5fd..6cf6795da0bc 100644 --- a/sci-libs/rtabmap/Manifest +++ b/sci-libs/rtabmap/Manifest @@ -1 +1,2 @@ DIST rtabmap-0.11.13.tar.gz 17744796 SHA256 683dce8656d41d1733ae534144360b3f106080f8da14492a8908d8317134eddb SHA512 648f6ba73b9d2d2d659fd07af6c8c7f502d450e64dcf189edc78e45adc92ba77dda0647a358d55d4c0556bc84334ab1d92b0809b392382ff7f3f2e067da24549 WHIRLPOOL 4a060274b1e8cad55afc8e3f54756d2b746b0170b56bd2f8746b01077ac6790fc6562879639aaeb63ad9b08af7d6e9c1771d75162e6dd9bada2a71ba9daf31c0 +DIST rtabmap-0.11.14.tar.gz 18997635 SHA256 3ca1e46889fe91e83e0de56baa8c8121cc68e0efd1039bd2684323faa8a52b25 SHA512 0793dbe7e58857ef6b5d00296cfe45a2df69d89fac422d3c43d8b550588c500b53b7a0af05683517d40b56e6f7d2af6b9e0dbdbcb1899a49e9736745feee75ae WHIRLPOOL fed930d36bbfcb142a29d010207ece168cb2c8c99f73636bfa0f8bca6d7265dc09b76026715a4b23200ba268022c00be177e28059b7c3c7d83aeb0e4b8eaadcd diff --git a/sci-libs/rtabmap/rtabmap-0.11.14.ebuild b/sci-libs/rtabmap/rtabmap-0.11.14.ebuild new file mode 100644 index 000000000000..a4df9bc1b2e8 --- /dev/null +++ b/sci-libs/rtabmap/rtabmap-0.11.14.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +SCM="" +if [ "${PV#9999}" != "${PV}" ] ; then + SCM="git-r3" + EGIT_REPO_URI="https://github.com/introlab/rtabmap" +fi + +inherit ${SCM} cmake-utils multilib + +if [ "${PV#9999}" != "${PV}" ] ; then + KEYWORDS="" + SRC_URI="" +else + KEYWORDS="~amd64" + SRC_URI="https://github.com/introlab/rtabmap/archive/${PV}.tar.gz -> ${P}.tar.gz" +fi + +DESCRIPTION="Real-Time Appearance-Based Mapping (RGB-D Graph SLAM)" +HOMEPAGE="http://introlab.github.io/rtabmap/" +LICENSE="BSD" +SLOT="0" +IUSE="examples ieee1394 openni2 qt5" + +RDEPEND=" + media-libs/opencv:=[qt5(-)?] + sci-libs/pcl:=[openni,vtk] + sci-libs/vtk:=[qt5(-)?] + sys-libs/zlib + sci-libs/octomap:= + ieee1394? ( media-libs/libdc1394 ) + openni2? ( dev-libs/OpenNI2 ) + qt5? ( + dev-qt/qtwidgets:5 + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qtsvg:5 + ) +" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +src_configure() { + local mycmakeargs=( + "-DWITH_QT=$(usex qt5 ON OFF)" + "-DWITH_DC1394=$(usex ieee1394 ON OFF)" + "-DWITH_OPENNI2=$(usex openni2 ON OFF)" + "-DBUILD_EXAMPLES=$(usex examples ON OFF)" + ) + cmake-utils_src_configure +} diff --git a/sci-physics/hoomd-blue/files/hoomd-blue-2.0.1-cxx11.patch b/sci-physics/hoomd-blue/files/hoomd-blue-2.0.1-cxx11.patch deleted file mode 100644 index 523c4f6ddfe2..000000000000 --- a/sci-physics/hoomd-blue/files/hoomd-blue-2.0.1-cxx11.patch +++ /dev/null @@ -1,53 +0,0 @@ -From 7dce8d65ad8069c6a7fdb89ebea13f55d2db8182 Mon Sep 17 00:00:00 2001 -From: "Joshua A. Anderson" -Date: Wed, 20 Jul 2016 14:44:07 -0400 -Subject: [PATCH] Always add -std=c++11 to CXX_FLAGS - -refs #173 ---- - CMake/hoomd/HOOMDCFlagsSetup.cmake | 18 ++++++++++-------- - 1 file changed, 10 insertions(+), 8 deletions(-) - -diff --git a/CMake/hoomd/HOOMDCFlagsSetup.cmake b/CMake/hoomd/HOOMDCFlagsSetup.cmake -index 2655913..db503b3 100644 ---- a/CMake/hoomd/HOOMDCFlagsSetup.cmake -+++ b/CMake/hoomd/HOOMDCFlagsSetup.cmake -@@ -32,10 +32,10 @@ if(NOT PASSED_FIRST_CONFIGURE) - set(CMAKE_C_FLAGS_RELEASE "-march=${GCC_ARCH} -O3 -funroll-loops -DNDEBUG -Wall -Wno-unknown-pragmas" CACHE STRING "Flags used by the compiler during release builds." FORCE) - set(CMAKE_C_FLAGS_RELWITHDEBINFO "-march=${GCC_ARCH} -g -O3 -funroll-loops -DNDEBUG -Wall -Wno-unknown-pragmas" CACHE STRING "Flags used by the compiler during release builds with debug info." FORCE) - -- set(CMAKE_CXX_FLAGS_DEBUG "-march=${GCC_ARCH} -g -Wall -Wno-unknown-pragmas -std=c++11" CACHE STRING "Flags used by the compiler during debug builds." FORCE) -- set(CMAKE_CXX_FLAGS_MINSIZEREL "-march=${GCC_ARCH} -Os -Wall -Wno-unknown-pragmas -DNDEBUG -std=c++11" CACHE STRING "Flags used by the compiler during minimum size release builds." FORCE) -- set(CMAKE_CXX_FLAGS_RELEASE "-march=${GCC_ARCH} -O3 -funroll-loops -DNDEBUG -Wall -Wno-unknown-pragmas -std=c++11" CACHE STRING "Flags used by the compiler during release builds." FORCE) -- set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-march=${GCC_ARCH} -g -O3 -funroll-loops -DNDEBUG -Wall -Wno-unknown-pragmas -std=c++11" CACHE STRING "Flags used by the compiler during release builds with debug info." FORCE) -+ set(CMAKE_CXX_FLAGS_DEBUG "-march=${GCC_ARCH} -g -Wall -Wno-unknown-pragmas" CACHE STRING "Flags used by the compiler during debug builds." FORCE) -+ set(CMAKE_CXX_FLAGS_MINSIZEREL "-march=${GCC_ARCH} -Os -Wall -Wno-unknown-pragmas -DNDEBUG" CACHE STRING "Flags used by the compiler during minimum size release builds." FORCE) -+ set(CMAKE_CXX_FLAGS_RELEASE "-march=${GCC_ARCH} -O3 -funroll-loops -DNDEBUG -Wall -Wno-unknown-pragmas" CACHE STRING "Flags used by the compiler during release builds." FORCE) -+ set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-march=${GCC_ARCH} -g -O3 -funroll-loops -DNDEBUG -Wall -Wno-unknown-pragmas" CACHE STRING "Flags used by the compiler during release builds with debug info." FORCE) - - elseif(CMAKE_CXX_COMPILER MATCHES "icpc") - # default flags for intel -@@ -44,10 +44,10 @@ if(NOT PASSED_FIRST_CONFIGURE) - set(CMAKE_C_FLAGS_RELEASE "-xHOST -O3 -DNDEBUG" CACHE STRING "Flags used by the compiler during release builds." FORCE) - set(CMAKE_C_FLAGS_RELWITHDEBINFO "-xHOST -g -O3 -DNDEBUG" CACHE STRING "Flags used by the compiler during release builds with debug info." FORCE) - -- set(CMAKE_CXX_FLAGS_DEBUG "-xHOST -O0 -g -std=c++11" CACHE STRING "Flags used by the compiler during debug builds." FORCE) -- set(CMAKE_CXX_FLAGS_MINSIZEREL "-xHOST -Os -DNDEBUG -std=c++11" CACHE STRING "Flags used by the compiler during minimum size release builds." FORCE) -- set(CMAKE_CXX_FLAGS_RELEASE "-xHOST -O3 -DNDEBUG -std=c++11" CACHE STRING "Flags used by the compiler during release builds." FORCE) -- set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-xHOST -g -O3 -DNDEBUG -std=c++11" CACHE STRING "Flags used by the compiler during