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233 lines
6.7 KiB
233 lines
6.7 KiB
# Copyright 1999-2013 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.9.1-r1.ebuild,v 1.5 2013/03/01 08:23:03 jlec Exp $
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EAPI=5
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PYTHON_DEPEND="2"
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inherit eutils multilib prefix python toolchain-funcs
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DESCRIPTION="Visual Molecular Dynamics"
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HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
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SRC_URI="
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http://dev.gentoo.org/~jlec/distifles/${P}-gentoo-patches-2.tar.xz
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${P}.src.tar.gz"
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SLOT="0"
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LICENSE="vmd"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="cuda msms povray tachyon xinerama"
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RESTRICT="fetch"
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# currently, tk-8.5* with USE=truetype breaks some
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# tk apps such as Sequence Viewer or Timeline.
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CDEPEND="
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=dev-lang/tk-8.5*[-truetype]
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dev-lang/perl
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dev-python/numpy
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sci-libs/netcdf
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virtual/opengl
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>=x11-libs/fltk-1.1.10-r2:1
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x11-libs/libXft
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x11-libs/libXi
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cuda? (
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>=dev-util/nvidia-cuda-toolkit-3.1
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|| (
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sys-devel/gcc:4.4
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sys-devel/gcc:4.5 )
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)
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xinerama? ( x11-libs/libXinerama )"
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DEPEND="${CDEPEND}
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dev-lang/swig"
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RDEPEND="${CDEPEND}
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sci-biology/stride
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sci-chemistry/surf
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x11-terms/xterm
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msms? ( sci-chemistry/msms-bin )
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povray? ( media-gfx/povray )
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tachyon? ( media-gfx/tachyon )"
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VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
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# Binary only plugin!!
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QA_PREBUILT="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so"
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QA_FLAGS_IGNORED_amd64=" usr/lib64/vmd/plugins/LINUX/tcl/volutil1.3/volutil"
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QA_FLAGS_IGNORED_x86=" usr/lib/vmd/plugins/LINUX/tcl/volutil1.3/volutil"
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pkg_nofetch() {
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elog "Please download ${P}.src.tar.gz from"
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elog "${VMD_DOWNLOAD}"
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elog "after agreeing to the license and get"
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elog "http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches-2.tar.xz"
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elog "Place both in ${DISTDIR}"
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}
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pkg_setup() {
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python_set_active_version 2
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python_pkg_setup
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}
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src_prepare() {
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cd "${WORKDIR}"/plugins
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epatch "${WORKDIR}"/${P}-gentoo-plugins.patch
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[[ ${SILENT} == yes ]] || sed '/^.SILENT/d' -i $(find -name Makefile)
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sed \
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-e "s:CC = gcc:CC = $(tc-getCC):" \
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-e "s:CXX = g++:CXX = $(tc-getCXX):" \
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-e "s:COPTO =.*\":COPTO = -fPIC -o\":" \
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-e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o\":" \
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-e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \
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-e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \
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-e "s:SHLD = gcc:SHLD = $(tc-getCC) -shared:" \
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-e "s:SHXXLD = g++:SHXXLD = $(tc-getCXX) -shared:" \
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-e "s:-ltcl8.5:-ltcl:" \
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-i Make-arch || die "Failed to set up plugins Makefile"
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sed \
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-e '/^AR /s:=:?=:g' \
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-e '/^RANLIB /s:=:?=:g' \
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-i ../plugins/*/Makefile || die
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tc-export AR RANLIB
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sed \
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-e "s:\$(CXXFLAGS)::g" \
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-i hesstrans/Makefile || die
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# prepare vmd itself
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cd "${S}"
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epatch "${WORKDIR}"/${P}-gentoo-base.patch
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# PREFIX
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sed \
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-e "s:/usr/include/:${EPREFIX}/usr/include:g" \
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-i configure || die
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sed \
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-e "s:gentoo-bindir:${ED}/usr/bin:g" \
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-e "s:gentoo-libdir:${ED}/usr/$(get_libdir):g" \
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-e "s:gentoo-opengl-include:${EPREFIX}/usr/include/GL:g" \
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-e "s:gentoo-opengl-libs:${EPREFIX}/usr/$(get_libdir):g" \
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-e "s:gentoo-gcc:$(tc-getCC):g" \
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-e "s:gentoo-g++:$(tc-getCXX):g" \
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-e "s:gentoo-nvcc:${EPREFIX}/opt/cuda/bin/nvcc:g" \
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-e "s:gentoo-cflags:${CFLAGS}:g" \
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-e "s:gentoo-cxxflags:${CXXFLAGS}:g" \
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-e "s:gentoo-nvflags: -O3 -v:g" \
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-e "s:gentoo-ldflags:${LDFLAGS}:g" \
