89 lines
1.9 KiB
Bash
89 lines
1.9 KiB
Bash
# Copyright 1999-2015 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=5
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PYTHON_COMPAT=( python2_7 )
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PYTHON_REQ_USE="tk"
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inherit eutils python-single-r1 versionator
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MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
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DATE="08.26.2013"
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DESCRIPTION="Automated NOE assignment and NMR structure calculation"
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HOMEPAGE="http://aria.pasteur.fr/"
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SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2_${DATE}.tar.gz"
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SLOT="0"
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LICENSE="cns"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="examples"
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REQUIRED_USE="${PYTHON_REQUIRED_USE}"
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RDEPEND="
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${PYTHON_DEPS}
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dev-tcltk/tix
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dev-lang/tk
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>=dev-python/numpy-1.1[${PYTHON_USEDEP}]
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dev-python/matplotlib[${PYTHON_USEDEP},tk]
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>=sci-chemistry/cns-1.2.1-r7[aria,openmp]
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>=sci-chemistry/ccpn-2.2[${PYTHON_USEDEP}]
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sci-chemistry/clashlist
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sci-chemistry/procheck
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sci-libs/clashscore-db"
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DEPEND="${RDEPEND}"
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RESTRICT="fetch"
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S="${WORKDIR}/${MY_P}"
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pkg_nofetch(){
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einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
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einfo "and place it in ${DISTDIR}"
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}
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pkg_setup() {
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python-single-r1_pkg_setup
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}
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src_test(){
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export CCPNMR_TOP_DIR=$(python_get_sitedir)
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export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
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${PYTHON} check.py || die
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}
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src_install(){
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python_moduleinto ${PN}
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python_domodule src aria2.py
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python_moduleinto ${PN}/cns
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python_domodule cns/{protocols,toppar,src/helplib}
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if use examples; then
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insinto /usr/share/${P}/
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doins -r examples
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fi
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# ENV
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cat >> "${T}"/20aria <<- EOF
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ARIA2="$(python_get_sitedir)/${PN}"
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EOF
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doenvd "${T}"/20aria
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# Launch Wrapper
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cat >> "${T}"/aria <<- EOF
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#!/bin/sh
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export CCPNMR_TOP_DIR="$(python_get_sitedir)"
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export PYTHONPATH="$(python_get_sitedir)/ccpn/python"
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exec "${PYTHON}" -O "\${ARIA2}"/aria2.py \$@
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EOF
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dobin "${T}"/aria
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dosym aria /usr/bin/aria2
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dodoc README
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python_optimize "${D}/$(python_get_sitedir)"
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}
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