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Sync with portage [Mon Oct 26 14:34:33 MSK 2015].

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mhiretskiy 92
root 9 years ago
parent dbe7435f08
commit e45080a4e2
305 changed files with 368 additions and 12398 deletions
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5
app-office/sc/sc-7.16-r1.ebuild
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@ -3,6 +3,7 @@
# $Id$
EAPI=5
inherit eutils multilib toolchain-funcs
DESCRIPTION="sc is a free curses-based spreadsheet program that uses key bindings similar to vi and less"
@ -17,9 +18,7 @@ COMMON_DEPEND=">=sys-libs/ncurses-5.2"
DEPEND="virtual/pkgconfig"
RDEPEND="
${COMMON_DEPEND}
!dev-lang/stratego
!<sci-chemistry/ccp4-apps-6.1.3-r4
"
!dev-lang/stratego"
src_prepare() {
epatch \

53
dev-db/cdb/cdb-0.75-r4.ebuild
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@ -0,0 +1,53 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit eutils multilib toolchain-funcs
KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~x86-freebsd ~amd64-linux ~x86-linux ~ppc-macos"
DESCRIPTION="Fast, reliable, simple package for creating and reading constant databases"
HOMEPAGE="http://cr.yp.to/cdb.html"
SRC_URI="http://cr.yp.to/cdb/${P}.tar.gz"
LICENSE="public-domain"
SLOT="0"
IUSE=""
DEPEND=">=sys-apps/sed-4
!dev-db/tinycdb"
RDEPEND="${DEPEND}"
src_prepare() {
epatch "${FILESDIR}"/${P}-errno.diff
epatch "${FILESDIR}"/${P}-stdint.diff
sed -i -e 's/head -1/head -n 1/g' Makefile \
|| die "sed Makefile failed"
}
src_configure() {
echo "$(tc-getCC) ${CFLAGS} -fPIC" > conf-cc
echo "$(tc-getCC) ${LDFLAGS}" > conf-ld
echo "${EPREFIX}/usr" > conf-home
}
src_install() {
dobin cdbdump cdbget cdbmake cdbmake-12 cdbmake-sv cdbstats cdbtest \
|| die "dobin failed"
# ok so ... first off, some automakes fail at finding
# cdb.a, so install that now
dolib *.a || die "dolib failed"
# then do this pretty little symlinking to solve the somewhat
# cosmetic library issue at hand
dosym cdb.a /usr/$(get_libdir)/libcdb.a || die "dosym failed"
# uint32.h needs installation too, otherwise compiles depending
# on it will fail
insinto /usr/include/cdb
doins cdb*.h buffer.h alloc.h uint32.h || die "doins failed"
dodoc CHANGES FILES README SYSDEPS TODO VERSION
}

8
dev-db/wxsqlite3/wxsqlite3-3.2.1-r1.ebuild
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@ -15,23 +15,19 @@ SRC_URI="mirror://sourceforge/wxcode/${P}.tar.gz"
LICENSE="wxWinLL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="debug"
IUSE=""
DEPEND="
x11-libs/wxGTK:3.0[X,debug=]
x11-libs/wxGTK:3.0[X]
dev-db/sqlite:3"
RDEPEND="${DEPEND}"
#S="${WORKDIR}/${P%.1}"
src_prepare() {
local wxdebug
rm -rf sqlite3 || die
cp configure30 configure || die
use debug && wxdebug="d"
sed \
-e "s:@WXDEBUG@:${wxdebug}:g" \
-e "s:@WXVERSION@:${WX_GTK_VER}:g" \
-e "s:@LIBDIR@:$(get_libdir):g" \
-e "s:@VERSION@:${PV}:g" \

2
dev-java/mojarra/mojarra-2.2.12-r1.ebuild
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@ -4,7 +4,7 @@
EAPI=5
inherit eutils java-pkg-2 java-pkg-simple
inherit java-pkg-2 java-pkg-simple
DESCRIPTION="Project Mojarra - GlassFish's Implementation for JavaServer Faces API"
HOMEPAGE="https://javaserverfaces.dev.java.net/"

1
dev-libs/libjwc_c/Manifest
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@ -1 +0,0 @@
DIST libjwc_c-1.1.tar.gz 253637 SHA256 4e3c5406347356ac4549b2b977c8011391926470cc3556e54148070b929d9ea9 SHA512 5a095fdbf4f70d012f718d2bcd2a9689bf788801df3f3f97bead70861d08d5f6b5a9ac879e02c260974b755906d35de168646947900bcb18dad40839846d87ad WHIRLPOOL bca0bb19e2898c18f29a275c1997bf55058f5efbbc1147cb7e7a967f2eafb346c0d74975208dc6dd749ba60b256dca3c1548d9a58bd938fb19d77946a1aaa85a

20
dev-libs/libjwc_c/files/612-gentoo.patch
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@ -1,20 +0,0 @@
diff -Nu libjwc_c-1.1/imglib.c libjwc_c/imglib.c
--- libjwc_c-1.1/imglib.c 1999-08-17 15:58:11.000000000 +0200
+++ libjwc_c/imglib.c 2004-06-03 14:24:05.000000000 +0200
@@ -4259,7 +4259,7 @@
{
/* Note: In this routine the first local axis is called 'x' and the
- second logal axi is called 'y' */
+ second local axis is called 'y' */
int mxcent; /* Current max no. of elements in active
spots array */
@@ -4469,6 +4469,7 @@
/* skipping condition */
+ iymid = (actspots[j].iyend+actspots[j].iybeg)/2;
itmp = abs(iymid-actspots[j].iycent);
if (abs((actspots[j].iyend+actspots[j].iybeg) -(iel+ibl))>
abs((actspots[j].iyend-actspots[j].iybeg) +(iel-ibl))&&

31
dev-libs/libjwc_c/libjwc_c-1.1-r2.ebuild
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@ -1,31 +0,0 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
AUTOTOOLS_AUTORECONF=yes
inherit autotools-utils
PATCH="612"
DESCRIPTION="additional c library for ccp4"
HOMEPAGE="http://www.ccp4.ac.uk/main.html"
SRC_URI="ftp://ftp.ccp4.ac.uk/jwc/${P}.tar.gz"
SLOT="0"
LICENSE="GPL-2"
KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="static-libs"
DEPEND="sci-libs/ccp4-libs"
RDEPEND="${DEPEND}"
PATCHES=( "${FILESDIR}"/${PATCH}-gentoo.patch )
src_prepare() {
rm missing || die
echo "libjwc_c_la_LIBADD = -lm -lccp4f" >> Makefile.am || die
autotools-utils_src_prepare
}

8
dev-libs/libjwc_c/metadata.xml
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@ -1,8 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
<email>sci@gentoo.org</email>
</maintainer>
</pkgmetadata>

1
dev-libs/libjwc_f/Manifest
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@ -1 +0,0 @@
DIST libjwc_f-1.1.tar.gz 170973 SHA256 9c05d5bac2a2e75d5fd490665c795ae31280da886e30f66cf39b3a32f2981199 SHA512 6d947e1513c137a23a4b6c2525e2a2f71c31a41f37455b9b3c97bd4c82128d5b3f4a7bfdd14aba57fbc258dcdcb8fa55e420a8573576992d0ae164bfe394f8d1 WHIRLPOOL 2652f3f43451cfb378d931ccff22a20131f2f44c40c2fe4c51ea45ef08f2e08306c1362f256c0c13014b9db3418ccbce437e4ccea41faae066c800a2ece02551

100
dev-libs/libjwc_f/files/612-gentoo.patch
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@ -1,100 +0,0 @@
diff -Nu libjwc_f-1.1/configure.in ccp4-6.1.2/x-windows/libjwc/libjwc_f/configure.in
--- libjwc_f-1.1/configure.in 1999-10-21 16:07:14.000000000 +0200
+++ ccp4-6.1.2/x-windows/libjwc/libjwc_f/configure.in 2004-03-11 17:31:45.000000000 +0100
@@ -8,6 +8,7 @@
AC_CANONICAL_SYSTEM
AM_INIT_AUTOMAKE(libjwc_f, 1.1)
+AM_MAINTAINER_MODE
case ${with_g77} in
"yes" ) CC="gcc" GCC=yes F77=g77 ;;
@@ -17,7 +18,7 @@
AC_PROG_F77
AC_PROG_INSTALL
-AC_PROG_RANLIB
+AC_PROG_LIBTOOL
case "$target" in
*irix6* )
@@ -26,8 +27,9 @@
case "$FFLAGS" in
*-64* ) ;; # assume they meant it
*-o32* | *-32* ) ;; # presumably OK
- * ) FFLAGS="$FFLAGS -o32 -O -g3"
- CFLAGS=-32
+ *-n32* ) ;;
+ * ) FFLAGS="$FFLAGS -n32 -O -g3"
+ CFLAGS=-n32
AC_MSG_WARN([
*** Using compiler flag -o32 for probable compatibility with
@@ -47,8 +49,33 @@
*** See the INSTALL file for more info.
])
fi ;;
+ *linux* )
+ case $F77 in
+ g77*)
+ case "$FFLAGS" in
+ *no-second-underscore* ) ;; # presumably OK
+ * ) FFLAGS="$FFLAGS -fno-second-underscore -fno-globals" ;;
+ esac
+ esac ;;
+ *darwin* )
+ case $F77 in
+ g77*)
+ case "$FFLAGS" in
+ *no-second-underscore* ) ;; # presumably OK
+ * ) FFLAGS="$FFLAGS -fno-second-underscore -fno-globals" ;;
+ esac
+#mac g77 currently goes not handle -fno-common
+ enable_shared=no;
+ esac ;;
* )
esac
+# efc, version 7.1 at least does not support soname, so use CC
+case "$F77" in
+ *efc ) F77LD=${F77LD:-'${CC}'} ;;
+ * ) F77LD=${F77LD:-'${F77}'}
+esac
+
+AC_SUBST(F77LD)
AM_PROG_LIBTOOL
Common subdirectories: libjwc_f-1.1/doc and ccp4-6.1.2/x-windows/libjwc/libjwc_f/doc
diff -Nu libjwc_f-1.1/opn_scr.f ccp4-6.1.2/x-windows/libjwc/libjwc_f/opn_scr.f
--- libjwc_f-1.1/opn_scr.f 1999-09-07 12:50:13.000000000 +0200
+++ ccp4-6.1.2/x-windows/libjwc/libjwc_f/opn_scr.f 2000-10-25 13:03:09.000000000 +0200
@@ -16,6 +16,6 @@
C
C====== Open the file
C
- OPEN (IUN_SCR, STATUS='SCRATCH')
- RETURN
+C OPEN (IUN_SCR, STATUS='SCRATCH')
+ CALL CCPDPN(IUN_SCR,'JWCSCR','SCRATCH','U',0, IFAIL)
END
diff -Nu libjwc_f-1.1/rpf_dstar.f ccp4-6.1.2/x-windows/libjwc/libjwc_f/rpf_dstar.f
--- libjwc_f-1.1/rpf_dstar.f 1999-07-09 13:39:38.000000000 +0200
+++ ccp4-6.1.2/x-windows/libjwc/libjwc_f/rpf_dstar.f 2004-06-04 12:10:59.000000000 +0200
@@ -376,7 +376,8 @@
INR_FLAG = 2
PHIW = 0.0
END IF
- ELSE
+ RETURN
+ ENDIF
C
C---- Calculate distance of edge of spot from sphere at end of rotation
Crotgen.for
@@ -418,7 +419,6 @@
INR_FLAG = 4
40 RETURN
END IF
- END IF
END IF
RETURN
END