release builds with debug info." FORCE) -+ set(CMAKE_CXX_FLAGS_DEBUG "-xHOST -O0 -g" CACHE STRING "Flags used by the compiler during debug builds." FORCE) -+ set(CMAKE_CXX_FLAGS_MINSIZEREL "-xHOST -Os -DNDEBUG" CACHE STRING "Flags used by the compiler during minimum size release builds." FORCE) -+ set(CMAKE_CXX_FLAGS_RELEASE "-xHOST -O3 -DNDEBUG" CACHE STRING "Flags used by the compiler during release builds." FORCE) -+ set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-xHOST -g -O3 -DNDEBUG" CACHE STRING "Flags used by the compiler during release builds with debug info." FORCE) - - else(CMAKE_COMPILER_IS_GNUCXX) - message(STATUS "No default CXXFLAGS for your compiler, set them manually") -@@ -64,3 +64,5 @@ if(NOT PASSED_FIRST_CONFIGURE) - - SET(PASSED_FIRST_CONFIGURE ON CACHE INTERNAL "First configure has run: CXX_FLAGS have had their defaults changed" FORCE) - endif(NOT PASSED_FIRST_CONFIGURE) -+ -+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11") --- -2.7.3 - diff --git a/sys-apps/portage/portage-2.3.3.ebuild b/sys-apps/portage/portage-2.3.3.ebuild index 4cb101b61d33..92b48f4aab08 100644 --- a/sys-apps/portage/portage-2.3.3.ebuild +++ b/sys-apps/portage/portage-2.3.3.ebuild @@ -17,7 +17,7 @@ DESCRIPTION="Portage is the package management and distribution system for Gento HOMEPAGE="https://wiki.gentoo.org/wiki/Project:Portage" LICENSE="GPL-2" -KEYWORDS="alpha amd64 ~arm ~arm64 ~hppa ia64 ~m68k ~mips ppc ppc64 ~s390 ~sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd" +KEYWORDS="alpha amd64 ~arm ~arm64 hppa ia64 ~m68k ~mips ppc ppc64 ~s390 ~sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd" SLOT="0" IUSE="build doc epydoc +ipc linguas_ru selinux xattr" diff --git a/virtual/acl/acl-0-r2.ebuild b/virtual/acl/acl-0-r2.ebuild index 49ab52e5dd2a..248d3770f4f2 100644 --- a/virtual/acl/acl-0-r2.ebuild +++ b/virtual/acl/acl-0-r2.ebuild @@ -2,19 +2,14 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI="4" +EAPI=5 inherit multilib-build DESCRIPTION="Virtual for acl support (sys/acl.h)" -HOMEPAGE="" -SRC_URI="" - -LICENSE="" SLOT="0" KEYWORDS="~alpha amd64 arm ~arm64 hppa ia64 ~m68k ~mips ppc ppc64 ~s390 ~sh sparc x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux" IUSE="static-libs" -DEPEND="" RDEPEND="kernel_linux? ( >=sys-apps/acl-2.2.52-r1[static-libs?,${MULTILIB_USEDEP}] ) kernel_FreeBSD? ( >=sys-freebsd/freebsd-lib-9.1-r10[${MULTILIB_USEDEP}] )" diff --git a/virtual/cron/cron-0-r1.ebuild b/virtual/cron/cron-0-r1.ebuild index a50e09446213..dfac1278a16b 100644 --- a/virtual/cron/cron-0-r1.ebuild +++ b/virtual/cron/cron-0-r1.ebuild @@ -2,18 +2,12 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=4 +EAPI=5 DESCRIPTION="Virtual for cron" -HOMEPAGE="" -SRC_URI="" - -LICENSE="" SLOT="0" KEYWORDS="alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd" -IUSE="" -DEPEND="" RDEPEND="|| ( sys-process/cronie sys-process/vixie-cron sys-process/bcron diff --git a/virtual/libiconv/libiconv-0-r1.ebuild