46 lines
1,012 B
Bash
46 lines
1,012 B
Bash
# Copyright 1999-2013 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=5
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AUTOTOOLS_AUTORECONF=true
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inherit autotools-utils
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DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
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HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
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SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
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LICENSE="abyss"
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SLOT="0"
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IUSE="+mpi openmp"
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KEYWORDS="~amd64 ~x86"
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DEPEND="
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dev-cpp/sparsehash
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mpi? ( virtual/mpi )"
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RDEPEND="${DEPEND}"
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# todo: --enable-maxk=N configure option
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# todo: fix automagic mpi toggling
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PATCHES=(
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"${FILESDIR}"/${P}-gcc-4.7.patch
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"${FILESDIR}"/${PN}-1.3.3-ac_prog_ar.patch
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)
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src_prepare() {
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tc-export AR
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sed -i -e "s/-Werror//" configure.ac || die #365195
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sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
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autotools-utils_src_prepare
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}
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src_configure() {
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local myeconfargs=(
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--docdir="${EPREFIX}/usr/share/doc/${PF}"
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$(use_enable openmp)
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)
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autotools-utils_src_configure
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}
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