38
dev-libs/libjwc_f/libjwc_f-1.1-r2.ebuild
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@ -1,38 +0,0 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
AUTOTOOLS_AUTORECONF=yes
inherit autotools-utils fortran-2
PATCH="612"
DESCRIPTION="Additional fortran library for ccp4"
HOMEPAGE="http://www.ccp4.ac.uk/main.html"
SRC_URI="ftp://ftp.ccp4.ac.uk/jwc/${P}.tar.gz"
SLOT="0"
LICENSE="GPL-2"
KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="static-libs"
RDEPEND="
dev-libs/libjwc_c
sci-libs/ccp4-libs"
DEPEND="${RDEPEND}"
PATCHES=( "${FILESDIR}"/${PATCH}-gentoo.patch )
src_prepare() {
rm missing || die
echo "libjwc_f_la_LIBADD = -ljwc_c -lccp4f" >> Makefile.am || die
autotools-utils_src_prepare
}
src_install() {
autotools-utils_src_install
dohtml doc/*
}

8
dev-libs/libjwc_f/metadata.xml
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@ -1,8 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
<email>sci@gentoo.org</email>
</maintainer>
</pkgmetadata>

2
dev-ruby/highline/highline-1.7.6.ebuild
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@ -17,7 +17,7 @@ HOMEPAGE="https://github.com/JEG2/highline"
IUSE=""
LICENSE="|| ( GPL-2 Ruby )"
SLOT="0"
KEYWORDS="~alpha amd64 ~hppa ~ia64 ~ppc ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~x64-solaris ~x86-solaris"
KEYWORDS="~alpha amd64 hppa ~ia64 ~ppc ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~x64-solaris ~x86-solaris"
all_ruby_prepare() {
# fix up gemspec file not to call git

4
media-video/aegisub/metadata.xml
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@ -6,6 +6,10 @@
<email>nikoli@gmx.us</email>
<name>Nikoli</name>
</maintainer>
<maintainer>
<email>itumaykin@gmail.com</email>
<name>Coacher</name>
</maintainer>
<maintainer>
<email>maksbotan@gentoo.org</email>
<name>Maxim Koltsov</name>

1
media-video/vlc/Manifest
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@ -1,3 +1,2 @@
DIST vlc-2.1.5.tar.xz 19574208 SHA256 6f6566ab6cd90d381395b7f0e401060b044cd3843e50ceb252b558a88e5d1f72 SHA512 37c6b82b4e89f4a14ed391cc677d9325a032e04bcc51a3e0d7d2ccf9e17a7a0deb90d9129e9dc3baf05a1ea9dae9c05e3177ab17a31098aafa6a2cb23388fa32 WHIRLPOOL c13098f922c7b24f3c718e88807a7dcb656af21bcf2be63d2ec7401583680658bd371e3935ba22537857861e0b1b0c4f0e693c87ed20999c679b4a04cddf7008
DIST vlc-2.2.0.tar.xz 20861760 SHA256 5e0a27e248c47da723a696420aca3a4dd15cc3ed8cc81618d3f1dc8661b25517 SHA512 41162ff2dcc35edb47721c5a0f5d1346a0bcf3099c641e317ca1ce50baadeec3eef38f10355396a82e029474f6decd1e4355bbf218cadb795ccad3ff81a585bb WHIRLPOOL 83777143ef84177fffb1e034e47012bfe4ac2355883f64d3932dcf0c3edf237d858016523a886d00934da441ae2e7b635dc4111b0fb368083d4b71c43d00f695
DIST vlc-2.2.1.tar.xz 20940288 SHA256 543d9d7e378ec0fa1ee2e7f7f5acf8c456c7d0ecc32037171523197ef3cf1fcb SHA512 91cd33ac61ebe376c24b3cc0d1dc52d7765fdccbd17e75abbbbf38f52b400e0269dc48f34ed558bff7ec1dd52c4f27098012709a3eb9fe7e8aad1069516de5de WHIRLPOOL 5c889fc5c0137f022b0b3408a5252668a1a946ed45677bb97bbbf0ec14c9411c24e8d1587e987391596774aaf7f1e4592c55b0c0f76742e84296bbfffb08e885

