gentoo-overlay/sci-chemistry/autodock/files/autodock-4.2.6-buildsystem.patch

 src/autodock/Makefile.am | 6 +++---
 src/autogrid/Makefile.am | 4 ++--
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/src/autodock/Makefile.am b/src/autodock/Makefile.am
index 799a3c4..911897b 100644
--- a/src/autodock/Makefile.am
+++ b/src/autodock/Makefile.am
@@ -459,7 +459,8 @@ endif
 
 BUILT_SOURCES = $(autodock4_SOURCES) default_parameters.h
 
-AM_CXXFLAGS = -O3 # Agressive optimization
+AM_CXXFLAGS =
+#AM_CXXFLAGS = -O3 # Agressive optimization
 #AM_CXXFLAGS = -g # debug
 
     # if gnu c++ compiler
@@ -488,8 +489,7 @@ endif
 AM_CPPFLAGS = -DNOSQRT \
 	      -DUSE_DOUBLE \
               -DUSE_8A_NBCUTOFF \
-	      -DUSE_INT_AS_FOURBYTELONG \
-	      -O3
+	      -DUSE_INT_AS_FOURBYTELONG
 # AM_LDFLAGS = -g # -g is MP debug
 
 
diff --git a/src/autogrid/Makefile.am b/src/autogrid/Makefile.am
index b531099..b78b380 100644
--- a/src/autogrid/Makefile.am
+++ b/src/autogrid/Makefile.am
@@ -94,9 +94,9 @@ autogrid4_SOURCES = main.cpp \
 BUILT_SOURCES = default_parameters.h
 
 
-AM_CFLAGS = -Wall -O3 # All warnings, Agressive optimization
+AM_CFLAGS = -Wall # All warnings, Agressive optimization
 
-AM_CPPFLAGS = -Wall -O3 -I $(srcdir) -I$(srcdir)/../autodock # All warnings, Agressive optimization
+AM_CPPFLAGS = -Wall -I $(srcdir) -I$(srcdir)/../autodock # All warnings, Agressive optimization
 AM_CPPFLAGS += -Wno-write-strings # increase compatibility with pre 4.x compilers for string handling
 #  M Pique - add USE_8A_NBCUTOFF
 AM_CPPFLAGS += -DUSE_8A_NBCUTOFF