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163 lines
4.2 KiB
163 lines
4.2 KiB
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2.ebuild,v 1.11 2012/03/07 19:33:39 jlec Exp $
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EAPI=3
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PYTHON_DEPEND="2"
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inherit autotools base eutils flag-o-matic python toolchain-funcs versionator
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MY_S2_PV=$(replace_version_separator 2 - ${PV})
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MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
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MY_S_P=${MY_S2_P}-${PR/r/revision-}
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MY_PV=${PV}
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MY_P=${PN}-${MY_PV}
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DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
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HOMEPAGE="http://www.biop.ox.ac.uk/coot/"
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SRC_URI="
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http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
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test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
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SLOT="0"
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LICENSE="GPL-3"
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KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
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IUSE="+openmp test"
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SCIDEPS="
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>=sci-libs/ccp4-libs-6.1
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>=sci-libs/clipper-20090520
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>=sci-libs/coot-data-2
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>=sci-libs/gsl-1.3
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>=sci-libs/mmdb-1.23
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sci-libs/ssm
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<sci-libs/monomer-db-1
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sci-chemistry/reduce
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<sci-chemistry/refmac-5.6
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sci-chemistry/probe"
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XDEPS="
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gnome-base/libgnomecanvas
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gnome-base/librsvg:2
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media-libs/libpng
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media-libs/freeglut
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x11-libs/gtk+:2
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x11-libs/gtkglext"
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SCHEMEDEPS="
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dev-scheme/net-http
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dev-scheme/guile-gui
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>=dev-scheme/guile-lib-0.1.6
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dev-scheme/guile-www
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>=x11-libs/guile-gtk-2.1"
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RDEPEND="
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${SCIDEPS}
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${XDEPS}
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${SCHEMEDEPS}
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dev-python/pygtk:2
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>=dev-libs/gmp-4.2.2-r2
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>=net-misc/curl-7.19.6
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net-dns/libidn"
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DEPEND="${RDEPEND}
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dev-lang/swig
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sys-devel/bc
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test? ( dev-scheme/greg )"
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S="${WORKDIR}/${MY_P}"
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pkg_setup() {
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if use openmp; then
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tc-has-openmp || die "Please use an OPENMP capable compiler"
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has_version '<sys-devel/libtool-2.4-r2' && append-ldflags $(no-as-needed)
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fi
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python_set_active_version 2
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}
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PATCHES=(
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"${FILESDIR}"/${PV}-clipper-config.patch
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"${FILESDIR}"/${PV}-mmdb-config.patch
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"${FILESDIR}"/${PV}-gl.patch
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"${FILESDIR}"/${PV}-test.patch
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"${FILESDIR}"/${PV}-ssm.patch
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"${FILESDIR}"/${PV}-libpng15.patch
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)
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src_prepare() {
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sed \
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-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
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-i configure.in || die
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base_src_prepare
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eautoreconf
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}
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src_configure() {
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# All the --with's are used to activate various parts.
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# Yes, this is broken behavior.
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econf \
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--includedir='${prefix}/include/coot' \
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--with-gtkcanvas-prefix="${EPREFIX}/usr" \
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--with-gtkgl-prefix="${EPREFIX}/usr" \
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--with-guile \
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--with-python="${EPREFIX}/usr" \
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--with-guile-gtk \
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--with-gtk2 \
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--with-pygtk \
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$(use_enable openmp)
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}
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src_compile() {
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emake || die "emake failed"
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python_convert_shebangs $(python_get_version) src/coot_gtk2.py
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cp "${S}"/src/coot_gtk2.py python/coot.py || die
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}
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src_test() {
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source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
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mkdir "${T}"/coot_test
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export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
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export COOT_SCHEME_DIR="${S}/scheme/"
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export COOT_RESOURCES_FILE="${S}/cootrc"
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export COOT_PIXMAPS_DIR="${S}/pixmaps"
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export COOT_DATA_DIR="${S}"
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export COOT_PYTHON_DIR="${S}/python"
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export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
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export PYTHONHOME="${EPREFIX}"/usr
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export CCP4_SCR="${T}"/coot_test
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export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
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export SYMINFO="${S}/syminfo.lib"
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export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
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cat > command-line-greg.scm <<- EOF
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(use-modules (ice-9 greg))
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(set! greg-tools (list "greg-tests"))
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(set! greg-debug #t)
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(set! greg-verbose 5)
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(let ((r (greg-test-run)))
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(if r
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(coot-real-exit 0)
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(coot-real-exit 1)))
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EOF
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einfo "Running test with following paths ..."
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einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
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einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
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einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
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einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
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einfo "COOT_DATA_DIR $COOT_DATA_DIR"
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einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
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einfo "PYTHONPATH $PYTHONPATH"
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einfo "PYTHONHOME $PYTHONHOME"
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einfo "CCP4_SCR ${CCP4_SCR}"
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einfo "CLIBD_MON ${CLIBD_MON}"
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einfo "SYMINFO ${SYMINFO}"
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"${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
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"${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
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}
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