495
media-video/vlc/vlc-2.2.0.ebuild
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@ -1,495 +0,0 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI="5"
SCM=""
if [ "${PV%9999}" != "${PV}" ] ; then
SCM="git-r3"
if [ "${PV%.9999}" != "${PV}" ] ; then
EGIT_REPO_URI="git://git.videolan.org/vlc/vlc-${PV%.9999}.git"
else
EGIT_REPO_URI="git://git.videolan.org/vlc.git"
fi
fi
inherit eutils multilib autotools toolchain-funcs flag-o-matic virtualx ${SCM}
MY_PV="${PV/_/-}"
MY_PV="${MY_PV/-beta/-test}"
MY_P="${PN}-${MY_PV}"
DESCRIPTION="VLC media player - Video player and streamer"
HOMEPAGE="http://www.videolan.org/vlc/"
if [ "${PV%9999}" != "${PV}" ] ; then # Live ebuild
SRC_URI=""
elif [[ "${MY_P}" == "${P}" ]]; then
SRC_URI="http://download.videolan.org/pub/videolan/${PN}/${PV}/${P}.tar.xz"
else
SRC_URI="http://download.videolan.org/pub/videolan/testing/${MY_P}/${MY_P}.tar.xz"
fi
LICENSE="LGPL-2.1 GPL-2"
SLOT="0/5-8" # vlc - vlccore
if [ "${PV%9999}" = "${PV}" ] ; then
KEYWORDS="~amd64 ~arm -sparc ~x86 ~x86-fbsd"
else
KEYWORDS=""
fi
IUSE="a52 aalib alsa altivec atmo +audioqueue avahi +avcodec
+avformat bidi bluray cdda cddb chromaprint dbus dc1394 debug
directfb directx dts dvb +dvbpsi dvd dxva2 elibc_glibc +encode faad fdk
fluidsynth +ffmpeg flac fontconfig +gcrypt gme gnome gnutls
growl httpd ieee1394 jack jpeg kate kde libass libav libcaca libnotify
+libsamplerate libtiger linsys libtar lirc live lua
macosx-dialog-provider macosx-eyetv macosx-quartztext macosx-qtkit
matroska media-library cpu_flags_x86_mmx modplug mp3 mpeg
mtp musepack ncurses neon ogg omxil opencv opengl optimisememory opus
png postproc projectm pulseaudio +qt4 qt5 rdp rtsp run-as-root samba
schroedinger sdl sdl-image sftp shout sid skins speex cpu_flags_x86_sse svg +swscale
taglib theora tremor truetype twolame udev upnp vaapi v4l vcdx vdpau
vlm vnc vorbis vpx wma-fixed +X x264 x265 +xcb xml xv zvbi"
RDEPEND="
!<media-video/ffmpeg-1.2:0
dev-libs/libgpg-error:0
net-dns/libidn:0
>=sys-libs/zlib-1.2.5.1-r2:0[minizip]
virtual/libintl:0
a52? ( >=media-libs/a52dec-0.7.4-r3:0 )
aalib? ( media-libs/aalib:0 )
alsa? ( >=media-libs/alsa-lib-1.0.24:0 )
avahi? ( >=net-dns/avahi-0.6:0[dbus] )
avcodec? (
!libav? ( media-video/ffmpeg:0= )
libav? ( >=media-video/libav-11:0= )
)
avformat? (
!libav? ( media-video/ffmpeg:0= )
libav? ( media-video/libav:0= )
)
bidi? ( >=dev-libs/fribidi-0.10.4:0 )
bluray? ( >=media-libs/libbluray-0.3:0 )
cddb? ( >=media-libs/libcddb-1.2:0 )
chromaprint? ( >=media-libs/chromaprint-0.6:0 )
dbus? ( >=sys-apps/dbus-1.6:0 )
dc1394? ( >=sys-libs/libraw1394-2.0.1:0 >=media-libs/libdc1394-2.1:2 )
directfb? ( dev-libs/DirectFB:0 sys-libs/zlib:0 )
dts? ( >=media-libs/libdca-0.0.5:0 )
dvbpsi? ( >=media-libs/libdvbpsi-0.2.1:0 )
dvd? ( >=media-libs/libdvdread-4.9:0 >=media-libs/libdvdnav-4.9:0 )
elibc_glibc? ( >=sys-libs/glibc-2.8:2.2 )
faad? ( >=media-libs/faad2-2.6.1:0 )
fdk? ( media-libs/fdk-aac:0 )
flac? ( >=media-libs/libogg-1:0 >=media-libs/flac-1.1.2:0 )
fluidsynth? ( >=media-sound/fluidsynth-1.1.2:0 )
fontconfig? ( media-libs/fontconfig:1.0 )
gcrypt? ( >=dev-libs/libgcrypt-1.2.0:0= )
gme? ( media-libs/game-music-emu:0 )
gnome? ( gnome-base/gnome-vfs:2 dev-libs/glib:2 )
gnutls? ( >=net-libs/gnutls-3.0.20:0 )
ieee1394? ( >=sys-libs/libraw1394-2.0.1:0 >=sys-libs/libavc1394-0.5.3:0 )
jack? ( >=media-sound/jack-audio-connection-kit-0.99.0-r1:0 )
jpeg? ( virtual/jpeg:0 )
kate? ( >=media-libs/libkate-0.3:0 )
libass? ( >=media-libs/libass-0.9.8:0 media-libs/fontconfig:1.0 )
libcaca? ( >=media-libs/libcaca-0.99_beta14:0 )
libnotify? ( x11-libs/libnotify:0 x11-libs/gtk+:2 x11-libs/gdk-pixbuf:2 dev-libs/glib:2 )
libsamplerate? ( media-libs/libsamplerate:0 )
libtar? ( >=dev-libs/libtar-1.2.11-r3:0 )
libtiger? ( >=media-libs/libtiger-0.3.1:0 )
linsys? ( >=media-libs/zvbi-0.2.28:0 )
lirc? ( app-misc/lirc:0 )
live? ( >=media-plugins/live-2011.12.23:0 )
lua? ( >=dev-lang/lua-5.1:0 )
matroska? ( >=dev-libs/libebml-1:0= >=media-libs/libmatroska-1:0= )
modplug? ( >=media-libs/libmodplug-0.8.4:0 !~media-libs/libmodplug-0.8.8 )
mp3? ( media-libs/libmad:0 )
mpeg? ( >=media-libs/libmpeg2-0.3.2:0 )
mtp? ( >=media-libs/libmtp-1:0 )
musepack? ( >=media-sound/musepack-tools-444:0 )
ncurses? ( sys-libs/ncurses:0=[unicode] )
ogg? ( >=media-libs/libogg-1:0 )
opencv? ( >media-libs/opencv-2:0 )
opengl? ( virtual/opengl:0 >=x11-libs/libX11-1.3.99.901:0 )
opus? ( >=media-libs/opus-1.0.3:0 )
png? ( media-libs/libpng:0= sys-libs/zlib:0 )
postproc? (
!libav? ( >=media-video/ffmpeg-2.2:0= )
libav? ( media-libs/libpostproc:0= )
)
projectm? ( media-libs/libprojectm:0 media-fonts/dejavu:0 )
pulseaudio? ( >=media-sound/pulseaudio-1:0 )
qt4? ( >=dev-qt/qtgui-4.6:4 >=dev-qt/qtcore-4.6:4 )
qt5? ( >=dev-qt/qtgui-5.1:5 >=dev-qt/qtcore-5.1:5 >=dev-qt/qtwidgets-5.1:5 >=dev-qt/qtx11extras-5.1:5 )
rdp? ( >=net-misc/freerdp-1.0.1:0= )
samba? ( || ( >=net-fs/samba-3.4.6:0[smbclient] >=net-fs/samba-4:0[client] ) )
schroedinger? ( >=media-libs/schroedinger-1.0.10:0 )
sdl? ( >=media-libs/libsdl-1.2.10:0
sdl-image? ( >=media-libs/sdl-image-1.2.10:0 sys-libs/zlib:0 ) )
sftp? ( net-libs/libssh2:0 )
shout? ( >=media-libs/libshout-2.1:0 )
sid? ( media-libs/libsidplay:2 )
skins? ( x11-libs/libXext:0 x11-libs/libXpm:0 x11-libs/libXinerama:0 )
speex? ( media-libs/speex:0 )
svg? ( >=gnome-base/librsvg-2.9:2 >=x11-libs/cairo-1.13.1:0 )
swscale? (
!libav? ( media-video/ffmpeg:0= )
libav? ( media-video/libav:0= )
)
taglib? ( >=media-libs/taglib-1.9:0 sys-libs/zlib:0 )
theora? ( >=media-libs/libtheora-1.0_beta3:0 )
tremor? ( media-libs/tremor:0 )
truetype? ( media-libs/freetype:2 virtual/ttf-fonts:0
!fontconfig? ( media-fonts/dejavu:0 ) )
twolame? ( media-sound/twolame:0 )
udev? ( >=virtual/udev-142:0 )
upnp? ( net-libs/libupnp:0 )
v4l? ( media-libs/libv4l:0 )
vaapi? (
x11-libs/libva:0[X,drm]
!libav? ( media-video/ffmpeg:0=[vaapi] )
libav? ( media-video/libav:0=[vaapi] )
)
vcdx? ( >=dev-libs/libcdio-0.78.2:0 >=media-video/vcdimager-0.7.22:0 )"
# Temporarily block non-live FFMPEG versions as they break vdpau, 9999 works;
# thus we'll have to wait for a new release there.
RDEPEND="${RDEPEND}
vdpau? (
>=x11-libs/libvdpau-0.6:0
!libav? ( >=media-video/ffmpeg-2.2:0= )
libav? ( >=media-video/libav-10:0= )
)
vnc? ( >=net-libs/libvncserver-0.9.9:0 )
vorbis? ( >=media-libs/libvorbis-1.1:0 )
vpx? ( media-libs/libvpx:0 )
X? ( x11-libs/libX11:0 )
x264? ( >=media-libs/x264-0.0.20090923:0= )
x265? ( media-libs/x265:0= )
xcb? ( >=x11-libs/libxcb-1.6:0 >=x11-libs/xcb-util-0.3.4:0 >=x11-libs/xcb-util-keysyms-0.3.4:0 )
xml? ( >=dev-libs/libxml2-2.5:2 )
zvbi? ( >=media-libs/zvbi-0.2.25:0 )
"
DEPEND="${RDEPEND}
kde? ( >=kde-base/kdelibs-4:4 )
xcb? ( x11-proto/xproto:0 )
app-arch/xz-utils:0
x86? ( dev-lang/yasm:* )
amd64? ( dev-lang/yasm:* )
>=sys-devel/gettext-0.18.3:*
virtual/pkgconfig:*
"
REQUIRED_USE="
aalib? ( X )
bidi? ( truetype )
cddb? ( cdda )
dvb? ( dvbpsi )
dxva2? ( avcodec )
ffmpeg? ( avcodec avformat swscale )
fontconfig? ( truetype )
gnutls? ( gcrypt )
httpd? ( lua )
libcaca? ( X )
libtar? ( skins )
libtiger? ( kate )
qt4? ( X !qt5 )
qt5? ( X !qt4 )
sdl? ( X )
skins? ( truetype X ^^ ( qt4 qt5 ) )
vaapi? ( avcodec X )
vlm? ( encode )
xv? ( xcb )
"
S="${WORKDIR}/${MY_P}"
pkg_setup() {
if [[ "${MERGE_TYPE}" != "binary" && "$(tc-getCC)" == *"gcc"* ]] ; then
if [[ $(gcc-major-version) < 4 || ( $(gcc-major-version) == 4 && $(gcc-minor-version) < 5 ) ]] ; then
die "You need to have at least >=sys-devel/gcc-4.5 to build and/or have a working vlc, see bug #426754."
fi
fi
}
src_unpack() {
if [ "${PV%9999}" != "${PV}" ] ; then
git-r3_src_unpack
else
unpack ${A}
fi
}
src_prepare() {
# Remove unnecessary warnings about unimplemented pragmas on gcc for now.
# Need to recheck this with gcc 4.9 and every subsequent minor bump of gcc.
#
# config.h:792: warning: ignoring #pragma STDC FENV_ACCESS [-Wunknown-pragmas]
# config.h:793: warning: ignoring #pragma STDC FP_CONTRACT [-Wunknown-pragmas]
#
# https://gcc.gnu.org/c99status.html
if [[ "$(tc-getCC)" == *"gcc"* ]] ; then
sed -i 's/ifndef __FAST_MATH__/if 0/g' configure.ac || die
fi
# Bootstrap when we are on a git checkout.
if [[ "${PV%9999}" != "${PV}" ]] ; then
./bootstrap
fi
# Make it build with libtool 1.5
rm -f m4/lt* m4/libtool.m4 || die
# We are not in a real git checkout due to the absence of a .git directory.
touch src/revision.txt || die
# Fix build system mistake.
epatch "${FILESDIR}"/${PN}-2.1.0-fix-libtremor-libs.patch
# Patch up incompatibilities and reconfigure autotools.
epatch "${FILESDIR}"/${PN}-9999-libva-1.2.1-compat.patch
# Fix up broken audio when skipping using a fixed reversed bisected commit.
epatch "${FILESDIR}"/${PN}-2.1.0-TomWij-bisected-PA-broken-underflow.patch
# Bug #541928
epatch "${FILESDIR}"/${P}-fix-xcb.patch
# Bug #541678
epatch "${FILESDIR}"/qt4-select.patch
# Don't use --started-from-file when not using dbus.
if ! use dbus ; then
sed -i 's/ --started-from-file//' share/vlc.desktop.in || die
fi
epatch_user
eautoreconf
# Disable automatic running of tests.
find . -name 'Makefile.in' -exec sed -i 's/\(..*\)check-TESTS/\1/' {} \; || die
# If qtchooser is installed, it may break the build, because moc,rcc and uic binaries for wrong qt version may be used.
# Setting QT_SELECT environment variable will enforce correct binaries.
if use qt4; then
export QT_SELECT=qt4
elif use qt5; then
export QT_SELECT=qt5
fi
}
src_configure() {
# Compatibility fix for Samba 4.
use samba && append-cppflags "-I/usr/include/samba-4.0"
# We need to disable -fstack-check if use >=gcc 4.8.0.
# See bug #499996
use x86 && append-cflags $(test-flags-CC -fno-stack-check)
# Needs libresid-builder from libsidplay:2 which is in another directory...
# FIXME!
append-ldflags "-L/usr/$(get_libdir)/sidplay/builders/"
if use truetype || use projectm ; then
local dejavu="/usr/share/fonts/dejavu/"
myconf="--with-default-font=${dejavu}/DejaVuSans.ttf \
--with-default-font-family=Sans \
--with-default-monospace-font=${dejavu}/DejaVuSansMono.ttf
--with-default-monospace-font-family=Monospace"
fi
local qt_flag=""
if use qt4 ; then
qt_flag="--enable-qt=4"
elif use qt5 ; then
qt_flag="--enable-qt=5"
else
qt_flag="--disable-qt"
fi
econf \
${myconf} \
--enable-vlc \
--docdir=/usr/share/doc/${PF} \
--disable-dependency-tracking \
--disable-optimizations \
--disable-update-check \
--enable-fast-install \
--enable-screen \
$(use_enable a52) \
$(use_enable aalib aa) \
$(use_enable alsa) \
$(use_enable altivec) \
$(use_enable atmo) \
$(use_enable audioqueue) \
$(use_enable avahi bonjour) \
$(use_enable avcodec) \
$(use_enable avformat) \
$(use_enable bidi fribidi) \
$(use_enable bluray) \
$(use_enable cdda vcd) \
$(use_enable cddb libcddb) \
$(use_enable chromaprint) \
$(use_enable dbus) \
$(use_enable directfb) \
$(use_enable directx) \
$(use_enable dc1394) \
$(use_enable debug) \
$(use_enable dts dca) \
$(use_enable dvbpsi) \
$(use_enable dvd dvdread) $(use_enable dvd dvdnav) \
$(use_enable dxva2) \
$(use_enable encode sout) \
$(use_enable faad) \
$(use_enable fdk fdkaac) \
$(use_enable flac) \
$(use_enable fluidsynth) \
$(use_enable fontconfig) \
$(use_enable gcrypt libgcrypt) \
$(use_enable gme) \
$(use_enable gnome gnomevfs) \
$(use_enable gnutls) \
$(use_enable growl) \
$(use_enable httpd) \
$(use_enable ieee1394 dv1394) \
$(use_enable jack) \
$(use_enable jpeg) \
$(use_enable kate) \
$(use_with kde kde-solid) \
$(use_enable libass) \
$(use_enable libcaca caca) \
$(use_enable libnotify notify) \
$(use_enable libsamplerate samplerate) \
$(use_enable libtar) \
$(use_enable libtiger tiger) \
$(use_enable linsys) \
$(use_enable lirc) \
$(use_enable live live555) \
$(use_enable lua) \
$(use_enable macosx-dialog-provider) \
$(use_enable macosx-eyetv) \
$(use_enable macosx-qtkit) \
$(use_enable macosx-quartztext) \
$(use_enable matroska mkv) \
$(use_enable cpu_flags_x86_mmx mmx) \
$(use_enable modplug mod) \
$(use_enable mp3 mad) \
$(use_enable mpeg libmpeg2) \
$(use_enable mtp) \
$(use_enable musepack mpc) \
$(use_enable ncurses) \
$(use_enable neon) \
$(use_enable ogg) $(use_enable ogg mux_ogg) \
$(use_enable omxil) \
$(use_enable omxil omxil-vout) \
$(use_enable opencv) \
$(use_enable opengl glspectrum) \
$(use_enable opus) \
$(use_enable optimisememory optimize-memory) \
$(use_enable png) \
$(use_enable postproc) \
$(use_enable projectm) \
$(use_enable pulseaudio pulse) \
${qt_flag} \
$(use_enable rdp freerdp) \
$(use_enable rtsp realrtsp) \
$(use_enable run-as-root) \
$(use_enable samba smbclient) \
$(use_enable schroedinger) \
$(use_enable sdl) \
$(use_enable sdl-image) \
$(use_enable sid) \
$(use_enable sftp) \
$(use_enable shout) \
$(use_enable skins skins2) \
$(use_enable speex) \
$(use_enable cpu_flags_x86_sse sse) \
$(use_enable svg) \
$(use_enable svg svgdec) \
$(use_enable swscale) \
$(use_enable taglib) \
$(use_enable theora) \
$(use_enable tremor) \
$(use_enable truetype freetype) \
$(use_enable twolame) \
$(use_enable udev) \
$(use_enable upnp) \
$(use_enable v4l v4l2) \
$(use_enable vaapi libva) \
$(use_enable vcdx) \
$(use_enable vdpau) \
$(use_enable vlm) \
$(use_enable vnc) \
$(use_enable vorbis) \
$(use_enable vpx) \
$(use_enable wma-fixed) \
$(use_with X x) \
$(use_enable x264) \
$(use_enable x265) \
$(use_enable xcb) \
$(use_enable xml libxml2) \
$(use_enable xv xvideo) \
$(use_enable zvbi) $(use_enable !zvbi telx) \
--disable-asdcp \
--disable-coverage \
--disable-cprof \
--disable-crystalhd \
--disable-decklink \
--disable-gles1 \
--disable-gles2 \
--disable-goom \
--disable-kai \
--disable-kva \
--disable-maintainer-mode \
--disable-merge-ffmpeg \
--disable-mfx \
--disable-mmal-codec \
--disable-mmal-vout \
--disable-opensles \
--disable-oss \
--disable-quicktime \
--disable-rpi-omxil \
--disable-shine \
--disable-sndio \
--disable-vda \
--disable-vsxu \
--disable-wasapi
# ^ We don't have these disabled libraries in the Portage tree yet.
# _FORTIFY_SOURCE is set to 2 in config.h, which is also the default value on Gentoo.
# Other values of _FORTIFY_SOURCE may break the build (bug 523144), so definition should not be removed from config.h.
# To prevent redefinition warnings, we undefine _FORTIFY_SOURCE at the very start of config.h file
sed -i '1i#undef _FORTIFY_SOURCE' "${S}"/config.h || die
}
src_test() {
Xemake check-TESTS
}
DOCS="AUTHORS THANKS NEWS README doc/fortunes.txt doc/intf-vcd.txt"
src_install() {
default
# Punt useless libtool's .la files
find "${D}" -name '*.la' -delete
}
pkg_postinst() {
if [ "$ROOT" = "/" ] && [ -x "/usr/$(get_libdir)/vlc/vlc-cache-gen" ] ; then
einfo "Running /usr/$(get_libdir)/vlc/vlc-cache-gen on /usr/$(get_libdir)/vlc/plugins/"
"/usr/$(get_libdir)/vlc/vlc-cache-gen" -f "/usr/$(get_libdir)/vlc/plugins/"
else
ewarn "We cannot run vlc-cache-gen (most likely ROOT!=/)"
ewarn "Please run /usr/$(get_libdir)/vlc/vlc-cache-gen manually"
ewarn "If you do not do it, vlc will take a long time to load."
fi
}

