77 lines
2 KiB
Bash
77 lines
2 KiB
Bash
# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=2
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inherit eutils toolchain-funcs
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DESCRIPTION="Tools for DNA/RNA sequence database handling and phylogenetic analysis"
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HOMEPAGE="http://www.arb-home.de/"
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SRC_URI="
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http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz
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mirror://gentoo/${P}-glibc2.10.patch.bz2
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https://dev.gentoo.org/~jlec/${P}-linker.patch.bz2"
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LICENSE="arb"
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SLOT="0"
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IUSE="+opengl"
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KEYWORDS="~amd64 ~x86"
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DEPEND="
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app-text/sablotron
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media-libs/libpng
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media-libs/tiff
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www-client/lynx
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x11-libs/libXaw
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x11-libs/libXpm
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x11-libs/motif:0
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opengl? (
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media-libs/glew
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media-libs/freeglut
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|| (
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media-libs/mesa[motif]
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( media-libs/mesa x11-libs/libGLw ) ) )"
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RDEPEND="${DEPEND}
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sci-visualization/gnuplot"
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# Recommended: libmotif3 gv xfig xterm treetool java
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src_unpack() {
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unpack ${A}
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mv arbsrc* ${P}
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}
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src_prepare() {
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epatch \
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"${WORKDIR}"/${P}-glibc2.10.patch\
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"${WORKDIR}"/${P}-linker.patch \
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"${FILESDIR}"/${PV}-libs.patch \
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"${FILESDIR}"/${PV}-bfr-overflow.patch
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sed -i \
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-e 's/all: checks/all:/' \
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-e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \
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-e "s/GPP:=.*/GPP=$(tc-getCXX) ${CXXFLAGS}/" \
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-e 's/--export-dynamic/-Wl,--export-dynamic/g' \
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"${S}/Makefile" || die
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cp config.makefile.template config.makefile
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sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die
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use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile
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use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile
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emake ARBHOME="${S}" links || die
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}
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src_compile() {
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emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile || die
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use amd64 && mv arb.tgz arb.64.gentoo.tgz
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use x86 && mv arb.tgz arb.32.gentoo.tgz
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ln -s arb.*.tgz arb.tgz || die
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}
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src_install() {
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ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die
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cat <<- EOF > "${S}/99${PN}"
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ARBHOME=/opt/arb
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PATH=/opt/arb/bin
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LD_LIBRARY_PATH=/opt/arb/lib
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EOF
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doenvd "${S}/99${PN}" || die
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}
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