b/virtual/libiconv/libiconv-0-r1.ebuild index fcfea0c6b517..d6a55c7f13cf 100644 --- a/virtual/libiconv/libiconv-0-r1.ebuild +++ b/virtual/libiconv/libiconv-0-r1.ebuild @@ -2,18 +2,14 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=4 +EAPI=5 inherit multilib-build DESCRIPTION="Virtual for the GNU conversion library" -HOMEPAGE="" -SRC_URI="" -LICENSE="" SLOT="0" KEYWORDS="alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris ~x86-winnt" IUSE="elibc_glibc elibc_uclibc elibc_musl elibc_mintlib" -DEPEND="" # - Don't put elibc_glibc? ( sys-libs/glibc ) to avoid circular deps between # that and gcc diff --git a/virtual/libiconv/libiconv-0-r2.ebuild b/virtual/libiconv/libiconv-0-r2.ebuild index ccadb9ae71ba..72e61ece5b8d 100644 --- a/virtual/libiconv/libiconv-0-r2.ebuild +++ b/virtual/libiconv/libiconv-0-r2.ebuild @@ -2,18 +2,14 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=4 +EAPI=5 inherit multilib-build DESCRIPTION="Virtual for the GNU conversion library" -HOMEPAGE="" -SRC_URI="" -LICENSE="" SLOT="0" KEYWORDS="alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris ~x86-winnt" IUSE="elibc_glibc elibc_uclibc elibc_musl elibc_mintlib" -DEPEND="" # - Don't put elibc_glibc? ( sys-libs/glibc ) to avoid circular deps between # that and gcc diff --git a/virtual/libintl/libintl-0-r1.ebuild b/virtual/libintl/libintl-0-r1.ebuild index 82096fd9bd1d..9475a81fdfd1 100644 --- a/virtual/libintl/libintl-0-r1.ebuild +++ b/virtual/libintl/libintl-0-r1.ebuild @@ -2,18 +2,14 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=4 +EAPI=5 inherit multilib-build DESCRIPTION="Virtual for the GNU Internationalization Library" -HOMEPAGE="" -SRC_URI="" -LICENSE="" SLOT="0" KEYWORDS="alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris" IUSE="elibc_glibc elibc_uclibc" -DEPEND="" # - Don't put elibc_glibc? ( sys-libs/glibc ) to avoid circular deps between # that and gcc. And don't force uClibc to dep on this. diff --git a/virtual/libintl/libintl-0-r2.ebuild b/virtual/libintl/libintl-0-r2.ebuild index 8ada350831eb..18ad10d92384 100644 --- a/virtual/libintl/libintl-0-r2.ebuild +++ b/virtual/libintl/libintl-0-r2.ebuild @@ -2,13 +2,11 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI="5" +EAPI=5 inherit multilib-build DESCRIPTION="Virtual for the GNU Internationalization Library" - -LICENSE="" SLOT="0" KEYWORDS="alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris" IUSE="elibc_glibc elibc_musl elibc_uclibc" diff --git a/virtual/mta/mta-1.ebuild b/virtual/mta/mta-1.ebuild index 0dfcf6097f2e..d46e93899b63 100644 --- a/virtual/mta/mta-1.ebuild +++ b/virtual/mta/mta-1.ebuild @@ -2,18 +2,11 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=4 +EAPI=5 DESCRIPTION="Virtual for Message Transfer Agents" -HOMEPAGE="" -SRC_URI="" - -LICENSE="" SLOT="0" KEYWORDS="alpha amd64 arm arm64 hppa ia64 m68k ~mips ppc ppc64 s390 sh sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris" -IUSE="" - -DEPEND="" # mail-mta/citadel is