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metadata/dtd/timestamp.chk
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@ -1 +1 @@
Mon, 26 Oct 2015 07:11:30 +0000
Mon, 26 Oct 2015 10:41:26 +0000

2
metadata/glsa/timestamp.chk
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Mon, 26 Oct 2015 07:11:30 +0000
Mon, 26 Oct 2015 10:41:27 +0000

4
metadata/md5-cache/app-office/sc-7.16-r1
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@ -5,8 +5,8 @@ EAPI=5
HOMEPAGE=http://ibiblio.org/pub/Linux/apps/financial/spreadsheet/
KEYWORDS=amd64 ppc sparc x86
LICENSE=public-domain
RDEPEND=>=sys-libs/ncurses-5.2 !dev-lang/stratego !<sci-chemistry/ccp4-apps-6.1.3-r4
RDEPEND=>=sys-libs/ncurses-5.2 !dev-lang/stratego
SLOT=0
SRC_URI=ftp://ibiblio.org/pub/Linux/apps/financial/spreadsheet/sc-7.16.tar.gz
_eclasses_=eutils 43da5163ba106e87d22d2e7d6d67537f multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
_md5_=d1ef5633302382f67164c5cef36537f7
_md5_=fb69f1f54130f668d0fd0c486768e621

12
metadata/md5-cache/dev-db/cdb-0.75-r4
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@ -0,0 +1,12 @@
DEFINED_PHASES=configure install prepare
DEPEND=>=sys-apps/sed-4 !dev-db/tinycdb
DESCRIPTION=Fast, reliable, simple package for creating and reading constant databases
EAPI=5
HOMEPAGE=http://cr.yp.to/cdb.html
KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~x86-freebsd ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=public-domain
RDEPEND=>=sys-apps/sed-4 !dev-db/tinycdb
SLOT=0
SRC_URI=http://cr.yp.to/cdb/cdb-0.75.tar.gz
_eclasses_=eutils 43da5163ba106e87d22d2e7d6d67537f multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
_md5_=15721345563318180b9a8f0b50573900

7
metadata/md5-cache/dev-db/wxsqlite3-3.2.1-r1
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@ -1,13 +1,12 @@
DEFINED_PHASES=configure install prepare
DEPEND=x11-libs/wxGTK:3.0[X,debug=] dev-db/sqlite:3
DEPEND=x11-libs/wxGTK:3.0[X] dev-db/sqlite:3
DESCRIPTION=C++ wrapper around the public domain SQLite 3.x database
EAPI=5
HOMEPAGE=http://wxcode.sourceforge.net/components/wxsqlite3/
IUSE=debug
KEYWORDS=~amd64 ~x86
LICENSE=wxWinLL-3
RDEPEND=x11-libs/wxGTK:3.0[X,debug=] dev-db/sqlite:3
RDEPEND=x11-libs/wxGTK:3.0[X] dev-db/sqlite:3
SLOT=0
SRC_URI=mirror://sourceforge/wxcode/wxsqlite3-3.2.1.tar.gz
_eclasses_=eutils 43da5163ba106e87d22d2e7d6d67537f flag-o-matic 85dc1eac3c64d8141374490ed64122e5 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85 wxwidgets 2a19d3cd9b18703ae9fb53123722061c
_md5_=50bc61aa824c5c3217fa57599d7208fc
_md5_=f50471b9c3ead70ca672d91d713f60da

2
metadata/md5-cache/dev-java/mojarra-2.2.12-r1
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@ -10,4 +10,4 @@ RDEPEND=>=virtual/jre-1.6 dev-java/glassfish-persistence:0 dev-java/glassfish-ej
SLOT=2.2
SRC_URI=https://maven.java.net/content/repositories/releases/org/glassfish/javax.faces/2.2.12/javax.faces-2.2.12-sources.jar
_eclasses_=eutils 43da5163ba106e87d22d2e7d6d67537f java-pkg-2 b02dc1e46b3648e467b5fbdf7857cf28 java-pkg-simple 002bfd79a6cd417a199bb3bd8704334e java-utils-2 a96633177f44ee992b3fce360d1c4f16 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
_md5_=dcc925b6850cd7f1e5f4e0106fc46886
_md5_=eec97801f9b049e73d55526b41007ff6

13
metadata/md5-cache/dev-libs/libjwc_c-1.1-r2
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@ -1,13 +0,0 @@
DEFINED_PHASES=compile configure install prepare test
DEPEND=sci-libs/ccp4-libs !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=additional c library for ccp4
EAPI=4
HOMEPAGE=http://www.ccp4.ac.uk/main.html
IUSE=static-libs
KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos
LICENSE=GPL-2
RDEPEND=sci-libs/ccp4-libs
SLOT=0
SRC_URI=ftp://ftp.ccp4.ac.uk/jwc/libjwc_c-1.1.tar.gz
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 0bf099a6e3dfeaf20a7a94504d8dd896 eutils 43da5163ba106e87d22d2e7d6d67537f libtool 7f78cd7d403808a350c9ae23f5821fb4 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
_md5_=d33640a22e2c1e580c1c9f279e1cbc45

13
metadata/md5-cache/dev-libs/libjwc_f-1.1-r2
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@ -1,13 +0,0 @@
DEFINED_PHASES=compile configure install prepare setup test
DEPEND=dev-libs/libjwc_c sci-libs/ccp4-libs !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 virtual/fortran
DESCRIPTION=Additional fortran library for ccp4
EAPI=4
HOMEPAGE=http://www.ccp4.ac.uk/main.html
IUSE=static-libs
KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos
LICENSE=GPL-2
RDEPEND=dev-libs/libjwc_c sci-libs/ccp4-libs virtual/fortran
SLOT=0
SRC_URI=ftp://ftp.ccp4.ac.uk/jwc/libjwc_f-1.1.tar.gz
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 0bf099a6e3dfeaf20a7a94504d8dd896 eutils 43da5163ba106e87d22d2e7d6d67537f fortran-2 eb14fa8f4c3b9977b8d26c2c653ca325 libtool 7f78cd7d403808a350c9ae23f5821fb4 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
_md5_=77ca4089c7c5f1837b0f279d8ef6122d

4
metadata/md5-cache/dev-ruby/highline-1.7.6
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@ -4,11 +4,11 @@ DESCRIPTION=Highline is a high-level command-line IO library for ruby
EAPI=5
HOMEPAGE=https://github.com/JEG2/highline
IUSE=elibc_FreeBSD ruby_targets_ruby19 ruby_targets_ruby20 ruby_targets_ruby21 ruby_targets_ruby22 doc test test
KEYWORDS=~alpha amd64 ~hppa ~ia64 ~ppc ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~x64-solaris ~x86-solaris
KEYWORDS=~alpha amd64 hppa ~ia64 ~ppc ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~x64-solaris ~x86-solaris
LICENSE=|| ( GPL-2 Ruby )
RDEPEND=ruby_targets_ruby19? ( dev-lang/ruby:1.9 ) ruby_targets_ruby20? ( dev-lang/ruby:2.0 ) ruby_targets_ruby21? ( dev-lang/ruby:2.1 ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby19? ( virtual/rubygems[ruby_targets_ruby19] ) ruby_targets_ruby20? ( virtual/rubygems[ruby_targets_ruby20] ) ruby_targets_ruby21? ( virtual/rubygems[ruby_targets_ruby21] ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] )
REQUIRED_USE=|| ( ruby_targets_ruby19 ruby_targets_ruby20 ruby_targets_ruby21 ruby_targets_ruby22 )
SLOT=0
SRC_URI=mirror://rubygems/highline-1.7.6.gem
_eclasses_=eutils 43da5163ba106e87d22d2e7d6d67537f java-utils-2 a96633177f44ee992b3fce360d1c4f16 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 ruby-fakegem b34b8f1debda62e461897a3f85df97e4 ruby-ng 12af15f9116c054425934f3eec054899 ruby-utils 97c910cb6b087c64260df641a9b3de0c toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
_md5_=4f100575c0e6932855e7e6e6c4799652
_md5_=7335f561b20a9453e6dc76a38aef27d8

