60 lines
1.5 KiB
Bash
60 lines
1.5 KiB
Bash
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild,v 1.1 2012/06/23 18:57:05 jlec Exp $
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EAPI=4
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inherit eutils toolchain-funcs multilib prefix
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MY_P="${PN}-v${PV}-prod-src"
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DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
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HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
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SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"
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LICENSE="PDB"
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SLOT="0"
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KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
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IUSE=""
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RDEPEND="!<app-text/html-xml-utils-5.3"
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DEPEND="${RDEPEND}
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>=sci-libs/cifparse-obj-7.025"
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S="${WORKDIR}/${MY_P}"
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MAKEOPTS+=" -j1"
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src_prepare() {
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epatch \
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"${FILESDIR}"/${P}-cflags-install.patch \
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"${FILESDIR}"/${P}-gcc-4.7.patch \
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"${FILESDIR}"/${PN}-3.004-env.patch
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sed -i \
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-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
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-e "s:^\(CC=\).*:\1$(tc-getCC):g" \
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-e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \
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-e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \
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"${S}"/etc/make.* \
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|| die "Failed to fix makefiles"
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eprefixify pdb-extract-v3.0/Makefile etc/*
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}
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src_install() {
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exeinto /usr/libexec/ccp4/bin
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doexe bin/pdb_extract{,_sf} bin/extract
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insinto /usr/include/rcsb
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doins include/*
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dodoc README*
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insinto /usr/share/rcsb/
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doins -r pdb-extract-data
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cat >> "${T}"/envd <<- EOF
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PDB_EXTRACT="${EPREFIX}/usr/share/rcsb/"
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PDB_EXTRACT_ROOT="${EPREFIX}/usr/"
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EOF
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newenvd "${T}"/envd 20pdb-extract
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}
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