gentoo-overlay/sci-biology/bioruby/files/bioruby-1.4.3.0001-fix-tests.patch

From edda65b8fb32c2eee6b0652074981c31aa68b0eb Mon Sep 17 00:00:00 2001
From: Naohisa Goto <ng@bioruby.org>
Date: Fri, 23 Aug 2013 23:51:59 +0900
Subject: [PATCH] Test bug fix: Read test file with binary mode to avoid
 encoding error

 * Test bug fix: Read test file with binary mode to avoid string encoding
   error. Thanks to nieder (github.com/nieder) who reports the bug.
   (https://github.com/bioruby/bioruby/issues/84)
---
 test/unit/bio/db/test_phyloxml.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/unit/bio/db/test_phyloxml.rb b/test/unit/bio/db/test_phyloxml.rb
index 0744c64..c24278d 100644
--- a/test/unit/bio/db/test_phyloxml.rb
+++ b/test/unit/bio/db/test_phyloxml.rb
@@ -100,7 +100,7 @@ def test_open_with_block
     end
 
     def test_new
-      str = File.read(TestPhyloXMLData.example_xml)
+      str = File.open(TestPhyloXMLData.example_xml, "rb") { |f| f.read }
       assert_instance_of(Bio::PhyloXML::Parser,
                          phyloxml = Bio::PhyloXML::Parser.new(str))
       common_test_next_tree(phyloxml)
-- 
1.8.4