14
metadata/md5-cache/media-video/vlc-2.2.0
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@ -1,14 +0,0 @@
DEFINED_PHASES=configure install postinst prepare setup test unpack
DEPEND=!<media-video/ffmpeg-1.2:0 dev-libs/libgpg-error:0 net-dns/libidn:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] virtual/libintl:0 a52? ( >=media-libs/a52dec-0.7.4-r3:0 ) aalib? ( media-libs/aalib:0 ) alsa? ( >=media-libs/alsa-lib-1.0.24:0 ) avahi? ( >=net-dns/avahi-0.6:0[dbus] ) avcodec? ( !libav? ( media-video/ffmpeg:0= ) libav? ( >=media-video/libav-11:0= ) ) avformat? ( !libav? ( media-video/ffmpeg:0= ) libav? ( media-video/libav:0= ) ) bidi? ( >=dev-libs/fribidi-0.10.4:0 ) bluray? ( >=media-libs/libbluray-0.3:0 ) cddb? ( >=media-libs/libcddb-1.2:0 ) chromaprint? ( >=media-libs/chromaprint-0.6:0 ) dbus? ( >=sys-apps/dbus-1.6:0 ) dc1394? ( >=sys-libs/libraw1394-2.0.1:0 >=media-libs/libdc1394-2.1:2 ) directfb? ( dev-libs/DirectFB:0 sys-libs/zlib:0 ) dts? ( >=media-libs/libdca-0.0.5:0 ) dvbpsi? ( >=media-libs/libdvbpsi-0.2.1:0 ) dvd? ( >=media-libs/libdvdread-4.9:0 >=media-libs/libdvdnav-4.9:0 ) elibc_glibc? ( >=sys-libs/glibc-2.8:2.2 ) faad? ( >=media-libs/faad2-2.6.1:0 ) fdk? ( media-libs/fdk-aac:0 ) flac? ( >=media-libs/libogg-1:0 >=media-libs/flac-1.1.2:0 ) fluidsynth? ( >=media-sound/fluidsynth-1.1.2:0 ) fontconfig? ( media-libs/fontconfig:1.0 ) gcrypt? ( >=dev-libs/libgcrypt-1.2.0:0= ) gme? ( media-libs/game-music-emu:0 ) gnome? ( gnome-base/gnome-vfs:2 dev-libs/glib:2 ) gnutls? ( >=net-libs/gnutls-3.0.20:0 ) ieee1394? ( >=sys-libs/libraw1394-2.0.1:0 >=sys-libs/libavc1394-0.5.3:0 ) jack? ( >=media-sound/jack-audio-connection-kit-0.99.0-r1:0 ) jpeg? ( virtual/jpeg:0 ) kate? ( >=media-libs/libkate-0.3:0 ) libass? ( >=media-libs/libass-0.9.8:0 media-libs/fontconfig:1.0 ) libcaca? ( >=media-libs/libcaca-0.99_beta14:0 ) libnotify? ( x11-libs/libnotify:0 x11-libs/gtk+:2 x11-libs/gdk-pixbuf:2 dev-libs/glib:2 ) libsamplerate? ( media-libs/libsamplerate:0 ) libtar? ( >=dev-libs/libtar-1.2.11-r3:0 ) libtiger? ( >=media-libs/libtiger-0.3.1:0 ) linsys? ( >=media-libs/zvbi-0.2.28:0 ) lirc? ( app-misc/lirc:0 ) live? ( >=media-plugins/live-2011.12.23:0 ) lua? ( >=dev-lang/lua-5.1:0 ) matroska? ( >=dev-libs/libebml-1:0= >=media-libs/libmatroska-1:0= ) modplug? ( >=media-libs/libmodplug-0.8.4:0 !~media-libs/libmodplug-0.8.8 ) mp3? ( media-libs/libmad:0 ) mpeg? ( >=media-libs/libmpeg2-0.3.2:0 ) mtp? ( >=media-libs/libmtp-1:0 ) musepack? ( >=media-sound/musepack-tools-444:0 ) ncurses? ( sys-libs/ncurses:0=[unicode] ) ogg? ( >=media-libs/libogg-1:0 ) opencv? ( >media-libs/opencv-2:0 ) opengl? ( virtual/opengl:0 >=x11-libs/libX11-1.3.99.901:0 ) opus? ( >=media-libs/opus-1.0.3:0 ) png? ( media-libs/libpng:0= sys-libs/zlib:0 ) postproc? ( !libav? ( >=media-video/ffmpeg-2.2:0= ) libav? ( media-libs/libpostproc:0= ) ) projectm? ( media-libs/libprojectm:0 media-fonts/dejavu:0 ) pulseaudio? ( >=media-sound/pulseaudio-1:0 ) qt4? ( >=dev-qt/qtgui-4.6:4 >=dev-qt/qtcore-4.6:4 ) qt5? ( >=dev-qt/qtgui-5.1:5 >=dev-qt/qtcore-5.1:5 >=dev-qt/qtwidgets-5.1:5 >=dev-qt/qtx11extras-5.1:5 ) rdp? ( >=net-misc/freerdp-1.0.1:0= ) samba? ( || ( >=net-fs/samba-3.4.6:0[smbclient] >=net-fs/samba-4:0[client] ) ) schroedinger? ( >=media-libs/schroedinger-1.0.10:0 ) sdl? ( >=media-libs/libsdl-1.2.10:0 sdl-image? ( >=media-libs/sdl-image-1.2.10:0 sys-libs/zlib:0 ) ) sftp? ( net-libs/libssh2:0 ) shout? ( >=media-libs/libshout-2.1:0 ) sid? ( media-libs/libsidplay:2 ) skins? ( x11-libs/libXext:0 x11-libs/libXpm:0 x11-libs/libXinerama:0 ) speex? ( media-libs/speex:0 ) svg? ( >=gnome-base/librsvg-2.9:2 >=x11-libs/cairo-1.13.1:0 ) swscale? ( !libav? ( media-video/ffmpeg:0= ) libav? ( media-video/libav:0= ) ) taglib? ( >=media-libs/taglib-1.9:0 sys-libs/zlib:0 ) theora? ( >=media-libs/libtheora-1.0_beta3:0 ) tremor? ( media-libs/tremor:0 ) truetype? ( media-libs/freetype:2 virtual/ttf-fonts:0 !fontconfig? ( media-fonts/dejavu:0 ) ) twolame? ( media-sound/twolame:0 ) udev? ( >=virtual/udev-142:0 ) upnp? ( net-libs/libupnp:0 ) v4l? ( media-libs/libv4l:0 ) vaapi? ( x11-libs/libva:0[X,drm] !libav? ( media-video/ffmpeg:0=[vaapi] ) libav? ( media-video/libav:0=[vaapi] ) ) vcdx? ( >=dev-libs/libcdio-0.78.2:0 >=media-video/vcdimager-0.7.22:0 ) vdpau? ( >=x11-libs/libvdpau-0.6:0 !libav? ( >=media-video/ffmpeg-2.2:0= ) libav? ( >=media-video/libav-10:0= ) ) vnc? ( >=net-libs/libvncserver-0.9.9:0 ) vorbis? ( >=media-libs/libvorbis-1.1:0 ) vpx? ( media-libs/libvpx:0 ) X? ( x11-libs/libX11:0 ) x264? ( >=media-libs/x264-0.0.20090923:0= ) x265? ( media-libs/x265:0= ) xcb? ( >=x11-libs/libxcb-1.6:0 >=x11-libs/xcb-util-0.3.4:0 >=x11-libs/xcb-util-keysyms-0.3.4:0 ) xml? ( >=dev-libs/libxml2-2.5:2 ) zvbi? ( >=media-libs/zvbi-0.2.25:0 ) kde? ( >=kde-base/kdelibs-4:4 ) xcb? ( x11-proto/xproto:0 ) app-arch/xz-utils:0 x86? ( dev-lang/yasm:* ) amd64? ( dev-lang/yasm:* ) >=sys-devel/gettext-0.18.3:* virtual/pkgconfig:* !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 test? ( !prefix? ( x11-base/xorg-server[xvfb] ) x11-apps/xhost )
DESCRIPTION=VLC media player - Video player and streamer
EAPI=5
HOMEPAGE=http://www.videolan.org/vlc/
IUSE=a52 aalib alsa altivec atmo +audioqueue avahi +avcodec +avformat bidi bluray cdda cddb chromaprint dbus dc1394 debug directfb directx dts dvb +dvbpsi dvd dxva2 elibc_glibc +encode faad fdk fluidsynth +ffmpeg flac fontconfig +gcrypt gme gnome gnutls growl httpd ieee1394 jack jpeg kate kde libass libav libcaca libnotify +libsamplerate libtiger linsys libtar lirc live lua macosx-dialog-provider macosx-eyetv macosx-quartztext macosx-qtkit matroska media-library cpu_flags_x86_mmx modplug mp3 mpeg mtp musepack ncurses neon ogg omxil opencv opengl optimisememory opus png postproc projectm pulseaudio +qt4 qt5 rdp rtsp run-as-root samba schroedinger sdl sdl-image sftp shout sid skins speex cpu_flags_x86_sse svg +swscale taglib theora tremor truetype twolame udev upnp vaapi v4l vcdx vdpau vlm vnc vorbis vpx wma-fixed +X x264 x265 +xcb xml xv zvbi test
KEYWORDS=~amd64 ~arm -sparc ~x86 ~x86-fbsd
LICENSE=LGPL-2.1 GPL-2
RDEPEND=!<media-video/ffmpeg-1.2:0 dev-libs/libgpg-error:0 net-dns/libidn:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] virtual/libintl:0 a52? ( >=media-libs/a52dec-0.7.4-r3:0 ) aalib? ( media-libs/aalib:0 ) alsa? ( >=media-libs/alsa-lib-1.0.24:0 ) avahi? ( >=net-dns/avahi-0.6:0[dbus] ) avcodec? ( !libav? ( media-video/ffmpeg:0= ) libav? ( >=media-video/libav-11:0= ) ) avformat? ( !libav? ( media-video/ffmpeg:0= ) libav? ( media-video/libav:0= ) ) bidi? ( >=dev-libs/fribidi-0.10.4:0 ) bluray? ( >=media-libs/libbluray-0.3:0 ) cddb? ( >=media-libs/libcddb-1.2:0 ) chromaprint? ( >=media-libs/chromaprint-0.6:0 ) dbus? ( >=sys-apps/dbus-1.6:0 ) dc1394? ( >=sys-libs/libraw1394-2.0.1:0 >=media-libs/libdc1394-2.1:2 ) directfb? ( dev-libs/DirectFB:0 sys-libs/zlib:0 ) dts? ( >=media-libs/libdca-0.0.5:0 ) dvbpsi? ( >=media-libs/libdvbpsi-0.2.1:0 ) dvd? ( >=media-libs/libdvdread-4.9:0 >=media-libs/libdvdnav-4.9:0 ) elibc_glibc? ( >=sys-libs/glibc-2.8:2.2 ) faad? ( >=media-libs/faad2-2.6.1:0 ) fdk? ( media-libs/fdk-aac:0 ) flac? ( >=media-libs/libogg-1:0 >=media-libs/flac-1.1.2:0 ) fluidsynth? ( >=media-sound/fluidsynth-1.1.2:0 ) fontconfig? ( media-libs/fontconfig:1.0 ) gcrypt? ( >=dev-libs/libgcrypt-1.2.0:0= ) gme? ( media-libs/game-music-emu:0 ) gnome? ( gnome-base/gnome-vfs:2 dev-libs/glib:2 ) gnutls? ( >=net-libs/gnutls-3.0.20:0 ) ieee1394? ( >=sys-libs/libraw1394-2.0.1:0 >=sys-libs/libavc1394-0.5.3:0 ) jack? ( >=media-sound/jack-audio-connection-kit-0.99.0-r1:0 ) jpeg? ( virtual/jpeg:0 ) kate? ( >=media-libs/libkate-0.3:0 ) libass? ( >=media-libs/libass-0.9.8:0 media-libs/fontconfig:1.0 ) libcaca? ( >=media-libs/libcaca-0.99_beta14:0 ) libnotify? ( x11-libs/libnotify:0 x11-libs/gtk+:2 x11-libs/gdk-pixbuf:2 dev-libs/glib:2 ) libsamplerate? ( media-libs/libsamplerate:0 ) libtar? ( >=dev-libs/libtar-1.2.11-r3:0 ) libtiger? ( >=media-libs/libtiger-0.3.1:0 ) linsys? ( >=media-libs/zvbi-0.2.28:0 ) lirc? ( app-misc/lirc:0 ) live? ( >=media-plugins/live-2011.12.23:0 ) lua? ( >=dev-lang/lua-5.1:0 ) matroska? ( >=dev-libs/libebml-1:0= >=media-libs/libmatroska-1:0= ) modplug? ( >=media-libs/libmodplug-0.8.4:0 !