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gentoo-overlay/sci-biology/express/express-0.9.5.ebuild

36 lines
848 B

# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=4
inherit cmake-utils
DESCRIPTION="Streaming RNA-Seq Analysis"
HOMEPAGE="http://bio.math.berkeley.edu/eXpress/"
SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="
dev-libs/boost
sys-libs/zlib
sci-biology/bamtools"
RDEPEND="${DEPEND}"
S="${WORKDIR}/${P}-src"
CMAKE_USE_DIR="${S}/src"
src_prepare() {
sed \
-e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \
-e '1 a find_package(Boost 1.46 COMPONENTS filesystem program_options thread)' \
-e '1 a find_package(ZLIB)' \
-e '/add_executable/ a include_directories("/usr/include/bamtools")' \
-i src/CMakeLists.txt || die
}