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gentoo-overlay/sci-biology/gmap/gmap-2012.07.20.ebuild

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725 B

# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
MY_PV=${PV//./-}
DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
HOMEPAGE="http://research-pub.gene.com/gmap/"
SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
LICENSE="gmap"
SLOT="0"
IUSE="+samtools +goby"
KEYWORDS="~amd64 ~x86"
DEPEND="samtools? ( sci-biology/samtools )
goby? ( sci-biology/goby-cpp )"
RDEPEND="${DEPEND}"
S="${WORKDIR}/gmap-${MY_PV}"
src_configure() {
econf $(use_with samtools) \
$(use_with goby goby /usr)
}
src_install() {
einstall || die
dodoc AUTHORS ChangeLog README
}
src_test() {
emake check || die
}