~media-libs/libmodplug-0.8.8 ) mp3? ( media-libs/libmad:0 ) mpeg? ( >=media-libs/libmpeg2-0.3.2:0 ) mtp? ( >=media-libs/libmtp-1:0 ) musepack? ( >=media-sound/musepack-tools-444:0 ) ncurses? ( sys-libs/ncurses:0=[unicode] ) ogg? ( >=media-libs/libogg-1:0 ) opencv? ( >media-libs/opencv-2:0 ) opengl? ( virtual/opengl:0 >=x11-libs/libX11-1.3.99.901:0 ) opus? ( >=media-libs/opus-1.0.3:0 ) png? ( media-libs/libpng:0= sys-libs/zlib:0 ) postproc? ( !libav? ( >=media-video/ffmpeg-2.2:0= ) libav? ( media-libs/libpostproc:0= ) ) projectm? ( media-libs/libprojectm:0 media-fonts/dejavu:0 ) pulseaudio? ( >=media-sound/pulseaudio-1:0 ) qt4? ( >=dev-qt/qtgui-4.6:4 >=dev-qt/qtcore-4.6:4 ) qt5? ( >=dev-qt/qtgui-5.1:5 >=dev-qt/qtcore-5.1:5 >=dev-qt/qtwidgets-5.1:5 >=dev-qt/qtx11extras-5.1:5 ) rdp? ( >=net-misc/freerdp-1.0.1:0= ) samba? ( || ( >=net-fs/samba-3.4.6:0[smbclient] >=net-fs/samba-4:0[client] ) ) schroedinger? ( >=media-libs/schroedinger-1.0.10:0 ) sdl? ( >=media-libs/libsdl-1.2.10:0 sdl-image? ( >=media-libs/sdl-image-1.2.10:0 sys-libs/zlib:0 ) ) sftp? ( net-libs/libssh2:0 ) shout? ( >=media-libs/libshout-2.1:0 ) sid? ( media-libs/libsidplay:2 ) skins? ( x11-libs/libXext:0 x11-libs/libXpm:0 x11-libs/libXinerama:0 ) speex? ( media-libs/speex:0 ) svg? ( >=gnome-base/librsvg-2.9:2 >=x11-libs/cairo-1.13.1:0 ) swscale? ( !libav? ( media-video/ffmpeg:0= ) libav? ( media-video/libav:0= ) ) taglib? ( >=media-libs/taglib-1.9:0 sys-libs/zlib:0 ) theora? ( >=media-libs/libtheora-1.0_beta3:0 ) tremor? ( media-libs/tremor:0 ) truetype? ( media-libs/freetype:2 virtual/ttf-fonts:0 !fontconfig? ( media-fonts/dejavu:0 ) ) twolame? ( media-sound/twolame:0 ) udev? ( >=virtual/udev-142:0 ) upnp? ( net-libs/libupnp:0 ) v4l? ( media-libs/libv4l:0 ) vaapi? ( x11-libs/libva:0[X,drm] !libav? ( media-video/ffmpeg:0=[vaapi] ) libav? ( media-video/libav:0=[vaapi] ) ) vcdx? ( >=dev-libs/libcdio-0.78.2:0 >=media-video/vcdimager-0.7.22:0 ) vdpau? ( >=x11-libs/libvdpau-0.6:0 !libav? ( >=media-video/ffmpeg-2.2:0= ) libav? ( >=media-video/libav-10:0= ) ) vnc? ( >=net-libs/libvncserver-0.9.9:0 ) vorbis? ( >=media-libs/libvorbis-1.1:0 ) vpx? ( media-libs/libvpx:0 ) X? ( x11-libs/libX11:0 ) x264? ( >=media-libs/x264-0.0.20090923:0= ) x265? ( media-libs/x265:0= ) xcb? ( >=x11-libs/libxcb-1.6:0 >=x11-libs/xcb-util-0.3.4:0 >=x11-libs/xcb-util-keysyms-0.3.4:0 ) xml? ( >=dev-libs/libxml2-2.5:2 ) zvbi? ( >=media-libs/zvbi-0.2.25:0 )
REQUIRED_USE=aalib? ( X ) bidi? ( truetype ) cddb? ( cdda ) dvb? ( dvbpsi ) dxva2? ( avcodec ) ffmpeg? ( avcodec avformat swscale ) fontconfig? ( truetype ) gnutls? ( gcrypt ) httpd? ( lua ) libcaca? ( X ) libtar? ( skins ) libtiger? ( kate ) qt4? ( X !qt5 ) qt5? ( X !qt4 ) sdl? ( X ) skins? ( truetype X ^^ ( qt4 qt5 ) ) vaapi? ( avcodec X ) vlm? ( encode ) xv? ( xcb )
SLOT=0/5-8
SRC_URI=http://download.videolan.org/pub/videolan/vlc/2.2.0/vlc-2.2.0.tar.xz
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils 43da5163ba106e87d22d2e7d6d67537f flag-o-matic 85dc1eac3c64d8141374490ed64122e5 libtool 7f78cd7d403808a350c9ae23f5821fb4 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85 virtualx 7d550983f9b6adb3e7091f4090ddae2f
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metadata/md5-cache/sci-biology/biopython-1.66
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DEFINED_PHASES=compile configure install postinst prepare test
DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_pypy? ( virtual/pypy:0= ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_pypy(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_pypy(-)]
DESCRIPTION=Python modules for computational molecular biology
EAPI=5
HOMEPAGE=http://www.biopython.org/ https://pypi.python.org/pypi/biopython/
IUSE=python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_pypy
KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
LICENSE=HPND
RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_3(-)?,-python_single_target_python3_3(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-)] media-gfx/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_3? ( >=dev-lang/python-3.3.2-r2:3.3 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_pypy? ( virtual/pypy:0= ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_3(-)?,python_targets_python3_4(-)?,python_targets_pypy(-)?,-python_single_target_python2_7(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_pypy(-)]
REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_3 python_targets_python3_4 python_targets_pypy )
SLOT=0
SRC_URI=http://www.biopython.org/DIST/biopython-1.66.tar.gz
_eclasses_=distutils-r1 46506dd0dd992b3c89b0d00daabfd86c eutils 43da5163ba106e87d22d2e7d6d67537f multibuild ce2c2ede0c914b77f5dfc4e2ff2d0249 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 multiprocessing d769539d9bace6eaca30af23bc2b4dde python-r1 32b376cbb100a3a8083b3a0de023e117 python-utils-r1 9c405693f1f355a718700c5cffffd9e5 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
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metadata/md5-cache/sci-chemistry/arp-warp-bin-7.5
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DEFINED_PHASES=install nofetch postinst prepare
DESCRIPTION=Improvement and interpretation of crystallographic electron density maps
EAPI=5
HOMEPAGE=http://www.embl-hamburg.de/ARP/
IUSE=cpu_flags_x86_sse2
KEYWORDS=-* amd64 x86 ~amd64-linux ~x86-linux
LICENSE=ArpWarp
RDEPEND=app-shells/tcsh sci-chemistry/refmac virtual/awk virtual/jre virtual/opengl x11-libs/libX11
REQUIRED_USE=cpu_flags_x86_sse2
RESTRICT=fetch
SLOT=0
SRC_URI=arp_warp_7.5.tar.gz
_eclasses_=eutils 43da5163ba106e87d22d2e7d6d67537f multilib df4e4d5cfd3d137d0c248e1991c0e4d6 prefix e7f2b9c6e57342e5d25eac22fce23062 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
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metadata/md5-cache/sci-chemistry/balbes-1.0.0_p100317-r2
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DEFINED_PHASES=compile install postinst postrm prepare setup unpack
DEPEND=sci-libs/ccp4-libs virtual/fortran =dev-lang/python-2*
DESCRIPTION=Automated molecular replacement (MR) pipeline
EAPI=3
HOMEPAGE=http://www.ysbl.york.ac.uk/~fei/balbes/index.html
KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux
LICENSE=ccp4
RDEPEND=sci-libs/ccp4-libs ~sci-libs/balbes-db-6.1.3 !<=sci-chemistry/ccp4-apps-6.1.3-r1 virtual/fortran =dev-lang/python-2*
SLOT=0
SRC_URI=mirror://gentoo/balbes-1.0.0_p100317.tar.gz ftp://ftp.ccp4.ac.uk/ccp4/6.1.3/ccp4-6.1.3-core-src.tar.gz
_eclasses_=eutils 43da5163ba106e87d22d2e7d6d67537f fortran-2 eb14fa8f4c3b9977b8d26c2c653ca325 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 python 06d7be3e54573292f012e3cc433d8297 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
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metadata/md5-cache/sys-apps/coreutils-8.21
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metadata/md5-cache/sys-apps/coreutils-8.22
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metadata/md5-cache/sys-apps/coreutils-8.22-r1
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metadata/md5-cache/sys-apps/coreutils-8.23
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DEFINED_PHASES=configure install postinst prepare test
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metadata/md5-cache/sys-apps/coreutils-8.24
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DEFINED_PHASES=configure install postinst prepare test
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metadata/md5-cache/sys-kernel/git-sources-4.3_rc7
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metadata/md5-cache/www-client/qutebrowser-0.4.1
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SLOT=0
SRC_URI=https://github.com/The-Compiler/qutebrowser/releases/download/v0.4.1/qutebrowser-0.4.1.tar.gz -> qutebrowser-0.4.1.tar.gz
_eclasses_=distutils-r1 46506dd0dd992b3c89b0d00daabfd86c eutils 43da5163ba106e87d22d2e7d6d67537f fdo-mime 92d07846ea8ea54172f8c0112a47ae3d multibuild ce2c2ede0c914b77f5dfc4e2ff2d0249 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 multiprocessing d769539d9bace6eaca30af23bc2b4dde python-r1 32b376cbb100a3a8083b3a0de023e117 python-utils-r1 9c405693f1f355a718700c5cffffd9e5 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
_md5_=3664a0aaf81c9dd7f35167737bc74b24

