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137 lines
4.6 KiB
137 lines
4.6 KiB
# ChangeLog for sci-biology/samtools
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.26 2015/07/01 18:30:25 zlogene Exp $
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01 Jul 2015; Mikle Kolyada <zlogene@gentoo.org> samtools-1.0-r1.ebuild:
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x86 stable wrt bug #525630
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08 Apr 2015; Michał Górny <mgorny@gentoo.org> samtools-0.1.19-r2.ebuild:
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Drop old Python implementations
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28 Feb 2015; Justin Lecher <jlec@gentoo.org>
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files/samtools-1.2-buildsystem.patch, samtools-1.2.ebuild:
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Fix depend rules in make which break due to unbundling of htslib, #541134; use
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LD_LIBRARY_PATH druing tests
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*samtools-1.2 (18 Feb 2015)
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18 Feb 2015; Justin Lecher <jlec@gentoo.org>
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+files/samtools-1.2-buildsystem.patch, +samtools-1.2.ebuild:
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Version Bump, #540356
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*samtools-1.1 (06 Jan 2015)
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06 Jan 2015; Justin Lecher <jlec@gentoo.org> +samtools-1.1.ebuild,
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+files/samtools-1.1-buildsystem.patch:
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Version Bump
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*samtools-1.0-r1 (25 Sep 2014)
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25 Sep 2014; Justin Lecher <jlec@gentoo.org> +samtools-1.0-r1.ebuild,
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+files/samtools-1.0-buildsystem.patch:
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Install bam headers and create libbam.so, #523644
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24 Sep 2014; Justin Lecher <jlec@gentoo.org> samtools-1.0.ebuild:
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Add missing build dep, #523586
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*samtools-1.0 (20 Sep 2014)
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20 Sep 2014; Justin Lecher <jlec@gentoo.org> -samtools-0.1.18.ebuild,
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-samtools-0.1.18-r2.ebuild, -samtools-0.1.18-r3.ebuild,
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samtools-0.1.19-r2.ebuild, +samtools-1.0.ebuild:
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Version Bump, #523224; drop old
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*samtools-0.1.19-r2 (23 Mar 2014)
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23 Mar 2014; Justin Lecher <jlec@gentoo.org> -samtools-0.1.19-r1.ebuild,
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+samtools-0.1.19-r2.ebuild:
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Fix symlink creation, thanks Martin Mokrejs telling me that
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11 Feb 2014; Fabian Groffen <grobian@gentoo.org> samtools-0.1.19-r1.ebuild:
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Reference correct library name on Darwin, thanks Linlin Yan in bug #491812
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*samtools-0.1.19-r1 (06 Dec 2013)
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06 Dec 2013; Justin Lecher <jlec@gentoo.org> -samtools-0.1.19.ebuild,
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+samtools-0.1.19-r1.ebuild, files/samtools-0.1.19-buildsystem.patch:
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Fix underlinking
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06 Dec 2013; Justin Lecher <jlec@gentoo.org> samtools-0.1.12.ebuild,
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samtools-0.1.18.ebuild, samtools-0.1.18-r2.ebuild, samtools-0.1.18-r3.ebuild,
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samtools-0.1.19.ebuild:
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Keyword for *-linux, tested by me
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*samtools-0.1.19 (20 Sep 2013)
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20 Sep 2013; Justin Lecher <jlec@gentoo.org> +samtools-0.1.19.ebuild,
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+files/samtools-0.1.19-buildsystem.patch:
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Version Bump, #485450
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*samtools-0.1.18-r3 (29 Mar 2013)
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29 Mar 2013; Justin Lecher <jlec@gentoo.org> +samtools-0.1.18-r3.ebuild:
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Install bcftools and vcfutils.pl pointed out by mahnmut
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11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
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Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
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*samtools-0.1.18-r2 (27 Jan 2013)
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27 Jan 2013; Justin Lecher <jlec@gentoo.org> -samtools-0.1.18-r1.ebuild,
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+samtools-0.1.18-r2.ebuild:
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Add missing deps and correct sed lines, #454134; thanks Torsten Veller
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*samtools-0.1.18-r1 (23 Jan 2013)
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23 Jan 2013; Justin Lecher <jlec@gentoo.org> -samtools-0.1.12a-r1.ebuild,
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-samtools-0.1.16.ebuild, -samtools-0.1.17.ebuild, +samtools-0.1.18-r1.ebuild,
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metadata.xml:
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Drop old; use pkg-config to check for libncurses
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*samtools-0.1.18 (26 Sep 2011)
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26 Sep 2011; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.18.ebuild:
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Version bump
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*samtools-0.1.17 (18 Jul 2011)
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18 Jul 2011; Justin Lecher <jlec@gentoo.org> samtools-0.1.12.ebuild,
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samtools-0.1.12a-r1.ebuild, samtools-0.1.16.ebuild, +samtools-0.1.17.ebuild:
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Version Bump, #375519
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*samtools-0.1.16 (30 Apr 2011)
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30 Apr 2011; Justin Lecher <jlec@gentoo.org> samtools-0.1.12.ebuild,
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samtools-0.1.12a-r1.ebuild, +samtools-0.1.16.ebuild:
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Version Bump, #365265
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*samtools-0.1.12a-r1 (14 Mar 2011)
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14 Mar 2011; Kacper Kowalik <xarthisius@gentoo.org> -samtools-0.1.12a.ebuild,
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+samtools-0.1.12a-r1.ebuild:
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Drop empty RDEP/DEP, respect CC,LDFLAGS wrt 358563. Thanks to Diego for the
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report.
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*samtools-0.1.12a (18 Feb 2011)
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18 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.12a.ebuild:
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Address bug 354941, build library, correct versioning
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17 Feb 2011; Thomas Kahle <tomka@gentoo.org> samtools-0.1.12.ebuild:
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x86 stable per bug 353566
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11 Feb 2011; Markos Chandras <hwoarang@gentoo.org> samtools-0.1.12.ebuild:
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Stable on amd64 wrt bug #353566
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*samtools-0.1.12 (21 Dec 2010)
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21 Dec 2010; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.12.ebuild,
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+metadata.xml:
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Version bump, import from Science overlay
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22 Jan 2010; root <root@onyx.(none)>
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Version bump
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26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
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New package, ebuild written by me
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