44 lines
888 B
Bash
44 lines
888 B
Bash
# Copyright 1999-2015 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Id$
|
|
|
|
EAPI=5
|
|
|
|
inherit eutils flag-o-matic fortran-2 toolchain-funcs
|
|
|
|
DESCRIPTION="A suite of algorithms for ecological bioinformatics"
|
|
HOMEPAGE="http://www.mothur.org/"
|
|
SRC_URI="http://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip"
|
|
|
|
LICENSE="GPL-3"
|
|
SLOT="0"
|
|
IUSE="mpi +readline"
|
|
KEYWORDS="amd64 x86"
|
|
|
|
RDEPEND="
|
|
sci-biology/uchime
|
|
mpi? ( virtual/mpi )"
|
|
DEPEND="${RDEPEND}
|
|
app-arch/unzip"
|
|
|
|
S=${WORKDIR}/Mothur.source
|
|
|
|
pkg_setup() {
|
|
fortran-2_pkg_setup
|
|
use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX)
|
|
use amd64 && append-cppflags -DBIT_VERSION
|
|
}
|
|
|
|
src_prepare() {
|
|
epatch \
|
|
"${FILESDIR}"/${P}-makefile.patch \
|
|
"${FILESDIR}"/${P}-overflows.patch
|
|
}
|
|
|
|
src_compile() {
|
|
emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline)
|
|
}
|
|
|
|
src_install() {
|
|
dobin ${PN}
|
|
}
|