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218 lines
7.3 KiB
218 lines
7.3 KiB
core/Makefile | 100 +++++++++++++++++++++++++++++-----------------------------
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1 file changed, 50 insertions(+), 50 deletions(-)
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diff --git a/core/Makefile b/core/Makefile
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index 9acebb3..3838a45 100644
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--- a/core/Makefile
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+++ b/core/Makefile
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@@ -145,151 +145,151 @@ mltaln.h : functions.h
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touch mltaln.h
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version : version.c mltaln.h
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- $(CC) -o $@ version.c $(MYCFLAGS)
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+ $(CC) $(LDFLAGS) -o $@ version.c $(MYCFLAGS)
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tbfast : $(OBJTBFAST)
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- $(CC) -o $@ $(OBJTBFAST) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJTBFAST) $(MYCFLAGS) $(LIBS)
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addsingle : $(OBJADDSINGLE)
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- $(CC) -o $@ $(OBJADDSINGLE) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJADDSINGLE) $(MYCFLAGS) $(LIBS)
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tbfast2 : $(OBJTBFAST2)
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- $(CC) -o $@ $(OBJTBFAST2) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJTBFAST2) $(MYCFLAGS) $(LIBS)
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disttbfast : $(OBJDISTTBFAST)
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- $(CC) -o $@ $(OBJDISTTBFAST) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDISTTBFAST) $(MYCFLAGS) $(LIBS)
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makedirectionlist : $(OBJMAKEDIRECTIONLIST)
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- $(CC) -o $@ $(OBJMAKEDIRECTIONLIST) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJMAKEDIRECTIONLIST) $(MYCFLAGS) $(LIBS)
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splittbfast : $(OBJSPLITTBFAST)
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- $(CC) -o $@ $(OBJSPLITTBFAST) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSPLITTBFAST) $(MYCFLAGS) $(LIBS)
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splitfromaln : $(OBJSPLITFROMALN)
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- $(CC) -o $@ $(OBJSPLITFROMALN) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSPLITFROMALN) $(MYCFLAGS) $(LIBS)
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splittbfast2 : $(OBJSPLITTBFAST2)
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- $(CC) -o $@ $(OBJSPLITTBFAST2) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSPLITTBFAST2) $(MYCFLAGS) $(LIBS)
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dummy : $(OBJDUMMY)
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- $(CC) -o $@ $(OBJDUMMY) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDUMMY) $(MYCFLAGS) $(LIBS)
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setcore : $(OBJSETCORE)
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- $(CC) -o $@ $(OBJSETCORE) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSETCORE) $(MYCFLAGS) $(LIBS)
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countlen : $(OBJCOUNTLEN)
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- $(CC) -o $@ $(OBJCOUNTLEN) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJCOUNTLEN) $(MYCFLAGS) $(LIBS)
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seq2regtable : $(OBJSEQ2REGTABLE)
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- $(CC) -o $@ $(OBJSEQ2REGTABLE) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSEQ2REGTABLE) $(MYCFLAGS) $(LIBS)
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regtable2seq : $(OBJREGTABLE2SEQ)
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- $(CC) -o $@ $(OBJREGTABLE2SEQ) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJREGTABLE2SEQ) $(MYCFLAGS) $(LIBS)
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setdirection : $(OBJSETDIRECTION)
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- $(CC) -o $@ $(OBJSETDIRECTION) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSETDIRECTION) $(MYCFLAGS) $(LIBS)
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replaceu : $(OBJREPLACEU)
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- $(CC) -o $@ $(OBJREPLACEU) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJREPLACEU) $(MYCFLAGS) $(LIBS)
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restoreu : $(OBJRESTOREU)
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- $(CC) -o $@ $(OBJRESTOREU) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJRESTOREU) $(MYCFLAGS) $(LIBS)
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f2cl : $(OBJF2CL)
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- $(CC) -o $@ $(OBJF2CL) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJF2CL) $(MYCFLAGS) $(LIBS)
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mccaskillwrap : $(OBJMCCASKILLWRAP)
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- $(CC) -o $@ $(OBJMCCASKILLWRAP) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJMCCASKILLWRAP) $(MYCFLAGS) $(LIBS)
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contrafoldwrap : $(OBJCONTRAFOLDWRAP)
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- $(CC) -o $@ $(OBJCONTRAFOLDWRAP) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJCONTRAFOLDWRAP) $(MYCFLAGS) $(LIBS)
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pairlocalalign : $(OBJPAIRLOCALALIGN)
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- $(CC) -o $@ $(OBJPAIRLOCALALIGN) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJPAIRLOCALALIGN) $(MYCFLAGS) $(LIBS)
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pairash : $(OBJPAIRASH)
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- $(CC) -o $@ $(OBJPAIRASH) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJPAIRASH) $(MYCFLAGS) $(LIBS)
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rnatest : $(OBJRNATEST)
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- $(CC) -o $@ $(OBJRNATEST) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJRNATEST) $(MYCFLAGS) $(LIBS)
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pair2hat3s : $(OBJPAIR2HAT3S)
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- $(CC) -o $@ $(OBJPAIR2HAT3S) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJPAIR2HAT3S) $(MYCFLAGS) $(LIBS)
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multi2hat3s : $(OBJMULTI2HAT3S)