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-e "s:gentoo-plugindir:${WORKDIR}/plugins:g" \
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-e "s:gentoo-fltk-include:$(fltk-config --includedir):g" \
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-e "s:gentoo-fltk-libs:$(dirname $(fltk-config --libs)) -Wl,-rpath,$(dirname $(fltk-config --libs)):g" \
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-e "s:gentoo-netcdf-include:${EPREFIX}/usr/include:g" \
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-e "s:gentoo-netcdf-libs:${EPREFIX}/usr/$(get_libdir):g" \
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-i configure || die
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# local NUMPY_INCLUDE="numpy/core/include"
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# sed -e "s:gentoo-python-include:${EPREFIX}$(python_get_includedir):" \
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# -e "s:gentoo-python-lib:${EPREFIX}$(python_get_libdir):" \
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# -e "s:gentoo-python-link:$(PYTHON):" \
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# -e "s:gentoo-numpy-include:${EPREFIX}$(python_get_sitedir)/${NUMPY_INCLUDE}:" \
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# -i configure || die "failed setting up python"
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if use cuda; then
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local gcc_bindir
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if has_version sys-devel/gcc:4.5; then
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gcc_bindir="$(ls -d ${EPREFIX}/usr/*pc-linux-gnu/gcc-bin/4.5*)"
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elif has_version sys-devel/gcc:4.4; then
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gcc_bindir="$(ls -d ${EPREFIX}/usr/*pc-linux-gnu/gcc-bin/4.4*)"
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else
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ewarn "Please install gcc with a version between 4.4* and 4.5*"
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fi
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sed \
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-e "s:gentoo-cuda-lib:${EPREFIX}/opt/cuda/$(get_libdir):g" \
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-e "/^\$arch_nvccflags/s:=:= \"--compiler-bindir=${gcc_bindir} \" . \n:1" \
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-i configure || die
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fi
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sed \
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-e "s:LINUXPPC:LINUX:g" \
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-e "s:LINUXALPHA:LINUX:g" \
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-e "s:LINUXAMD64:LINUX:g" \
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-e "s:gentoo-stride:${EPREFIX}/usr/bin/stride:g" \
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-e "s:gentoo-surf:${EPREFIX}/usr/bin/surf:g" \
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-e "s:gentoo-tachyon:${EPREFIX}/usr/bin/tachyon:g" \
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-i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script"
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}
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src_configure() {
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local myconf="OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY NOSILENT XINPUT"
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rm -f configure.options && echo $myconf >> configure.options
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use cuda && myconf+=" CUDA"
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# use mpi && myconf+=" MPI"
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# use tachion && myconf+=" LIBTACHYON"
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use xinerama && myconf+=" XINERAMA"
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export \
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PYTHON_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)" \
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PYTHON_LIBRARY_DIR="${EPREFIX}$(python_get_libdir)" \
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PYTHON_LIBRARY="$(python_get_library -l)" \
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NUMPY_INCLUDE_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include" \
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NUMPY_LIBRARY_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include"
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./configure LINUX \
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${myconf} || die
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}
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src_compile() {
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# build plugins
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cd "${WORKDIR}"/plugins
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emake \
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TCLINC="-I${EPREFIX}/usr/include" \
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TCLLIB="-L${EPREFIX}/usr/$(get_libdir)" \
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NETCDFLIB="$(pkg-config --libs-only-L netcdf) ${EPREFIX}/usr/$(get_libdir)/libnetcdf.so" \
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NETCDFINC="$(pkg-config --cflags-only-I netcdf) ${EPREFIX}/usr/include" \
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NETCDFLDFLAGS="$(pkg-config --libs netcdf)" \
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LINUX
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# build vmd
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cd "${S}"/src
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emake
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}
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src_install() {
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# install plugins
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cd "${WORKDIR}"/plugins
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emake \
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PLUGINDIR="${ED}/usr/$(get_libdir)/${PN}/plugins" \
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distrib
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# install vmd
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cd "${S}"/src
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emake install
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# install docs
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cd "${S}"
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dodoc Announcement README doc/ig.pdf doc/ug.pdf
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# remove some of the things we don't want and need in
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# /usr/lib
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cd "${ED}"/usr/$(get_libdir)/vmd
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rm -fr doc README Announcement LICENSE || \
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die "failed to clean up /usr/lib/vmd directory"
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# adjust path in vmd wrapper
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sed \
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-e "s:${ED}::" -i "${ED}"/usr/bin/${PN} \
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-e "/^defaultvmddir/s:^.*$:defaultvmddir=\"${EPREFIX}/usr/$(get_libdir)/${PN}\":g" \
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|| die "failed to set up vmd wrapper script"
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# install icon and generate desktop entry
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insinto /usr/share/pixmaps
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doins "${WORKDIR}"/vmd.png
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eprefixify "${WORKDIR}"/vmd.desktop
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domenu "${WORKDIR}"/vmd.desktop
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}
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