42 lines
881 B
Bash
42 lines
881 B
Bash
# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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inherit toolchain-funcs
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DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays"
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HOMEPAGE="https://github.com/alexdobin/STAR"
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SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="GPL-3"
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SLOT="0"
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KEYWORDS="~amd64"
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RDEPEND="sci-libs/htslib:="
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DEPEND="${RDEPEND}
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virtual/pkgconfig"
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PATCHES=( "${FILESDIR}"/${PN}-2.5.3a-fix-build-system.patch )
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DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf )
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pkg_pretend() {
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[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
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}
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pkg_setup() {
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[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
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}
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src_configure() {
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tc-export CC CXX PKG_CONFIG
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}
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src_compile() {
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emake -C source STAR
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}
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src_install() {
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dobin source/STAR
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einstalldocs
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}
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