gentoo-overlay/sci-biology/bedtools/bedtools-2.13.3.ebuild

# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/bedtools-2.13.3.ebuild,v 1.1 2011/10/09 04:01:53 weaver Exp $

EAPI=4

inherit flag-o-matic

DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats"
HOMEPAGE="http://code.google.com/p/bedtools/"
SRC_URI="http://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz"

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""

S="${WORKDIR}/BEDTools-Version-${PV}"

src_prepare() {
	filter-ldflags -Wl,--as-needed
	sed -i -e '1 a SHELL := /bin/bash -e' \
		-e '/export CXXFLAGS/ d' \
		-e '/export CXX/ d' \
		Makefile || die
}

src_install(){
	dobin bin/*
	dodoc README* RELEASE_HISTORY
	newbin bin/overlap bt_ovelap
}