gentoo-overlay/sci-chemistry/namd/files/namd-barrier-fix-gentoo.patch

# patch to fix compile error on gcc-3.x

diff -Naur NAMD_2.6b1_Source/src/BackEnd.C NAMD_2.6b1_Source_patched/src/BackEnd.C
--- NAMD_2.6b1_Source/src/BackEnd.C	2003-12-31 06:37:15.000000000 +0000
+++ NAMD_2.6b1_Source_patched/src/BackEnd.C	2005-08-22 18:59:59.000000000 +0000
@@ -162,7 +162,7 @@
 }
 
 // start QD and scheduler
-void BackEnd::barrier(void) {
+void BackEnd::namd_barrier(void) {
   awaken();
   suspend();
 }
diff -Naur NAMD_2.6b1_Source/src/BackEnd.h NAMD_2.6b1_Source_patched/src/BackEnd.h
--- NAMD_2.6b1_Source/src/BackEnd.h	2000-01-29 00:20:05.000000000 +0000
+++ NAMD_2.6b1_Source_patched/src/BackEnd.h	2005-08-22 18:59:47.000000000 +0000
@@ -17,7 +17,7 @@
 
   static void suspend(void);  // Let message code run...
   static void awaken(void);  // ...then return
-  static void barrier(void);  // Let message code run, then return
+  static void namd_barrier(void);  // Let message code run, then return
   static void ExitSchedOn(int pe); // Tell a remote processor to stop
                                    // his scheduler
 
diff -Naur NAMD_2.6b1_Source/src/ScriptTcl.C NAMD_2.6b1_Source_patched/src/ScriptTcl.C
--- NAMD_2.6b1_Source/src/ScriptTcl.C	2005-06-23 18:47:00.000000000 +0000
+++ NAMD_2.6b1_Source_patched/src/ScriptTcl.C	2005-08-22 19:00:21.000000000 +0000
@@ -56,7 +56,7 @@
 }
 
 void ScriptTcl::barrier() {
-  BackEnd::barrier();
+  BackEnd::namd_barrier();
 }
 
 void ScriptTcl::initcheck() {
diff -Naur NAMD_2.6b1_Source/src/main.C NAMD_2.6b1_Source_patched/src/main.C
--- NAMD_2.6b1_Source/src/main.C	2005-05-27 22:56:49.000000000 +0000
+++ NAMD_2.6b1_Source_patched/src/main.C	2005-08-22 19:17:34.000000000 +0000
@@ -67,7 +67,9 @@
 
 #ifndef NOHOSTNAME
   iout << iINFO <<
-     "Sending usage information to NAMD developers via UDP.  Sent data is:\n"
+     "Markus says: I don't want to send usage information \n" 
+     << endi;
+  iout << iINFO << "to NAMD developers :) Data not sent is:\n"
      << endi;
 
   char sendbuf[TBSOFT_TRACK_MAXLEN];
@@ -88,7 +90,7 @@
   sprintf(sendbuf, "1 %s  %s  %s  %s  %s  %s  %s", 
     program, versionnum, platform, numcpus, miscinfo, host, user);
   iout << iINFO << sendbuf << "\n" << endi;
-  send_dgram(TBSOFT_TRACK_HOST, TBSOFT_TRACK_PORT, sendbuf, strlen(sendbuf));
+  //send_dgram(TBSOFT_TRACK_HOST, TBSOFT_TRACK_PORT, sendbuf, strlen(sendbuf));
 
 #endif
   return 0;