13
metadata/md5-cache/x11-libs/libxdl_view-4.2-r2
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@ -1,13 +0,0 @@
DEFINED_PHASES=compile configure install prepare test
DEPEND=dev-libs/libjwc_c x11-libs/libXt !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=An X-Windows Based Toolkit
EAPI=4
HOMEPAGE=http://www.ccp4.ac.uk/dist/x-windows/xdl_view/doc/xdl_view_top.html
IUSE=static-libs
KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
LICENSE=GPL-2
RDEPEND=dev-libs/libjwc_c x11-libs/libXt
SLOT=0
SRC_URI=ftp://ftp.ccp4.ac.uk/jwc/libxdl_view-4.2.tar.gz
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 0bf099a6e3dfeaf20a7a94504d8dd896 eutils 43da5163ba106e87d22d2e7d6d67537f libtool 7f78cd7d403808a350c9ae23f5821fb4 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
_md5_=770764b666bc2d79efc7037fa556bc3b

4
metadata/md5-cache/x11-misc/xscreensaver-5.34
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@ -4,10 +4,10 @@ DESCRIPTION=A modular screen saver and locker for the X Window System
EAPI=5
HOMEPAGE=http://www.jwz.org/xscreensaver/
IUSE=gdm jpeg new-login opengl pam +perl selinux suid xinerama
KEYWORDS=~alpha ~amd64 ~arm ~arm64 hppa ~ia64 ~mips ~ppc ppc64 ~sh ~sparc ~x86 ~x86-fbsd ~x86-freebsd ~x86-interix ~amd64-linux ~x86-linux ~x64-solaris ~x86-solaris
KEYWORDS=~alpha amd64 ~arm ~arm64 hppa ~ia64 ~mips ~ppc ppc64 ~sh ~sparc ~x86 ~x86-fbsd ~x86-freebsd ~x86-interix ~amd64-linux ~x86-linux ~x64-solaris ~x86-solaris
LICENSE=BSD
RDEPEND=>=gnome-base/libglade-2 dev-libs/libxml2 media-libs/netpbm x11-apps/appres x11-apps/xwininfo x11-libs/gtk+:2 x11-libs/libX11 x11-libs/libXext x11-libs/libXi x11-libs/libXmu x11-libs/libXrandr x11-libs/libXt x11-libs/libXxf86misc x11-libs/libXxf86vm jpeg? ( virtual/jpeg:0 ) new-login? ( gdm? ( gnome-base/gdm ) !gdm? ( || ( x11-misc/lightdm kde-base/kdm ) ) ) opengl? ( virtual/glu virtual/opengl ) pam? ( virtual/pam ) xinerama? ( x11-libs/libXinerama ) perl? ( dev-lang/perl dev-perl/libwww-perl virtual/perl-Digest-MD5 ) selinux? ( sec-policy/selinux-xscreensaver )
SLOT=0
SRC_URI=http://www.jwz.org/xscreensaver/xscreensaver-5.34.tar.gz
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils 43da5163ba106e87d22d2e7d6d67537f flag-o-matic 85dc1eac3c64d8141374490ed64122e5 libtool 7f78cd7d403808a350c9ae23f5821fb4 multilib df4e4d5cfd3d137d0c248e1991c0e4d6 pam 3ecd5b75e39b0bb05a3183c08fcdfdb4 toolchain-funcs 7a212e5e01adfa4805c9978366e6ee85
_md5_=a87cb3cc9f09f20f17590709c9888cc2
_md5_=0df235b69883fcab3ccfef367c67add7

2
metadata/news/timestamp.chk
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@ -1 +1 @@
Mon, 26 Oct 2015 07:11:30 +0000
Mon, 26 Oct 2015 10:41:27 +0000

2
metadata/timestamp
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@ -1 +1 @@
Mon Oct 26 07:11:30 UTC 2015
Mon Oct 26 10:41:26 UTC 2015

2
metadata/timestamp.chk
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@ -1 +1 @@
Mon, 26 Oct 2015 07:30:01 +0000
Mon, 26 Oct 2015 11:00:01 +0000

2
metadata/timestamp.x
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@ -1 +1 @@
1445843402 Mon 26 Oct 2015 07:10:02 AM UTC
1445856001 Mon 26 Oct 2015 10:40:01 AM UTC

1
profiles/arch/powerpc/package.use.force
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@ -15,5 +15,4 @@ net-p2p/sancho-bin java
# sci-chemistry/arp-warp-bin is not available for ppc
# sci-chemistry/solve-resolve-bin is not available for ppc
# sci-chemistry/cns is not available for ppc
sci-chemistry/oasis minimal
sci-libs/cctbx minimal

6
profiles/arch/powerpc/package.use.mask
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@ -291,12 +291,6 @@ mail-client/claws-mail pda
# No media-sound/lilypond here, yet (bug #356069)
app-text/asciidoc test
# Kacper Kowalik <xarthisius@gentoo.org> (16 Jan 2011)
# bug 303931
# dev-lang/icc is not available for ppc
# sci-chemistry/arp-warp-bin is not available for ppc
sci-chemistry/ccp4 arpwarp
# Justin Lecher <jlec@gentoo.org> (01 Nov 2010)
# Deps not Keyworded
sci-chemistry/apbs fetk

3
profiles/hardened/linux/package.mask
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@ -31,3 +31,6 @@ app-crypt/hmaccalc
# due to C99 struct init requirement by hardened kernels,
# see bug 540196 comment 9.
net-fs/openafs-kernel
# Crashes immediately on start. bug 560666
=www-client/qutebrowser-0.4.1

35
profiles/package.mask
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@ -241,41 +241,6 @@ net-firewall/shorewall6-lite
=app-emulation/vmware-workstation-9*
=app-emulation/vmware-modules-271*
# Justin Lecher <jlec@gentoo.org> (15 Sep 2015)
# Outdated and multiple bugs
# Use upstream installer for up to version
dev-libs/libjwc_c
dev-libs/libjwc_f
sci-chemistry/arp-warp-bin
sci-chemistry/balbes
sci-chemistry/ccp4
sci-chemistry/ccp4-apps
sci-chemistry/ccp4i
<sci-chemistry/coot-0.8
sci-chemistry/imosflm
sci-chemistry/makecif
sci-chemistry/molrep
sci-chemistry/mosflm
sci-chemistry/mrbump
sci-chemistry/oasis
sci-chemistry/pdb-extract
sci-chemistry/pointless
sci-chemistry/refmac
sci-chemistry/scala
sci-chemistry/sfcheck
sci-chemistry/solve-resolve-bin
sci-chemistry/xdsi
sci-chemistry/xia2
sci-libs/balbes-db
sci-libs/cctbx
<sci-libs/coot-data-3
sci-libs/ccp4-libs
<=sci-libs/clipper-2.1_p100511-r1
<sci-libs/mmdb-1.25.5-r1:0
<sci-libs/monomer-db-5.41
<sci-libs/ssm-1.4
x11-libs/libxdl_view
# Michał Górny <mgorny@gentoo.org> (09 Sep 2015)
# Package to be used with gentoo-x86 CVS, so pretty much defunct now.
# Removal in 30 days. Bug #560056.

3
profiles/use.local.desc
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@ -6578,8 +6578,6 @@ sci-chemistry/avogadro:glsl - Enable glsl features via GLEW.
sci-chemistry/ball:cuda - Include cuda support
sci-chemistry/ball:sql - Include SQL database support
sci-chemistry/ball:webkit - Uses dev-qt/qtwebkit for drawing
sci-chemistry/ccp4:arpwarp - Add binary arp-warp for molecular replacement
sci-chemistry/ccp4:balbes - Install sci-chemistry/balbes
sci-chemistry/chemtool:emf - EMF export support
sci-chemistry/cns:aria - Support patch for sci-chemistry/aria
sci-chemistry/eden:double-precision - More precise calculations at the expense of speed
@ -6603,7 +6601,6 @@ sci-chemistry/molequeue:client - Build the client application
sci-chemistry/molequeue:server - Build the serve application
sci-chemistry/molequeue:zeromq - Build with net-libs/zeromq support
sci-chemistry/mopac7:gmxmopac7 - Add support library for gromacs
sci-chemistry/oasis:minimal - Restricts functionality on free software
sci-chemistry/pdb2pqr:opal - Add web interface via opal
sci-chemistry/pdb2pqr:pdb2pka - Install experimental pdb2pka interface
sci-chemistry/pymol:apbs - Install the apbs plugin

1
sci-biology/biopython/Manifest
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@ -1 +1,2 @@
DIST biopython-1.65.tar.gz 12641342 SHA256 463cc81db84e9bfcdfb15629511c81ed556a6c0287e670dbfe80f03c65d2a88e SHA512 2a9c6a89d0279374c243938d13bfdd6f2b124a08afbfb0c262e1e4827c48a141fb9941f4cdb960f76b523f0ac152095a8c6ea566d9b469ce9daf8a7e7993f7af WHIRLPOOL 40757938c0eb7e30c9609ef5aa2d397fa21ad92cd20c9b6300cde1b381a0e6c21e4ebb7f4d25bf02651789437d7d86341154b907ccc0007759c17939f2e29da2
DIST biopython-1.66.tar.gz 13724754 SHA256 5178ea3b343b1d8710f39205386093e5369ed653aa020e1b0c4b7622a59346c1 SHA512 6bb01f1058728f957527447df82ffbb9027e74564e81c8308b3404d033a0f12fef50da05b343bd4c4eae98508931eedc9c4bc23b2efdf36bbb49f1557fa52d71 WHIRLPOOL 0cfe3f4829ec72afa466b17cf6745cc334105713ebeeb06019e2df94acc1289aeb07a7bba70a50afeae00de90c48d2455a1af8cf26f916ceb4c0ab92a4a05fbd

