47 lines
964 B
Bash
47 lines
964 B
Bash
# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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inherit toolchain-funcs
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DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
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HOMEPAGE="http://www.repeatmasker.org/RepeatModeler.html"
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SRC_URI="http://www.repeatmasker.org/${P^^}.tar.gz"
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LICENSE="GPL-2"
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SLOT="0"
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IUSE="examples"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="dev-lang/perl"
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S=${WORKDIR}/${P^^}
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PATCHES=(
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"${FILESDIR}"/${PN}-1.08-buffer-overflow.patch
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"${FILESDIR}"/${PN}-1.08-perl-shebangs.patch
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)
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src_prepare() {
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default
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sed -i "s|$path = \"\";|$path = \"${EPREFIX}/usr/libexec/${PN}\";|" scripts/recon.pl || die
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}
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src_compile() {
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emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" -C src
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}
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src_install() {
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dobin scripts/*
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exeinto /usr/libexec/${PN}
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doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
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newdoc {00,}README
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if use examples; then
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insinto /usr/share/${PN}
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doins -r Demos
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fi
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}
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