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- $(CC) -o $@ $(OBJMULTI2HAT3S) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJMULTI2HAT3S) $(MYCFLAGS) $(LIBS)
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getlag : $(OBJGETLAG)
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- $(CC) -o $@ $(OBJGETLAG) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJGETLAG) $(MYCFLAGS) $(LIBS)
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tditr : $(OBJTDITR)
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- $(CC) -o $@ $(OBJTDITR) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJTDITR) $(MYCFLAGS) $(LIBS)
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dvtditr : $(OBJDVTDITR)
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- $(CC) -o $@ $(OBJDVTDITR) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDVTDITR) $(MYCFLAGS) $(LIBS)
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mafft-profile : $(OBJGALN)
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- $(CC) -o $@ $(OBJGALN) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJGALN) $(MYCFLAGS) $(LIBS)
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gapfill : $(OBJGAPFILL)
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- $(CC) -o $@ $(OBJGAPFILL) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJGAPFILL) $(MYCFLAGS) $(LIBS)
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dndfast4 : $(OBJDNDFAST4)
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- $(CC) -o $@ $(OBJDNDFAST4) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDFAST4) $(MYCFLAGS) $(LIBS)
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dndfast5 : $(OBJDNDFAST5)
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- $(CC) -o $@ $(OBJDNDFAST5) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDFAST5) $(MYCFLAGS) $(LIBS)
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dndfast6 : $(OBJDNDFAST6)
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- $(CC) -o $@ $(OBJDNDFAST6) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDFAST6) $(MYCFLAGS) $(LIBS)
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dndfast7 : $(OBJDNDFAST7)
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- $(CC) -o $@ $(OBJDNDFAST7) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDFAST7) $(MYCFLAGS) $(LIBS)
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dndblast : $(OBJDNDBLAST)
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- $(CC) -o $@ $(OBJDNDBLAST) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDBLAST) $(MYCFLAGS) $(LIBS)
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dndfast3 : $(OBJDNDFAST3)
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- $(CC) -o $@ $(OBJDNDFAST3) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDFAST3) $(MYCFLAGS) $(LIBS)
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triplet : $(OBJTRIPLET)
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- $(CC) -o $@ $(OBJTRIPLET) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJTRIPLET) $(MYCFLAGS) $(LIBS)
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triplet3 : $(OBJTRIPLET3)
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- $(CC) -o $@ $(OBJTRIPLET3) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJTRIPLET3) $(MYCFLAGS) $(LIBS)
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sextet3 : $(OBJSEXTET3)
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- $(CC) -o $@ $(OBJSEXTET3) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSEXTET3) $(MYCFLAGS) $(LIBS)
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sextet4 : $(OBJSEXTET4)
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- $(CC) -o $@ $(OBJSEXTET4) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSEXTET4) $(MYCFLAGS) $(LIBS)
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sextet5 : $(OBJSEXTET5)
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- $(CC) -o $@ $(OBJSEXTET5) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSEXTET5) $(MYCFLAGS) $(LIBS)
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mafft-distance : $(OBJDISTANCE)
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- $(CC) -o $@ $(OBJDISTANCE) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDISTANCE) $(MYCFLAGS) $(LIBS)
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triplet5 : $(OBJTRIPLET5)
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- $(CC) -o $@ $(OBJTRIPLET5) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJTRIPLET5) $(MYCFLAGS) $(LIBS)
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triplet6 : $(OBJTRIPLET6)
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- $(CC) -o $@ $(OBJTRIPLET6) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJTRIPLET6) $(MYCFLAGS) $(LIBS)
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octet4 : $(OBJOCTET4)
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- $(CC) -o $@ $(OBJOCTET4) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJOCTET4) $(MYCFLAGS) $(LIBS)
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dndpre : $(OBJDNDPRE)
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- $(CC) -o $@ $(OBJDNDPRE) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDPRE) $(MYCFLAGS) $(LIBS)
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dndpre2 : $(OBJDNDPRESCORE)
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- $(CC) -o $@ $(OBJDNDPRESCORE) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJDNDPRESCORE) $(MYCFLAGS) $(LIBS)
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score : $(OBJSCORE)
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- $(CC) -o $@ $(OBJSCORE) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJSCORE) $(MYCFLAGS) $(LIBS)
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genMtx : $(OBJGENMTX)
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- $(CC) -o $@ $(OBJGENMTX) $(MYCFLAGS) $(LIBS)
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+ $(CC) $(LDFLAGS) -o $@ $(OBJGENMTX) $(MYCFLAGS) $(LIBS)
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gapfill.o : gapfill.c $(HEADER)
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$(CC) $(MYCFLAGS) -c gapfill.c
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@@ -525,7 +525,7 @@ install : all
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chmod 755 $(SCRIPTS)
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$(INSTALL) $(SCRIPTS) $(BINDIR)
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chmod 755 $(PROGS)
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- $(INSTALL) -s $(PROGS) $(LIBDIR)
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+ $(INSTALL) $(PROGS) $(LIBDIR)
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$(INSTALL) -m 644 $(MANPAGES) $(LIBDIR)
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( cd $(BINDIR); \
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