56
sci-biology/biopython/biopython-1.66.ebuild
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@ -0,0 +1,56 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
PYTHON_COMPAT=( python2_7 python3_{3,4} pypy )
inherit distutils-r1 eutils
DESCRIPTION="Python modules for computational molecular biology"
HOMEPAGE="http://www.biopython.org/ https://pypi.python.org/pypi/biopython/"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
LICENSE="HPND"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE=""
RDEPEND="
dev-python/matplotlib[$(python_gen_usedep 'python*')]
dev-python/networkx[$(python_gen_usedep 'python*')]
dev-python/numpy[$(python_gen_usedep 'python*')]
dev-python/rdflib[$(python_gen_usedep 'python*')]
dev-python/pygraphviz[$(python_gen_usedep 'python2*')]
dev-python/reportlab[$(python_gen_usedep 'python*')]
media-gfx/pydot[$(python_gen_usedep 'python2*')]
"
DEPEND="${RDEPEND}
sys-devel/flex"
DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
python_test() {
distutils_install_for_testing
cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die
cd "${TEST_DIR}"/lib/Tests || die
rm ./test_BioSQL_psycopg2.py ./test_BioSQL_MySQLdb.py ./test_BioSQL_mysql_connector.py || die
${PYTHON} run_tests.py --offline --verbose || die
}
python_install_all() {
distutils-r1_python_install_all
dodir /usr/share/${PN}
cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
}
pkg_postinst() {
elog "For database support you need to install:"
optfeature "MySQL" dev-python/mysql-python
optfeature "PostGreSQL" dev-python/psycopg
echo
elog "Some applications need extra packages:"
optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss
}

1
sci-chemistry/arp-warp-bin/Manifest
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@ -1 +0,0 @@
DIST arp_warp_7.5.tar.gz 198643246 SHA256 d16fc6775905e56e5159f4a658f654b98d94f78143a2537ba67bffaed7ef1ad8 SHA512 351ed4bad863bac63005d128c693b7dde60c03ca5e8bd449ea602646f7f856c022070e542bcacae2793fbde88d67e7b5639bedeec55eeb191017a2ec19d03768 WHIRLPOOL d4ea42179a8a406508c82320567dc39ce419a2cba8b9e6ed05739dbbf0c9aba072b720c56987c4c94806ba2772f9c8787bde898f7c76543cc4702f00b7f16532

81
sci-chemistry/arp-warp-bin/arp-warp-bin-7.5.ebuild
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@ -1,81 +0,0 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit eutils prefix
MY_P="arp_warp_${PV}"
DESCRIPTION="Improvement and interpretation of crystallographic electron density maps"
SRC_URI="${MY_P}.tar.gz"
HOMEPAGE="http://www.embl-hamburg.de/ARP/"
LICENSE="ArpWarp"
SLOT="0"
KEYWORDS="-* amd64 x86 ~amd64-linux ~x86-linux"
IUSE="cpu_flags_x86_sse2"
REQUIRED_USE="cpu_flags_x86_sse2"
RDEPEND="
app-shells/tcsh
sci-chemistry/refmac
virtual/awk
virtual/jre
virtual/opengl
x11-libs/libX11"
DEPEND=""
RESTRICT="fetch"
S="${WORKDIR}/${MY_P}"
QA_PREBUILT="opt/arp-warp-bin/bin/*"
pkg_nofetch(){
elog "Fill out the form at http://www.embl-hamburg.de/ARP/"
elog "and place ${A} in ${DISTDIR}"
}
src_prepare() {
epatch "${FILESDIR}"/7.3-setup.patch
eprefixify "${S}"/share/arpwarp_setup_base.*
sed -e '/exit/d' -i "${S}"/share/arpwarp_setup_base.* || die
}
src_install(){
m_type=$(uname -m)
os_type=$(uname)
exeinto /opt/${PN}/bin/bin-${m_type}-${os_type}
doexe "${S}"/bin/bin-${m_type}-${os_type}/* "${S}"/share/*{pl,sh}
insinto /opt/${PN}/bin/bin-${m_type}-${os_type}
doins "${S}"/share/*{gif,bmp,XYZ,bash,csh,dat,lib,tbl,llh,prm}
insinto /etc/profile.d/
newins "${S}"/share/arpwarp_setup_base.csh 90arpwarp_setup.csh
newins "${S}"/share/arpwarp_setup_base.bash 90arpwarp_setup.sh
dodoc "${S}"/README manual/UserGuide${PV}.pdf
dohtml -r "${S}"/manual/html/*
}
pkg_postinst(){
testcommand=$(echo 3 2 | awk '{printf"%3.1f",$1/$2}')
if [ $testcommand == "1,5" ];then
ewarn "*** ERROR ***"
ewarn " 3/2=" $testcommand
ewarn "Invalid decimal separator (must be ".")"
ewarn "You need to set this correctly!!!"
echo
ewarn "One way of setting the decimal separator is:"
ewarn "setenv LC_NUMERIC C' in your .cshrc file"
ewarn "\tor"
ewarn "export LC_NUMERIC=C' in your .bashrc file"
ewarn "Otherwise please consult your system manager"
fi
}

30
sci-chemistry/arp-warp-bin/files/7.3-setup.patch
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@ -1,30 +0,0 @@
diff --git a/share/arpwarp_setup_base.bash b/share/arpwarp_setup_base.bash
index 29e769c..0b8a51e 100644
--- a/share/arpwarp_setup_base.bash
+++ b/share/arpwarp_setup_base.bash
@@ -13,10 +13,10 @@ else
identifier=${nameprocessor}'-'${namesystem}
fi
#
-arpwarphome="$1X"
+arpwarphome="@GENTOO_PORTAGE_EPREFIX@/opt/arp-warp-bin"
#
export warpbin=${arpwarphome}/bin/bin-${identifier}
-export warpdoc=${arpwarphome}/manual
+export warpdoc=@GENTOO_PORTAGE_EPREFIX@/usr/share/doc/arp-warp-bin-7.1/html/
export PATH=${warpbin}:${PATH}
#
# Checks for existence of $warpbin directory
diff --git a/share/arpwarp_setup_base.csh b/share/arpwarp_setup_base.csh
index 41b11e9..a4edcff 100644
--- a/share/arpwarp_setup_base.csh
+++ b/share/arpwarp_setup_base.csh
@@ -13,7 +13,7 @@ else
set identifier = ${nameprocessor}'-'${namesystem}
endif
#
-set arpwarphome = '$1X'
+set arpwarphome = '@GENTOO_PORTAGE_EPREFIX@/opt/arp-warp-bin'
#
setenv warpbin ${arpwarphome}/bin/bin-${identifier}
#

5
sci-chemistry/arp-warp-bin/metadata.xml
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@ -1,5 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
</pkgmetadata>

2
sci-chemistry/balbes/Manifest
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@ -1,2 +0,0 @@
DIST balbes-1.0.0_p100317.tar.gz 506464 SHA256 c5bf6c2086e1a3d7d380e5501c0cffdb91cbf77c74d2951dd345273f21921d0c SHA512 0029e459877113de212574daec8532f0d225e96772c6a777d34af94e5f11c1253ca941266e68da79e0a5c5a96416a824f76c6f1d8652d9a60a34756989cae41e WHIRLPOOL 9024490eea43ef526f00aff9f2045e2689dd6d9e7575c9fd3de2a23fc4af3ad784660df4c78c9aa6380df1dac9fbf46c8b6be105a3094761ebdd43c5cb541beb
DIST ccp4-6.1.3-core-src.tar.gz 242134076 SHA256 1e529c660e7f390ec0feca9d45caa00a2813d23156c10a2747c427117293c324 SHA512 413eba806107ebcdbd93e9122275463709133d9b2a9ce44ae57a6c2350465a47ba66ad9875237aead74f5d422c0104f58f728ab37a757b10d82cde92af444c20 WHIRLPOOL faebf8ee7920013bc3d0e83565207dca1f31ba0b5c92fe1eae4b740f70ff2031d95787fa0d545b09c853d25657c08973527e43de02fddc086988123ca2a6339c

79
sci-chemistry/balbes/balbes-1.0.0_p100317-r2.ebuild
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@ -1,79 +0,0 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=3
CCP4VER="6.1.3"
PYTHON_DEPEND="2"
inherit eutils fortran-2 python toolchain-funcs
DESCRIPTION="Automated molecular replacement (MR) pipeline"
HOMEPAGE="http://www.ysbl.york.ac.uk/~fei/balbes/index.html"
SRC_URI="
mirror://gentoo/${P}.tar.gz
ftp://ftp.ccp4.ac.uk/ccp4/${CCP4VER}/ccp4-${CCP4VER}-core-src.tar.gz"
SLOT="0"
LICENSE="ccp4"
KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
IUSE=""
# bundled PyXML is modified and cannot be replaced
COMMON_DEPEND="sci-libs/ccp4-libs"
RDEPEND="${COMMON_DEPEND}
~sci-libs/balbes-db-${CCP4VER}
!<=sci-chemistry/ccp4-apps-6.1.3-r1"
DEPEND="${COMMON_DEPEND}"
S="${WORKDIR}"/src
pkg_setup() {
fortran-2_pkg_setup
python_set_active_version 2
}
src_unpack() {
unpack ${P}.tar.gz
tar xvzf "${DISTDIR}"/ccp4-${CCP4VER}-core-src.tar.gz \
ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py \
ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/PyXML-0.8.4
python_convert_shebangs 2 "${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py/balbes
}
src_prepare() {
mkdir "${WORKDIR}"/bin || die
epatch "${FILESDIR}"/${PV}-makefile.patch
cd "${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/
epatch "${FILESDIR}"/pyxml-0.8.4-python-2.6.patch
}
src_compile() {
emake \
BLANC_FORT="$(tc-getFC) ${FFLAGS}" || die
cd "${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/PyXML-0.8.4
find build -delete
$(PYTHON) setup.py build
find xml/xslt test -delete
}
src_install() {
insinto /usr/share/balbes/BALBES_0.0.1/
doins -r \
"${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py \
"${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/PyXML-0.8.4 || die
dobin \
"${WORKDIR}"/bin/* \
"${WORKDIR}"/ccp4-${CCP4VER}/share/balbes/BALBES_0.0.1/bin_py/balbes \
|| die
}
pkg_postinst() {
python_mod_optimize /usr/share/balbes/BALBES_0.0.1/{bin_py,PyXML-0.8.4}
}
pkg_postrm() {
python_mod_cleanup /usr/share/balbes/BALBES_0.0.1/{bin_py,PyXML-0.8.4}
}

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