from sunrise RDEPEND="|| ( mail-mta/nullmailer diff --git a/www-client/opera-developer/Manifest b/www-client/opera-developer/Manifest index 054160698f35..94c47b55d8ed 100644 --- a/www-client/opera-developer/Manifest +++ b/www-client/opera-developer/Manifest @@ -1,4 +1,4 @@ -DIST opera-developer_44.0.2463.0_amd64.deb 50539436 SHA256 9fcb7c5976f548a25cb5f358040416f0911a26a3ddcbb4db4657224de324fcac SHA512 bc26c397e9e7f6f52a19b9ffff4d3c4fc932aa23c6514a7d50be172cb2efb79805f3b1f7b3df9d4fde6dda33f04d9ec14b914b1dc2c4fec597249f7a37bdbd12 WHIRLPOOL fdd97d7f60176a9597d3ba674e79c4089c69c0525ff10006c21725a13bc1e7906df9ae02b1262ddf1a53c3c586c50c1f4ae5335411be0d47c0d7e03d905f077e -DIST opera-developer_44.0.2463.0_i386.deb 52191772 SHA256 e753098686f530c1e2d89179ef64f4a53796463cada2a1c0b0052c0c1cd397ca SHA512 967f64c6ecb5aa1484d8d8709922de10b01859d002058f47272b608dbafcfb73e66bb7944485a22531d64b7ea9dbea5f0dc54e8dff5594e4308b8d8738e5d96b WHIRLPOOL 62c89eb67e42f42acda0dfad93f1ab8ef0d80d083f85cb5f51953b3d2e5b8c0f9dbf5ae2cbe3c2178981bf2467778bdd6de93920589180d1ff2e2081ece321f8 DIST opera-developer_44.0.2475.0_amd64.deb 50686050 SHA256 0294fa2fec5eaa87f688a0561edd52f31d5df1185c16d1e55df868ad476fe0bf SHA512 eefd52d6cf4e66781ca2a01776d72eb4229a36a45c585588043e9e2786dd7e28f1697f06bd9bc1fc6413f3511e7da247669125f2ced8419453d435f312eb98ea WHIRLPOOL 114fed3dcf6ccfad95b1e841364ecd37138f50e6abe5f14ed94992561d9ec59b6cffc53f548b4ac38ceb5a23dbd9d52099ea7e5b0ed8067c9fe4e6d0e1d3ebbc DIST opera-developer_44.0.2475.0_i386.deb 51739112 SHA256 1cac8ee249199bb94a16bfffd95d6877b7e7599502602ac87c1edf23546e23f7 SHA512 f904cf6f3c58de54e85a352d3e7797a37e6cdc777937788a38da291eb4de3772afae012ef77d5207442997cdd00fe34f08028a149ea734781c7496a7ff01f4e5 WHIRLPOOL d55813fa1c4c1dcddf044f3ac86a9ebe21a1ee567a513c07ba40ff6c838323fce7a058b77bb6ede40e5739f71fcf4940d3ba65baaf76098760e5eeeb9b5a37fc +DIST opera-developer_44.0.2487.0_amd64.deb 50550432 SHA256 f0426417a2d6e71888c2a080aad52b7a8dd624f4a04d3368c8796310a76c84ad SHA512 c5eb9fb84dad80aff56064ec7cf7848999388f53bc7a648daf7524ed6b3d3ebdddfad2c1d0f3632a4c05954004aa2da36b263ebcc715c0deb7e91baedcb98c2d WHIRLPOOL c831217c116bcffb7cef15454ed1d431478609304e8440cd652fc3931eb3aad44284fe9bcb6ecfaf0762161659242265cbfe5db6e763c0ec0aae22f4c35bbc6f +DIST opera-developer_44.0.2487.0_i386.deb 51824640 SHA256 34769301b6098f75fb68634c948f0e75dcc8cf75ab616293dd02a4d2b5d22506 SHA512 bbedae5b1ffe4dd45a8cc6d92f306eebbf1d671a59021fe555e78ec27be301fd9749612d0b8c272ebe18f397c55ced2af3adea2d60b37e783f4b2450ce1b1d15 WHIRLPOOL 8407b1f42f0fb2065c755ac97b2d8065b4d0238b7aa6b09c4c76023ea18d27a5d4555df3c0d7eafff633b9184e1e560a2b40fc2e88c41f92f14fde25492ae920 diff --git a/www-client/opera-developer/opera-developer-44.0.2463.0.ebuild b/www-client/opera-developer/opera-developer-44.0.2487.0.ebuild similarity index 100% rename from www-client/opera-developer/opera-developer-44.0.2463.0.ebuild rename to www-client/opera-developer/opera-developer-44.0.2487.0.ebuild